Wall clock time and date at job start Tue Mar 31 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48495 * 109.47373 * 240.00544 * 3 2 1 5 5 H 1.48509 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46912 * 120.00227 * 3 2 1 7 7 C 1.38941 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00324 * 157.20960 * 7 2 1 9 9 N 1.37101 * 120.00298 * 337.21054 * 7 2 1 10 10 C 1.46506 * 119.99736 * 325.34246 * 9 7 2 11 11 C 1.53000 * 109.47367 * 270.00271 * 10 9 7 12 12 C 1.50694 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00071 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00134 * 179.97438 * 12 11 10 15 15 C 1.34775 * 120.00463 * 145.34525 * 9 7 2 16 16 O 1.21289 * 119.99858 * 184.88244 * 15 9 7 17 17 C 1.50699 * 119.99809 * 4.88321 * 15 9 7 18 18 N 1.46498 * 109.46745 * 179.71144 * 17 15 9 19 19 C 1.34780 * 120.00006 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99472 * 359.97438 * 19 18 17 21 21 C 1.50694 * 120.00266 * 179.97438 * 19 18 17 22 22 C 1.53005 * 117.49926 * 248.61701 * 21 19 18 23 23 C 1.52997 * 60.00088 * 252.50911 * 22 21 19 24 24 H 0.96999 * 119.99906 * 4.99351 * 1 2 3 25 25 H 1.09004 * 109.46992 * 29.99597 * 10 9 7 26 26 H 1.08997 * 109.47277 * 149.99894 * 10 9 7 27 27 H 1.09002 * 109.47144 * 300.00308 * 11 10 9 28 28 H 1.09004 * 109.46980 * 59.99326 * 11 10 9 29 29 H 0.96705 * 117.00306 * 179.97438 * 14 12 11 30 30 H 1.08999 * 109.47462 * 59.70958 * 17 15 9 31 31 H 1.09004 * 109.47108 * 299.70442 * 17 15 9 32 32 H 0.97001 * 120.00322 * 359.97438 * 18 17 15 33 33 H 1.09003 * 115.55413 * 34.32604 * 21 19 18 34 34 H 1.09002 * 117.49611 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.50183 * 145.01894 * 22 21 19 36 36 H 1.08997 * 117.49876 * 252.50544 * 23 22 21 37 37 H 1.09008 * 117.51729 * 107.48100 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0257 -1.2396 -0.3629 9 7 1.4037 -2.3445 0.4588 10 6 0.4538 -2.2727 1.5719 11 6 1.2039 -2.4444 2.8944 12 6 0.2269 -2.3699 4.0393 13 8 -0.9486 -2.1968 3.8201 14 8 0.6626 -2.4959 5.3026 15 6 1.6826 -3.5324 -0.1134 16 8 1.0826 -4.5280 0.2327 17 6 2.7400 -3.6235 -1.1833 18 7 2.8580 -5.0118 -1.6362 19 6 3.7480 -5.3344 -2.5955 20 8 4.4509 -4.4752 -3.0841 21 6 3.8698 -6.7624 -3.0610 22 6 5.1576 -7.5116 -2.7126 23 6 4.8984 -7.0644 -4.1526 24 1 -0.4850 0.8369 -0.0731 25 1 -0.0462 -1.3042 1.5610 26 1 -0.2872 -3.0654 1.4689 27 1 1.7040 -3.4128 2.9054 28 1 1.9449 -1.6516 2.9973 29 1 -0.0014 -2.4408 6.0036 30 1 3.6959 -3.2908 -0.7788 31 1 2.4610 -2.9894 -2.0249 32 1 2.2961 -5.6990 -1.2451 33 1 2.9418 -7.3342 -3.0719 34 1 5.9165 -6.9716 -2.1464 35 1 5.0770 -8.5764 -2.4941 36 1 4.6473 -7.8350 -4.8815 37 1 5.4868 -6.2300 -4.5345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:23 Heat of formation + Delta-G solvation = -159.474051 kcal Electronic energy + Delta-G solvation = -22283.039175 eV Core-core repulsion = 18639.478984 eV Total energy + Delta-G solvation = -3643.560191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41947 -41.08649 -40.24941 -37.40254 -37.08431 -36.86295 -35.38322 -33.86462 -32.57256 -29.29431 -27.15864 -25.80436 -24.29304 -23.26220 -22.04299 -21.28937 -21.03746 -19.38334 -18.97856 -18.30904 -17.63107 -17.56557 -17.05932 -16.91495 -16.61217 -16.25031 -15.99061 -15.72223 -15.21182 -14.89350 -14.38738 -14.30520 -14.10965 -13.71960 -13.49186 -13.32214 -13.00625 -12.80349 -12.59292 -12.56170 -12.39387 -12.14023 -11.95613 -11.67426 -11.51545 -11.42788 -11.15969 -10.96506 -10.57179 -10.17141 -9.61800 -8.37029 -6.12847 1.18539 1.40483 1.48618 1.49870 1.58156 1.79158 1.91135 2.18702 2.34015 2.95292 2.98504 3.01109 3.74364 3.88266 3.96165 4.03668 4.05525 4.21055 4.28655 4.45251 4.49420 4.60373 4.71879 4.77381 4.93736 4.94713 5.06322 5.26194 5.30970 5.33375 5.49987 5.59535 5.86025 6.30749 6.55162 6.99775 7.01815 7.18936 7.41698 7.82445 8.64735 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.004724 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.263454 B = 5925.712343 C = 7349.613990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.437 5.437 10 C 0.125 3.875 11 C -0.116 4.116 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.456 3.544 16 O -0.621 6.621 17 C 0.130 3.870 18 N -0.706 5.706 19 C 0.535 3.465 20 O -0.588 6.588 21 C -0.205 4.205 22 C -0.138 4.138 23 C -0.145 4.145 24 H 0.275 0.725 25 H 0.098 0.902 26 H 0.043 0.957 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.427 0.573 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.414 0.586 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -8.846 1.868 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.124 0.876 9 N -0.154 5.154 10 C 0.001 3.999 11 C -0.155 4.155 12 C 0.339 3.661 13 O -0.440 6.440 14 O -0.320 6.320 15 C 0.246 3.754 16 O -0.509 6.509 17 C 0.003 3.997 18 N -0.360 5.360 19 C 0.323 3.677 20 O -0.469 6.469 21 C -0.226 4.226 22 C -0.176 4.176 23 C -0.182 4.182 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.289 0.711 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.252 0.748 33 H 0.165 0.835 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.242 -8.515 1.435 11.270 hybrid contribution -0.906 0.953 0.600 1.445 sum 6.337 -7.562 2.035 10.074 Atomic orbital electron populations 1.69960 1.07975 1.29319 1.44865 1.26203 0.95583 1.03050 0.94619 0.85170 0.78053 0.76561 0.79799 1.18985 1.21149 1.18392 1.19784 0.98620 0.85306 1.45921 0.87594 1.43512 1.38708 1.05882 1.27285 1.21072 0.91133 1.03977 0.83727 1.21595 0.97937 1.06014 0.89950 1.23334 0.87997 0.70630 0.84172 1.90710 1.20667 1.46774 1.85879 1.84501 1.46710 1.84194 1.16642 1.20676 0.86423 0.84160 0.84152 1.90496 1.55737 1.37250 1.67388 1.20643 0.98325 0.84010 0.96700 1.45767 1.40486 1.09953 1.39754 1.20389 0.78421 0.90866 0.77993 1.90657 1.46071 1.52096 1.58084 1.22233 0.98711 0.92489 1.09193 1.23065 0.94698 1.01469 0.98321 1.23038 0.99444 1.03422 0.92343 0.91499 0.88376 0.93864 0.87600 0.86451 0.71113 0.89154 0.90137 0.74777 0.83535 0.89380 0.84696 0.85084 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.26 11.34 21.66 0.25 -46.01 16 2 C 0.01 0.49 4.95 84.92 0.42 0.91 16 3 Si 0.98 37.98 29.61 68.60 2.03 40.01 16 4 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.37 -17.61 8.69 84.04 0.73 -16.88 16 8 H 0.11 4.77 7.01 -2.91 -0.02 4.75 16 9 N -0.44 -20.82 2.54 -635.53 -1.61 -22.43 16 10 C 0.13 5.87 4.34 86.38 0.37 6.24 16 11 C -0.12 -4.32 6.13 29.85 0.18 -4.14 16 12 C 0.50 17.11 8.33 71.23 0.59 17.70 16 13 O -0.55 -22.91 16.74 21.97 0.37 -22.54 16 14 O -0.51 -12.66 13.42 -51.38 -0.69 -13.35 16 15 C 0.46 20.89 7.70 87.66 0.67 21.56 16 16 O -0.62 -29.98 15.22 -3.06 -0.05 -30.02 16 17 C 0.13 5.25 4.76 85.63 0.41 5.66 16 18 N -0.71 -24.55 5.53 -466.79 -2.58 -27.13 16 19 C 0.53 17.68 7.61 87.65 0.67 18.35 16 20 O -0.59 -23.77 16.26 -3.04 -0.05 -23.82 16 21 C -0.21 -4.65 6.19 -11.54 -0.07 -4.72 16 22 C -0.14 -2.44 10.23 30.60 0.31 -2.13 16 23 C -0.15 -2.78 10.04 30.59 0.31 -2.47 16 24 H 0.28 13.69 8.32 -92.71 -0.77 12.92 16 25 H 0.10 5.10 5.32 -2.38 -0.01 5.09 16 26 H 0.04 2.20 7.32 -2.39 -0.02 2.18 16 27 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.12 4.09 8.14 -2.38 -0.02 4.07 16 29 H 0.43 6.38 9.10 -74.05 -0.67 5.71 16 30 H 0.09 3.53 7.78 -2.39 -0.02 3.51 16 31 H 0.08 3.48 8.05 -2.39 -0.02 3.46 16 32 H 0.41 13.56 7.44 -92.71 -0.69 12.87 16 33 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 2.05 7.67 -2.38 -0.02 2.03 16 Total: -1.00 -68.02 327.81 2.03 -65.99 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.24 Total: 39.22 kcal Atomic # 6 Polarization: 35.48 SS G_CDS: 4.60 Total: 40.08 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.95 Total: -95.58 kcal Atomic # 8 Polarization: -89.31 SS G_CDS: -0.42 Total: -89.73 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -68.02 2.03 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.481 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds