Wall clock time and date at job start Tue Mar 31 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46349 * 111.00263 * 2 1 4 4 C 1.53775 * 111.83773 * 178.39138 * 3 2 1 5 5 C 1.51963 * 106.99779 * 56.99688 * 4 3 2 6 6 H 1.08998 * 111.07919 * 59.59569 * 5 4 3 7 7 C 1.53574 * 115.61563 * 187.47556 * 5 4 3 8 8 C 1.55401 * 101.70386 * 153.11907 * 7 5 4 9 9 N 1.48304 * 107.00749 * 337.45641 * 8 7 5 10 10 C 1.34771 * 126.51053 * 174.61490 * 9 8 7 11 11 O 1.21284 * 120.00353 * 180.02562 * 10 9 8 12 12 C 1.50703 * 119.99952 * 0.02562 * 10 9 8 13 13 S 1.80990 * 109.47384 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00278 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99888 * 359.97438 * 14 13 12 16 16 C 1.38797 * 120.00452 * 179.97438 * 14 13 12 17 17 N 1.31633 * 120.00292 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99660 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99524 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99704 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99697 * 18 16 14 22 22 C 1.45209 * 106.98901 * 354.87185 * 9 8 7 23 23 H 1.08997 * 109.07661 * 274.69755 * 22 9 8 24 24 C 1.47726 * 110.99912 * 232.76627 * 2 1 3 25 25 H 1.09003 * 109.46837 * 56.04616 * 1 2 3 26 26 H 1.09000 * 109.47129 * 176.04229 * 1 2 3 27 27 H 1.08993 * 109.47634 * 296.05004 * 1 2 3 28 28 H 1.09005 * 109.00311 * 57.78052 * 3 2 1 29 29 H 1.08995 * 108.94250 * 298.95922 * 3 2 1 30 30 H 1.09001 * 109.94979 * 297.62812 * 4 3 2 31 31 H 1.08997 * 110.01768 * 176.41246 * 4 3 2 32 32 H 1.09006 * 110.98273 * 35.01061 * 7 5 4 33 33 H 1.09001 * 110.98234 * 271.22139 * 7 5 4 34 34 H 1.09001 * 109.92875 * 218.12035 * 8 7 5 35 35 H 1.09002 * 110.10177 * 96.88909 * 8 7 5 36 36 H 1.09001 * 109.47050 * 59.99941 * 12 10 9 37 37 H 1.08999 * 109.47014 * 300.00996 * 12 10 9 38 38 H 0.96997 * 119.99773 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.91736 * 303.71897 * 24 2 1 40 40 H 1.08997 * 109.91174 * 64.88638 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5306 1.3889 0.0401 5 6 4.0180 0.5917 -1.1584 6 1 3.6581 1.0263 -2.0909 7 6 5.5311 0.3346 -1.2139 8 6 5.5970 -0.9828 -2.0354 9 7 4.2770 -1.6450 -1.9000 10 6 3.8714 -2.7622 -2.5354 11 8 2.7595 -3.2037 -2.3358 12 6 4.7995 -3.4630 -3.4939 13 16 3.9712 -4.9184 -4.1805 14 6 5.2456 -5.5274 -5.2339 15 1 6.1900 -5.0071 -5.2953 16 6 5.0359 -6.6758 -5.9847 17 7 5.9882 -7.1310 -6.7712 18 14 3.4022 -7.5753 -5.8790 19 1 3.4661 -8.5925 -4.7989 20 1 3.1215 -8.2456 -7.1741 21 1 2.3202 -6.6032 -5.5800 22 6 3.5020 -0.8578 -0.9576 23 1 3.7409 -1.1791 0.0562 24 6 1.9984 -0.8345 -1.0980 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3634 0.4513 0.9232 28 1 1.6077 1.8946 0.8719 29 1 1.6543 1.8755 -0.9020 30 1 3.8854 0.9284 0.9621 31 1 3.8904 2.4157 -0.0249 32 1 5.9397 0.1917 -0.2135 33 1 6.0457 1.1438 -1.7320 34 1 6.3795 -1.6295 -1.6383 35 1 5.7954 -0.7609 -3.0840 36 1 5.7010 -3.7731 -2.9655 37 1 5.0680 -2.7830 -4.3023 38 1 5.8415 -7.9333 -7.2962 39 1 1.6003 -1.8462 -1.0206 40 1 1.7253 -0.3997 -2.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334398644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:54 Heat of formation + Delta-G solvation = -48.432889 kcal Electronic energy + Delta-G solvation = -20659.492823 eV Core-core repulsion = 17599.333704 eV Total energy + Delta-G solvation = -3060.159119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79786 -39.61246 -37.58245 -34.69589 -34.11434 -32.02855 -31.29153 -29.77116 -27.87113 -27.09210 -24.45896 -24.06203 -22.49301 -21.21653 -20.54711 -19.46716 -17.96059 -17.35725 -17.12030 -16.79859 -16.30638 -15.97659 -15.83542 -15.66457 -15.30646 -14.93618 -14.75822 -14.56479 -13.95662 -13.68872 -13.58218 -13.37678 -13.28462 -13.04122 -13.00927 -12.90784 -12.66936 -12.47941 -12.14978 -11.89616 -11.68070 -11.60651 -11.33787 -11.18987 -10.75469 -10.56570 -9.72023 -9.34112 -9.03068 -8.53576 -6.24943 0.93746 1.29741 1.43006 1.48595 1.51258 1.98019 2.23284 2.64193 2.84680 2.91481 3.23737 3.56115 3.76918 3.77317 4.04463 4.06549 4.12854 4.18095 4.31666 4.36624 4.40878 4.45324 4.52652 4.63849 4.69989 4.72946 4.90188 4.93250 4.94482 4.95590 5.05982 5.08026 5.18688 5.33015 5.45355 5.68880 5.94542 6.09115 6.13537 6.37363 6.91544 7.05581 8.58969 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.004029 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.062444 B = 6947.795284 C = 7805.980973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.097 4.097 5 C -0.101 4.101 6 H 0.077 0.923 7 C -0.108 4.108 8 C 0.089 3.911 9 N -0.610 5.610 10 C 0.546 3.454 11 O -0.558 6.558 12 C -0.101 4.101 13 S -0.174 6.174 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.257 1.257 21 H -0.239 1.239 22 C 0.128 3.872 23 H 0.072 0.928 24 C 0.070 3.930 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.278 0.722 39 H 0.064 0.936 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 22.048 15.284 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.286 5.286 3 C -0.074 4.074 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.095 0.905 7 C -0.145 4.145 8 C -0.033 4.033 9 N -0.345 5.345 10 C 0.334 3.666 11 O -0.436 6.436 12 C -0.252 4.252 13 S 0.053 5.947 14 C -0.677 4.677 15 H 0.080 0.920 16 C -0.158 4.158 17 N -0.554 5.554 18 Si 0.735 3.265 19 H -0.186 1.186 20 H -0.181 1.181 21 H -0.163 1.163 22 C 0.024 3.976 23 H 0.090 0.910 24 C -0.058 4.058 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.005 20.995 15.823 26.762 hybrid contribution 0.582 -0.261 -1.582 1.706 sum -4.423 20.733 14.241 25.539 Atomic orbital electron populations 1.22323 0.85871 1.01823 1.01678 1.61207 1.08606 1.14037 1.44785 1.22202 0.96302 0.87485 1.01415 1.21509 0.93386 1.01525 0.97052 1.22268 0.96583 0.92984 1.00159 0.90462 1.22527 0.94900 0.95455 1.01633 1.22857 0.83082 0.95154 1.02173 1.48175 1.17545 1.24624 1.44156 1.19686 0.86849 0.79799 0.80249 1.90661 1.22362 1.65679 1.64888 1.23191 1.01681 0.99384 1.00939 1.84698 1.24206 1.30733 1.55073 1.22441 1.01257 1.14821 1.29182 0.91960 1.25533 1.00293 0.96650 0.93282 1.70011 1.34570 1.23817 1.26998 0.85885 0.80805 0.80564 0.79224 1.18629 1.18124 1.16254 1.21281 0.91836 0.91945 0.92575 0.90961 1.21731 0.94739 0.97741 0.91631 0.95561 0.92406 0.89192 0.88735 0.95414 0.90189 0.87788 0.88664 0.87210 0.89914 0.90211 0.87285 0.87330 0.91291 0.91729 0.96317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.66 127.69 1.23 1.82 16 2 N -0.56 -12.01 4.81 -924.00 -4.44 -16.45 16 3 C 0.05 0.79 5.41 86.67 0.47 1.26 16 4 C -0.10 -1.12 5.76 30.51 0.18 -0.94 16 5 C -0.10 -1.57 2.69 -10.20 -0.03 -1.60 16 6 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.26 6.57 31.61 0.21 -1.05 16 8 C 0.09 1.65 6.63 86.86 0.58 2.23 16 9 N -0.61 -17.05 3.28 -790.96 -2.60 -19.65 16 10 C 0.55 20.56 7.81 87.66 0.68 21.24 16 11 O -0.56 -25.14 14.09 -3.04 -0.04 -25.18 16 12 C -0.10 -4.04 5.41 71.24 0.39 -3.66 16 13 S -0.17 -9.03 18.55 -56.49 -1.05 -10.08 16 14 C -0.53 -31.29 10.04 67.95 0.68 -30.61 16 15 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 16 C 0.05 2.84 5.50 84.86 0.47 3.31 16 17 N -0.92 -56.15 13.97 21.65 0.30 -55.84 16 18 Si 0.91 45.55 27.74 68.60 1.90 47.45 16 19 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 22 C 0.13 3.12 2.55 45.33 0.12 3.23 16 23 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 24 C 0.07 1.93 4.60 85.50 0.39 2.32 16 25 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 1.22 8.01 -2.39 -0.02 1.20 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.93 8.01 -2.39 -0.02 0.91 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.89 8.13 -2.38 -0.02 0.87 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 37 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 38 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.06 2.26 6.56 -2.39 -0.02 2.24 16 40 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -74.00 328.69 0.40 -73.60 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.96 Total: 8.60 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.36 Total: -2.45 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -6.74 Total: -91.94 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -74.00 0.40 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334398644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.165 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds