Wall clock time and date at job start Tue Mar 31 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99786 * 2 1 4 4 N 1.34768 * 119.99827 * 180.27404 * 2 1 3 5 5 C 1.47427 * 125.64929 * 0.02562 * 4 2 1 6 6 C 1.54918 * 104.83333 * 204.09100 * 5 4 2 7 7 C 1.55161 * 101.58040 * 322.99086 * 6 5 4 8 8 C 1.47023 * 125.64985 * 179.71762 * 4 2 1 9 9 H 1.09002 * 109.88107 * 59.55769 * 8 4 2 10 10 C 1.50701 * 109.88367 * 298.39804 * 8 4 2 11 11 O 1.21292 * 119.99500 * 341.44942 * 10 8 4 12 12 N 1.34771 * 120.00350 * 161.44829 * 10 8 4 13 13 C 1.37102 * 119.99868 * 179.97438 * 12 10 8 14 14 H 1.07994 * 120.00131 * 10.80034 * 13 12 10 15 15 C 1.38955 * 119.99686 * 190.79712 * 13 12 10 16 16 N 1.31404 * 120.00254 * 23.95522 * 15 13 12 17 17 Si 1.86803 * 119.99471 * 203.95700 * 15 13 12 18 18 H 1.48505 * 109.47012 * 90.00088 * 17 15 13 19 19 H 1.48503 * 109.46726 * 209.99936 * 17 15 13 20 20 H 1.48493 * 109.47333 * 329.99786 * 17 15 13 21 21 C 1.46500 * 120.00219 * 0.02562 * 12 10 8 22 22 C 1.50694 * 109.47317 * 87.94419 * 21 12 10 23 23 O 1.20825 * 120.00325 * 0.02562 * 22 21 12 24 24 O 1.34233 * 119.99627 * 180.02562 * 22 21 12 25 25 H 1.08998 * 109.47540 * 179.72838 * 1 2 3 26 26 H 1.09004 * 109.47108 * 299.72802 * 1 2 3 27 27 H 1.09000 * 109.47335 * 59.72028 * 1 2 3 28 28 H 1.08994 * 110.37079 * 322.93038 * 5 4 2 29 29 H 1.09007 * 110.36482 * 85.25651 * 5 4 2 30 30 H 1.09000 * 111.00198 * 81.06706 * 6 5 4 31 31 H 1.09001 * 111.00103 * 204.92178 * 6 5 4 32 32 H 1.08994 * 110.71797 * 153.86175 * 7 6 5 33 33 H 1.08997 * 110.72342 * 276.96476 * 7 6 5 34 34 H 0.97003 * 119.99903 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.47294 * 207.95118 * 21 12 10 36 36 H 1.09000 * 109.46637 * 327.94508 * 21 12 10 37 37 H 0.96708 * 116.99559 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1671 -0.0056 5 6 1.5729 -2.5102 -0.0125 6 6 2.6546 -3.4383 0.5945 7 6 3.9549 -2.8234 0.0126 8 6 3.6439 -1.3119 -0.0122 9 1 4.0677 -0.8336 0.8709 10 6 4.2150 -0.6888 -1.2598 11 8 3.4978 -0.4770 -2.2148 12 7 5.5225 -0.3668 -1.3145 13 6 6.0421 0.1997 -2.4498 14 1 5.3819 0.5479 -3.2303 15 6 7.4182 0.3257 -2.5961 16 7 8.2252 -0.4725 -1.9341 17 14 8.1207 1.6300 -3.7339 18 1 8.3364 2.8868 -2.9727 19 1 9.4153 1.1583 -4.2878 20 1 7.1691 1.8818 -4.8456 21 6 6.3889 -0.6230 -0.1613 22 6 6.9430 -2.0216 -0.2501 23 8 6.6452 -2.7314 -1.1815 24 8 7.7674 -2.4788 0.7054 25 1 -0.3634 -1.0276 -0.0049 26 1 -0.3633 0.5096 0.8924 27 1 -0.3634 0.5182 -0.8875 28 1 0.6735 -2.5228 0.6030 29 1 1.3399 -2.8158 -1.0326 30 1 2.6498 -3.3839 1.6832 31 1 2.5227 -4.4658 0.2556 32 1 4.8050 -3.0340 0.6614 33 1 4.1395 -3.1946 -0.9955 34 1 9.1858 -0.3843 -2.0359 35 1 7.2101 0.0937 -0.1574 36 1 5.8114 -0.5187 0.7573 37 1 8.0977 -3.3821 0.6050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603023360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:16 Heat of formation + Delta-G solvation = -133.523101 kcal Electronic energy + Delta-G solvation = -24257.316868 eV Core-core repulsion = 20614.881995 eV Total energy + Delta-G solvation = -3642.434873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.22886 -39.12112 -37.84644 -36.69627 -35.19325 -34.42458 -32.04480 -31.51049 -29.79003 -28.52327 -27.61892 -25.01259 -23.33432 -21.32337 -21.13983 -20.09263 -18.06948 -17.20486 -17.15142 -16.77314 -16.60224 -15.56135 -15.44546 -14.96760 -14.49880 -14.43173 -14.20020 -13.81628 -13.52179 -13.01093 -12.78763 -12.55595 -12.46925 -12.13737 -12.02753 -11.73828 -11.65194 -11.55743 -11.12235 -11.06976 -10.91275 -10.65790 -10.39833 -10.33116 -10.23207 -9.62946 -9.46137 -9.00783 -8.84916 -8.03405 -7.92201 -6.44539 -3.82307 2.99516 3.16772 3.26818 3.29575 3.34723 3.43234 3.66584 4.08950 4.24683 4.62276 4.69966 4.78380 4.99685 5.05296 5.19929 5.33056 5.41870 5.50794 5.52564 5.55453 5.73789 5.86933 5.91984 5.94679 6.03633 6.07786 6.38667 6.44342 6.60641 6.62480 7.47965 7.57256 7.86040 7.99629 8.39607 8.58547 9.02817 9.12312 9.33529 9.87312 10.64309 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.007256 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.042312 B = 3857.982274 C = 4925.538156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.528 3.472 3 O -0.535 6.535 4 N -0.598 5.598 5 C 0.101 3.899 6 C -0.131 4.131 7 C -0.116 4.116 8 C 0.120 3.880 9 H 0.083 0.917 10 C 0.462 3.538 11 O -0.565 6.565 12 N -0.429 5.429 13 C -0.298 4.298 14 H 0.108 0.892 15 C 0.028 3.972 16 N -0.884 5.884 17 Si 0.928 3.072 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.142 3.858 22 C 0.492 3.508 23 O -0.503 6.503 24 O -0.535 6.535 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 -6.379 9.669 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.317 3.683 3 O -0.411 6.411 4 N -0.333 5.333 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.154 4.154 8 C 0.013 3.987 9 H 0.101 0.899 10 C 0.249 3.751 11 O -0.447 6.447 12 N -0.149 5.149 13 C -0.425 4.425 14 H 0.126 0.874 15 C -0.174 4.174 16 N -0.524 5.524 17 Si 0.755 3.245 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.194 1.194 21 C 0.015 3.985 22 C 0.332 3.668 23 O -0.388 6.388 24 O -0.346 6.346 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.019 -5.409 8.942 13.173 hybrid contribution 1.003 -0.213 -0.677 1.229 sum -7.016 -5.623 8.265 12.213 Atomic orbital electron populations 1.21839 0.91876 1.03894 1.04828 1.20334 0.90030 0.82197 0.75732 1.90736 1.70458 1.30561 1.49380 1.48244 1.05770 1.05844 1.73475 1.22330 0.96461 0.82230 1.01141 1.22792 0.94531 0.99037 1.00586 1.22620 0.97501 0.91936 1.03355 1.21518 0.81853 0.97104 0.98245 0.89933 1.19992 0.83176 0.82858 0.89085 1.90509 1.58963 1.56890 1.38313 1.43429 1.05537 1.52909 1.13023 1.19738 0.90910 1.33813 0.98024 0.87397 1.25161 0.95842 0.97644 0.98716 1.69777 1.04301 1.34021 1.44331 0.85882 0.78034 0.80587 0.79994 1.20242 1.21144 1.19398 1.20790 0.96614 0.92094 0.88994 1.23764 0.74871 0.89634 0.78493 1.90598 1.58110 1.58098 1.31976 1.84542 1.62102 1.36276 1.51659 0.90759 0.89215 0.88848 0.90452 0.91147 0.90559 0.89703 0.90401 0.89181 0.91894 0.85223 0.90715 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.19 36.01 0.37 -1.65 16 2 C 0.53 9.80 7.36 -10.99 -0.08 9.72 16 3 O -0.54 -12.60 16.91 5.56 0.09 -12.51 16 4 N -0.60 -10.52 2.75 -164.31 -0.45 -10.97 16 5 C 0.10 1.28 6.39 -2.52 -0.02 1.26 16 6 C -0.13 -1.52 7.09 -24.58 -0.17 -1.69 16 7 C -0.12 -1.90 4.78 -24.89 -0.12 -2.02 16 8 C 0.12 2.37 2.48 -68.10 -0.17 2.20 16 9 H 0.08 1.56 6.37 -51.93 -0.33 1.23 16 10 C 0.46 11.81 6.03 -10.99 -0.07 11.75 16 11 O -0.56 -16.49 15.74 5.55 0.09 -16.40 16 12 N -0.43 -11.27 2.12 -116.10 -0.25 -11.52 16 13 C -0.30 -8.53 9.41 -14.93 -0.14 -8.67 16 14 H 0.11 3.30 7.32 -52.49 -0.38 2.92 16 15 C 0.03 0.75 4.89 -17.47 -0.09 0.67 16 16 N -0.88 -23.34 9.08 55.50 0.50 -22.83 16 17 Si 0.93 21.27 29.62 -169.99 -5.03 16.23 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 C 0.14 3.18 4.99 -5.20 -0.03 3.15 16 22 C 0.49 10.63 4.52 36.00 0.16 10.79 16 23 O -0.50 -12.44 15.56 -18.75 -0.29 -12.73 16 24 O -0.53 -9.32 13.42 -39.27 -0.53 -9.85 16 25 H 0.07 0.70 6.09 -51.93 -0.32 0.38 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.70 6.94 -51.93 -0.36 0.34 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.20 6.86 -51.93 -0.36 0.84 16 33 H 0.09 1.76 7.41 -51.93 -0.39 1.37 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.13 3.05 6.29 -51.93 -0.33 2.73 16 36 H 0.08 1.42 6.05 -51.93 -0.31 1.10 16 37 H 0.39 5.14 9.10 45.56 0.41 5.55 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -37.59 306.10 -5.21 -42.80 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.61 Total: 7.67 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: -0.35 Total: 25.50 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.20 Total: -45.32 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.64 Total: -51.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.59 -5.21 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603023360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.727 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds