Wall clock time and date at job start Tue Mar 31 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21630 * 120.00269 * 359.71479 * 16 15 14 18 18 C 1.47176 * 120.00200 * 179.71841 * 16 15 14 19 19 C 1.38245 * 128.48021 * 179.97438 * 18 16 15 20 20 N 1.31231 * 111.89048 * 180.02562 * 19 18 16 21 21 N 1.27341 * 120.03996 * 359.97438 * 20 19 18 22 22 S 1.56638 * 109.73776 * 359.70115 * 21 20 19 23 23 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 25 25 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 27 27 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 28 28 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 29 29 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 30 30 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 32 32 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 33 33 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 34 34 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 35 35 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 36 36 H 1.08006 * 124.05085 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2519 -1.9230 -3.3664 18 6 6.2865 -0.7071 -5.0653 19 6 6.7114 -1.7154 -5.9103 20 7 7.3368 -1.2412 -6.9621 21 7 7.4861 0.0156 -7.1021 22 16 6.8297 0.7643 -5.8928 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.4216 3.6257 0.7815 31 1 5.1894 2.0597 -1.0871 32 1 3.6475 2.1422 -1.9726 33 1 3.5392 -0.3348 -2.0147 34 1 5.0810 -0.4172 -1.1291 35 1 5.4665 1.1577 -3.4415 36 1 6.5482 -2.7671 -5.7267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691175814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:14 Heat of formation + Delta-G solvation = 48.743319 kcal Electronic energy + Delta-G solvation = -19847.509451 eV Core-core repulsion = 16688.023864 eV Total energy + Delta-G solvation = -3159.485586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96271 -39.34742 -36.59210 -34.49168 -32.96936 -32.28347 -30.89409 -28.80530 -27.22241 -25.63161 -24.00186 -22.57302 -21.02641 -20.68926 -20.16603 -19.31414 -17.53632 -16.68161 -16.05895 -15.83578 -15.22424 -14.88162 -14.75037 -14.37595 -14.07930 -13.82523 -13.08770 -12.89538 -12.85748 -12.75794 -12.13002 -11.65011 -11.61500 -11.26701 -11.00956 -10.78925 -10.55412 -10.47500 -10.44869 -10.26340 -10.21112 -10.08226 -10.01873 -9.99706 -9.71999 -8.80654 -8.56135 -6.71216 -5.92133 -3.50971 -0.42257 0.64197 1.30663 1.82145 3.01101 3.10382 3.31614 3.36899 3.40681 3.85919 4.39154 4.54386 4.73216 5.18684 5.38768 5.40392 5.60920 5.69411 5.90906 5.99409 6.08185 6.21836 6.31760 6.43293 6.53524 6.57634 6.60077 6.86276 6.91548 7.11028 7.37623 7.43041 7.57767 7.72993 8.14461 8.39652 9.05858 9.67583 10.25105 11.08283 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004603 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.921092 B = 6081.495549 C = 7144.035847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.136 3.864 14 C 0.095 3.905 15 N -0.707 5.707 16 C 0.591 3.409 17 O -0.522 6.522 18 C -0.275 4.275 19 C 0.066 3.934 20 N -0.253 5.253 21 N -0.264 5.264 22 S 0.423 5.577 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.256 0.744 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -2.942 -10.640 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.008 3.992 14 C -0.029 4.029 15 N -0.357 5.357 16 C 0.373 3.627 17 O -0.399 6.399 18 C -0.416 4.416 19 C -0.100 4.100 20 N -0.118 5.118 21 N -0.245 5.245 22 S 0.558 5.442 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.231 0.769 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.492 -2.250 -11.510 11.738 hybrid contribution 0.373 -1.176 1.219 1.734 sum -0.119 -3.426 -10.291 10.847 Atomic orbital electron populations 1.21722 0.97291 1.00447 1.01028 1.22187 0.93868 1.00884 1.01580 1.20955 0.84921 0.93010 0.99028 1.43585 0.99480 1.84743 1.01961 1.18989 1.05734 1.20624 0.93984 0.92004 1.25174 1.00781 0.94456 0.98080 1.69969 1.25773 1.14657 1.42493 0.86477 0.80988 0.78311 0.81699 1.20751 1.21547 1.20538 1.21082 1.00584 0.90898 0.86637 1.22681 0.94954 1.03494 0.81819 1.46088 1.57336 1.07628 1.24657 1.16561 0.79229 0.85451 0.81441 1.90847 1.54401 1.26105 1.68530 1.28296 1.11224 0.97777 1.04344 1.24455 0.94748 1.02980 0.87861 1.70687 1.16382 1.03668 1.21047 1.78843 1.20782 1.04063 1.20800 1.82702 1.36446 1.15459 1.09628 0.93180 0.93458 0.93783 0.92959 0.92304 0.93474 0.94697 0.93363 0.88241 0.95062 0.92321 0.91073 0.76923 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.15 -2.51 6.23 -26.73 -0.17 -2.67 16 3 C 0.15 2.88 5.72 -4.04 -0.02 2.86 16 4 N -0.58 -13.18 2.43 -173.24 -0.42 -13.61 16 5 C -0.26 -6.74 9.45 -15.06 -0.14 -6.88 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 7 C 0.02 0.41 4.95 -17.43 -0.09 0.32 16 8 N -0.89 -23.64 11.47 55.49 0.64 -23.01 16 9 Si 0.90 20.62 29.60 -169.99 -5.03 15.58 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.14 2.79 5.45 -4.04 -0.02 2.76 16 14 C 0.10 1.76 6.00 -4.04 -0.02 1.73 16 15 N -0.71 -10.67 5.55 -61.46 -0.34 -11.01 16 16 C 0.59 9.05 7.80 -12.63 -0.10 8.95 16 17 O -0.52 -9.74 16.98 5.25 0.09 -9.65 16 18 C -0.27 -3.39 6.81 -35.95 -0.25 -3.63 16 19 C 0.07 0.77 11.55 -17.81 -0.21 0.57 16 20 N -0.25 -3.24 11.54 30.36 0.35 -2.89 16 21 N -0.26 -3.27 12.51 60.35 0.75 -2.51 16 22 S 0.42 4.29 23.05 -107.50 -2.48 1.81 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.92 6.64 -51.93 -0.34 0.57 16 27 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.10 2.31 5.52 -51.93 -0.29 2.02 16 32 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 33 H 0.06 1.10 6.64 -51.93 -0.34 0.75 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.40 4.99 7.90 -40.82 -0.32 4.67 16 36 H 0.22 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -29.28 323.81 -6.83 -36.10 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.62 Total: 1.99 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.65 Total: 2.31 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.98 Total: -53.03 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.58 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -2.48 Total: 1.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.28 -6.83 -36.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691175814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.847 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds