Wall clock time and date at job start Tue Mar 31 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99786 * 2 1 4 4 N 1.34768 * 119.99827 * 180.27404 * 2 1 3 5 5 C 1.47427 * 125.64929 * 0.02562 * 4 2 1 6 6 C 1.54918 * 104.83333 * 204.09100 * 5 4 2 7 7 C 1.55161 * 101.58040 * 322.99086 * 6 5 4 8 8 C 1.47023 * 125.64985 * 179.71762 * 4 2 1 9 9 H 1.09002 * 109.88107 * 59.55769 * 8 4 2 10 10 C 1.50701 * 109.88367 * 298.39804 * 8 4 2 11 11 O 1.21292 * 119.99500 * 341.44942 * 10 8 4 12 12 N 1.34771 * 120.00350 * 161.44829 * 10 8 4 13 13 C 1.37102 * 119.99868 * 179.97438 * 12 10 8 14 14 H 1.07994 * 120.00131 * 10.80034 * 13 12 10 15 15 C 1.38955 * 119.99686 * 190.79712 * 13 12 10 16 16 N 1.31404 * 120.00254 * 23.95522 * 15 13 12 17 17 Si 1.86803 * 119.99471 * 203.95700 * 15 13 12 18 18 H 1.48505 * 109.47012 * 90.00088 * 17 15 13 19 19 H 1.48503 * 109.46726 * 209.99936 * 17 15 13 20 20 H 1.48493 * 109.47333 * 329.99786 * 17 15 13 21 21 C 1.46500 * 120.00219 * 0.02562 * 12 10 8 22 22 C 1.50694 * 109.47317 * 87.94419 * 21 12 10 23 23 O 1.20825 * 120.00325 * 0.02562 * 22 21 12 24 24 O 1.34233 * 119.99627 * 180.02562 * 22 21 12 25 25 H 1.08998 * 109.47540 * 179.72838 * 1 2 3 26 26 H 1.09004 * 109.47108 * 299.72802 * 1 2 3 27 27 H 1.09000 * 109.47335 * 59.72028 * 1 2 3 28 28 H 1.08994 * 110.37079 * 322.93038 * 5 4 2 29 29 H 1.09007 * 110.36482 * 85.25651 * 5 4 2 30 30 H 1.09000 * 111.00198 * 81.06706 * 6 5 4 31 31 H 1.09001 * 111.00103 * 204.92178 * 6 5 4 32 32 H 1.08994 * 110.71797 * 153.86175 * 7 6 5 33 33 H 1.08997 * 110.72342 * 276.96476 * 7 6 5 34 34 H 0.97003 * 119.99903 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.47294 * 207.95118 * 21 12 10 36 36 H 1.09000 * 109.46637 * 327.94508 * 21 12 10 37 37 H 0.96708 * 116.99559 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1671 -0.0056 5 6 1.5729 -2.5102 -0.0125 6 6 2.6546 -3.4383 0.5945 7 6 3.9549 -2.8234 0.0126 8 6 3.6439 -1.3119 -0.0122 9 1 4.0677 -0.8336 0.8709 10 6 4.2150 -0.6888 -1.2598 11 8 3.4978 -0.4770 -2.2148 12 7 5.5225 -0.3668 -1.3145 13 6 6.0421 0.1997 -2.4498 14 1 5.3819 0.5479 -3.2303 15 6 7.4182 0.3257 -2.5961 16 7 8.2252 -0.4725 -1.9341 17 14 8.1207 1.6300 -3.7339 18 1 8.3364 2.8868 -2.9727 19 1 9.4153 1.1583 -4.2878 20 1 7.1691 1.8818 -4.8456 21 6 6.3889 -0.6230 -0.1613 22 6 6.9430 -2.0216 -0.2501 23 8 6.6452 -2.7314 -1.1815 24 8 7.7674 -2.4788 0.7054 25 1 -0.3634 -1.0276 -0.0049 26 1 -0.3633 0.5096 0.8924 27 1 -0.3634 0.5182 -0.8875 28 1 0.6735 -2.5228 0.6030 29 1 1.3399 -2.8158 -1.0326 30 1 2.6498 -3.3839 1.6832 31 1 2.5227 -4.4658 0.2556 32 1 4.8050 -3.0340 0.6614 33 1 4.1395 -3.1946 -0.9955 34 1 9.1858 -0.3843 -2.0359 35 1 7.2101 0.0937 -0.1574 36 1 5.8114 -0.5187 0.7573 37 1 8.0977 -3.3821 0.6050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603023360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:15 Heat of formation + Delta-G solvation = -162.930979 kcal Electronic energy + Delta-G solvation = -24258.592089 eV Core-core repulsion = 20614.881995 eV Total energy + Delta-G solvation = -3643.710095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.81130 -40.73743 -39.59757 -38.14611 -36.98350 -36.31188 -33.92618 -32.98521 -31.04807 -29.83708 -29.37248 -26.90192 -24.72834 -22.90552 -22.53975 -21.62862 -19.63810 -19.06075 -18.86942 -18.48195 -18.02711 -17.26902 -16.99392 -16.59404 -16.24171 -16.04307 -15.82415 -15.31469 -15.20486 -14.44097 -14.24177 -13.96306 -13.70946 -13.64956 -13.49254 -13.41220 -13.23101 -12.95308 -12.73477 -12.60250 -12.38247 -12.19946 -12.17152 -11.96871 -11.79154 -11.51211 -10.96245 -10.92394 -10.62632 -9.95339 -9.61761 -8.50709 -5.96913 1.30702 1.36454 1.47871 1.61441 1.67983 1.85272 2.03546 2.25083 2.50109 2.88268 3.08199 3.46375 3.60467 3.76572 3.89278 3.97869 4.12857 4.28509 4.45923 4.53448 4.63969 4.69747 4.71052 4.79400 4.84204 4.91751 5.00996 5.05596 5.20368 5.31975 5.39309 5.92413 5.97226 6.33482 6.59088 7.05281 7.20729 7.27153 7.46746 7.88780 8.55696 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.007256 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.042312 B = 3857.982274 C = 4925.538156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.510 3.490 3 O -0.602 6.602 4 N -0.602 5.602 5 C 0.092 3.908 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.122 3.878 9 H 0.089 0.911 10 C 0.446 3.554 11 O -0.619 6.619 12 N -0.442 5.442 13 C -0.343 4.343 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.886 5.886 17 Si 0.989 3.011 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.282 1.282 21 C 0.138 3.862 22 C 0.504 3.496 23 O -0.538 6.538 24 O -0.517 6.517 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.277 0.723 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 -7.929 11.858 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.302 3.698 3 O -0.483 6.483 4 N -0.336 5.336 5 C -0.029 4.029 6 C -0.151 4.151 7 C -0.149 4.149 8 C 0.014 3.986 9 H 0.107 0.893 10 C 0.235 3.765 11 O -0.505 6.505 12 N -0.161 5.161 13 C -0.471 4.471 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.525 5.525 17 Si 0.812 3.188 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.208 1.208 21 C 0.012 3.988 22 C 0.346 3.654 23 O -0.426 6.426 24 O -0.330 6.330 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.429 -7.035 11.194 15.679 hybrid contribution 1.219 0.218 -1.339 1.824 sum -7.210 -6.817 9.855 13.984 Atomic orbital electron populations 1.21872 0.86758 1.06616 1.05883 1.21610 0.92540 0.81470 0.74188 1.90694 1.72248 1.32946 1.52368 1.48543 1.04977 1.07746 1.72296 1.22722 0.98495 0.79663 1.02002 1.22863 0.90446 0.99702 1.02100 1.22545 1.00811 0.89700 1.01887 1.21494 0.83565 0.98710 0.94874 0.89334 1.21124 0.82747 0.81951 0.90648 1.90444 1.60126 1.59077 1.40835 1.43570 1.06501 1.52835 1.13235 1.19522 0.91455 1.37033 0.99071 0.91262 1.25856 0.95253 0.98619 1.00024 1.69833 1.04639 1.33751 1.44289 0.85017 0.77240 0.78542 0.77973 1.18754 1.19569 1.20751 1.20860 0.96337 0.92613 0.88968 1.23362 0.74732 0.88971 0.78309 1.90599 1.59444 1.58970 1.33603 1.84452 1.60746 1.38088 1.49711 0.87166 0.86721 0.89061 0.85487 0.92015 0.87500 0.86989 0.89361 0.92993 0.91237 0.86492 0.87475 0.72526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.19 71.24 0.73 -2.65 16 2 C 0.51 18.84 7.36 87.66 0.64 19.49 16 3 O -0.60 -29.45 16.91 -3.02 -0.05 -29.51 16 4 N -0.60 -20.63 2.75 -792.15 -2.18 -22.81 16 5 C 0.09 2.03 6.39 86.86 0.55 2.58 16 6 C -0.11 -2.19 7.09 31.99 0.23 -1.96 16 7 C -0.11 -3.52 4.78 31.79 0.15 -3.37 16 8 C 0.12 4.82 2.48 44.60 0.11 4.93 16 9 H 0.09 3.33 6.37 -2.39 -0.02 3.31 16 10 C 0.45 23.98 6.03 87.66 0.53 24.51 16 11 O -0.62 -38.64 15.74 -3.07 -0.05 -38.68 16 12 N -0.44 -24.31 2.12 -639.62 -1.36 -25.67 16 13 C -0.34 -20.80 9.41 84.04 0.79 -20.01 16 14 H 0.07 4.62 7.32 -2.91 -0.02 4.60 16 15 C 0.00 0.23 4.89 84.93 0.42 0.65 16 16 N -0.89 -46.86 9.08 21.66 0.20 -46.66 16 17 Si 0.99 44.37 29.62 68.60 2.03 46.40 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 C 0.14 6.25 4.99 85.63 0.43 6.68 16 22 C 0.50 21.52 4.52 71.23 0.32 21.84 16 23 O -0.54 -26.84 15.56 21.97 0.34 -26.50 16 24 O -0.52 -16.84 13.42 -51.44 -0.69 -17.53 16 25 H 0.11 1.59 6.09 -2.39 -0.01 1.58 16 26 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.13 1.58 6.94 -2.39 -0.02 1.56 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.56 6.86 -2.39 -0.02 2.54 16 33 H 0.05 2.06 7.41 -2.39 -0.02 2.04 16 34 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.12 5.58 6.29 -2.39 -0.02 5.56 16 36 H 0.11 4.04 6.05 -2.39 -0.01 4.02 16 37 H 0.42 9.70 9.10 -74.05 -0.67 9.02 16 Total: -1.00 -89.76 306.10 3.59 -86.17 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.45 Total: 22.10 kcal Atomic # 6 Polarization: 47.79 SS G_CDS: 4.90 Total: 52.69 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.34 Total: -95.15 kcal Atomic # 8 Polarization: -111.77 SS G_CDS: -0.45 Total: -112.22 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -89.76 3.59 -86.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603023360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.757 kcal (2) G-P(sol) polarization free energy of solvation -89.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds