Wall clock time and date at job start Tue Mar 31 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21630 * 120.00269 * 359.71479 * 16 15 14 18 18 C 1.47176 * 120.00200 * 179.71841 * 16 15 14 19 19 C 1.38245 * 128.48021 * 179.97438 * 18 16 15 20 20 N 1.31231 * 111.89048 * 180.02562 * 19 18 16 21 21 N 1.27341 * 120.03996 * 359.97438 * 20 19 18 22 22 S 1.56638 * 109.73776 * 359.70115 * 21 20 19 23 23 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 25 25 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 27 27 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 28 28 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 29 29 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 30 30 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 32 32 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 33 33 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 34 34 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 35 35 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 36 36 H 1.08006 * 124.05085 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2519 -1.9230 -3.3664 18 6 6.2865 -0.7071 -5.0653 19 6 6.7114 -1.7154 -5.9103 20 7 7.3368 -1.2412 -6.9621 21 7 7.4861 0.0156 -7.1021 22 16 6.8297 0.7643 -5.8928 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.4216 3.6257 0.7815 31 1 5.1894 2.0597 -1.0871 32 1 3.6475 2.1422 -1.9726 33 1 3.5392 -0.3348 -2.0147 34 1 5.0810 -0.4172 -1.1291 35 1 5.4665 1.1577 -3.4415 36 1 6.5482 -2.7671 -5.7267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691175814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:14 Heat of formation + Delta-G solvation = 29.485160 kcal Electronic energy + Delta-G solvation = -19848.344547 eV Core-core repulsion = 16688.023864 eV Total energy + Delta-G solvation = -3160.320683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92864 -40.62822 -38.23924 -35.89365 -34.59047 -33.33645 -32.55137 -30.21145 -28.36603 -27.31644 -25.43491 -23.81210 -22.54935 -21.94445 -21.61678 -20.30901 -18.86713 -18.29355 -17.15750 -17.13684 -16.88685 -16.28211 -15.98297 -15.74686 -15.56455 -15.20793 -14.66529 -14.33700 -14.31347 -13.85334 -13.32564 -13.07025 -13.03777 -12.90475 -12.62234 -12.50328 -12.21665 -12.02820 -11.84859 -11.68618 -11.54281 -11.32566 -11.20434 -11.20019 -10.94542 -10.52092 -10.16306 -8.57367 -7.84822 -5.47248 -1.38533 -0.27041 0.39488 0.85450 1.46045 1.49860 1.55252 1.82581 1.88034 2.51072 2.93054 3.22853 3.54745 3.62871 3.81975 4.24349 4.33390 4.40286 4.52920 4.57027 4.70429 4.74596 4.87882 5.02692 5.13102 5.23372 5.26233 5.30272 5.47031 5.65282 5.67236 5.75222 6.28530 6.47574 6.53348 6.92839 7.17224 7.84193 8.35909 9.10949 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004603 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.921092 B = 6081.495549 C = 7144.035847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.051 0.949 7 C -0.023 4.023 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.141 3.859 14 C 0.117 3.883 15 N -0.701 5.701 16 C 0.599 3.401 17 O -0.559 6.559 18 C -0.302 4.302 19 C 0.079 3.921 20 N -0.273 5.273 21 N -0.285 5.285 22 S 0.504 5.496 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.411 0.589 36 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -2.785 -11.683 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.401 4.401 6 H 0.069 0.931 7 C -0.222 4.222 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.014 3.986 14 C -0.008 4.008 15 N -0.353 5.353 16 C 0.382 3.618 17 O -0.439 6.439 18 C -0.443 4.443 19 C -0.089 4.089 20 N -0.136 5.136 21 N -0.266 5.266 22 S 0.639 5.361 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.247 0.753 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.846 -2.075 -12.582 12.780 hybrid contribution 0.458 -1.160 1.497 1.948 sum -0.388 -3.235 -11.085 11.554 Atomic orbital electron populations 1.21659 0.94429 1.01732 1.01950 1.22019 0.96285 0.98776 1.00399 1.21057 0.83281 0.94535 0.99134 1.43815 1.00852 1.85030 1.01919 1.19112 1.06216 1.19992 0.94808 0.93097 1.25683 1.01998 0.94676 0.99832 1.70053 1.25986 1.15384 1.43766 0.85681 0.79236 0.77480 0.80083 1.21173 1.21511 1.20247 1.20974 0.99516 0.91798 0.86328 1.22130 0.94670 1.01548 0.82493 1.45859 1.57177 1.08589 1.23644 1.16735 0.78508 0.84587 0.81925 1.90826 1.55894 1.27388 1.69757 1.27928 1.12764 0.99806 1.03777 1.24744 0.93382 1.03733 0.87062 1.70767 1.17385 1.03832 1.21650 1.78652 1.21372 1.04431 1.22164 1.82423 1.33659 1.12875 1.07154 0.92757 0.92048 0.92341 0.93302 0.94311 0.94779 0.93046 0.93608 0.90612 0.93246 0.92310 0.94244 0.75318 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.13 -4.55 6.23 30.59 0.19 -4.36 16 3 C 0.15 5.60 5.72 86.38 0.49 6.10 16 4 N -0.60 -27.22 2.43 -702.00 -1.71 -28.93 16 5 C -0.27 -14.01 9.45 84.03 0.79 -13.22 16 6 H 0.05 2.69 7.92 -2.91 -0.02 2.67 16 7 C -0.02 -1.22 4.95 84.86 0.42 -0.80 16 8 N -0.91 -48.66 11.47 21.65 0.25 -48.41 16 9 Si 0.95 42.68 29.60 68.60 2.03 44.71 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.14 5.75 5.45 86.38 0.47 6.22 16 14 C 0.12 4.32 6.00 86.38 0.52 4.84 16 15 N -0.70 -20.54 5.55 -466.61 -2.59 -23.13 16 16 C 0.60 17.80 7.80 86.59 0.68 18.47 16 17 O -0.56 -20.76 16.98 -4.13 -0.07 -20.83 16 18 C -0.30 -6.95 6.81 24.62 0.17 -6.78 16 19 C 0.08 1.71 11.55 84.78 0.98 2.69 16 20 N -0.27 -6.53 11.54 -57.87 -0.67 -7.20 16 21 N -0.28 -6.48 12.51 37.02 0.46 -6.02 16 22 S 0.50 9.01 23.05 -56.49 -1.30 7.71 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.05 1.67 6.64 -2.39 -0.02 1.65 16 27 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 29 H 0.05 1.80 7.83 -2.39 -0.02 1.78 16 30 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.08 3.52 5.52 -2.39 -0.01 3.51 16 32 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 33 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 9.67 7.90 -92.71 -0.73 8.94 16 36 H 0.23 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -62.53 323.81 2.20 -60.34 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.37 Total: 11.52 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.42 Total: 10.25 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.26 Total: -113.69 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.07 Total: -20.83 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 9.01 SS G_CDS: -1.30 Total: 7.71 kcal Total: -62.53 2.20 -60.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691175814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.820 kcal (2) G-P(sol) polarization free energy of solvation -62.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds