Wall clock time and date at job start Tue Mar 31 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81390 * 103.00333 * 2 1 4 4 H 1.09004 * 110.66023 * 51.81056 * 3 2 1 5 5 C 1.54594 * 110.83576 * 288.56442 * 3 2 1 6 6 N 1.48116 * 103.42317 * 204.44657 * 5 3 2 7 7 C 1.34786 * 127.03180 * 219.28135 * 6 5 3 8 8 O 1.21686 * 119.99696 * 179.68329 * 7 6 5 9 9 C 1.46373 * 119.99966 * 359.68732 * 7 6 5 10 10 H 1.08002 * 119.99785 * 6.23569 * 9 7 6 11 11 C 1.40042 * 119.99893 * 186.24264 * 9 7 6 12 12 N 1.30672 * 120.00214 * 184.64607 * 11 9 7 13 13 Si 1.86801 * 120.00050 * 4.64194 * 11 9 7 14 14 H 1.48506 * 109.47193 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47418 * 300.00150 * 13 11 9 16 16 H 1.48502 * 109.47174 * 60.00413 * 13 11 9 17 17 C 1.47485 * 105.93409 * 39.02188 * 6 5 3 18 18 C 1.54001 * 107.08419 * 334.78160 * 17 6 5 19 19 H 1.08989 * 110.33172 * 120.19695 * 18 17 6 20 20 N 1.46907 * 110.32292 * 242.41475 * 18 17 6 21 21 C 1.48534 * 110.99533 * 176.14685 * 20 18 17 22 22 C 1.54942 * 103.22191 * 159.71920 * 21 20 18 23 23 C 1.54589 * 102.92456 * 322.58554 * 22 21 20 24 24 C 1.47894 * 110.99799 * 293.54339 * 20 18 17 25 25 H 1.09006 * 109.47065 * 299.99816 * 1 2 3 26 26 H 1.09003 * 109.47140 * 59.99687 * 1 2 3 27 27 H 1.09003 * 109.47640 * 180.02562 * 1 2 3 28 28 H 1.08993 * 110.61867 * 85.92950 * 5 3 2 29 29 H 1.09005 * 110.54790 * 322.92337 * 5 3 2 30 30 H 0.97000 * 119.99756 * 354.88715 * 12 11 9 31 31 H 1.09006 * 109.91080 * 94.14006 * 17 6 5 32 32 H 1.08993 * 109.91088 * 215.41643 * 17 6 5 33 33 H 1.08993 * 110.66718 * 278.15306 * 21 20 18 34 34 H 1.09001 * 110.66707 * 41.28895 * 21 20 18 35 35 H 1.09002 * 110.71996 * 204.22284 * 22 21 20 36 36 H 1.09004 * 110.87344 * 81.02143 * 22 21 20 37 37 H 1.08998 * 110.30716 * 263.04541 * 23 22 21 38 38 H 1.08995 * 110.39008 * 140.91593 * 23 22 21 39 39 H 1.09004 * 109.92270 * 333.51134 * 24 20 18 40 40 H 1.08998 * 109.91665 * 94.60765 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6942 2.2840 0.8016 5 6 1.8976 2.4067 -1.3697 6 7 2.7967 3.5826 -1.4219 7 6 2.5066 4.8052 -1.9096 8 8 3.3462 5.6856 -1.8833 9 6 1.1817 5.0738 -2.4708 10 1 0.4050 4.3263 -2.4034 11 6 0.9212 6.3000 -3.0951 12 7 -0.2850 6.5761 -3.5151 13 14 2.2980 7.5409 -3.3274 14 1 1.7662 8.7486 -4.0087 15 1 2.8489 7.9230 -2.0024 16 1 3.3732 6.9381 -4.1555 17 6 4.0721 3.1439 -0.8252 18 6 3.7489 1.9768 0.1260 19 1 4.2812 1.0775 -0.1835 20 7 4.1031 2.3310 1.5070 21 6 3.7126 1.2520 2.4501 22 6 4.5958 1.5302 3.6924 23 6 5.9313 1.9973 3.0695 24 6 5.5664 2.4864 1.6556 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.8540 2.7183 -1.4102 29 1 2.1246 1.7128 -2.1791 30 1 -0.9827 5.9043 -3.4620 31 1 4.7519 2.8074 -1.6081 32 1 4.5222 3.9645 -0.2666 33 1 2.6555 1.3276 2.7048 34 1 3.9388 0.2724 2.0289 35 1 4.7392 0.6203 4.2752 36 1 4.1616 2.3171 4.3092 37 1 6.6335 1.1656 3.0126 38 1 6.3580 2.8127 3.6535 39 1 6.0817 1.8820 0.9091 40 1 5.8422 3.5344 1.5393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334663745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:05 Heat of formation + Delta-G solvation = -58.587765 kcal Electronic energy + Delta-G solvation = -21126.060850 eV Core-core repulsion = 18065.461382 eV Total energy + Delta-G solvation = -3060.599468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03030 -39.54709 -37.67539 -35.14686 -33.37945 -31.32347 -29.98354 -29.76715 -29.17786 -27.62411 -24.72392 -23.04061 -21.84562 -21.48887 -20.80784 -19.57908 -18.10474 -17.95721 -16.83447 -16.74425 -16.57657 -16.07406 -15.55279 -15.00399 -14.96472 -14.89212 -14.49028 -14.32621 -14.21848 -14.07444 -13.79793 -13.47812 -13.33588 -13.27060 -12.60203 -12.45929 -12.37093 -12.33088 -12.18574 -12.01476 -11.93786 -11.41492 -11.32016 -11.22088 -11.04526 -10.15538 -9.56061 -9.45112 -9.25401 -8.72674 -7.17630 0.56074 1.38963 1.46674 1.51993 1.91908 2.14972 2.30822 2.56282 2.92673 3.20164 3.22334 3.44624 3.71630 3.91845 3.94899 4.04983 4.13050 4.28286 4.31368 4.34021 4.38219 4.48516 4.56613 4.60765 4.68307 4.76957 4.80874 4.88330 4.93381 4.99147 5.06228 5.12504 5.20788 5.31308 5.47427 5.63455 5.90823 5.98600 5.99539 6.58779 7.00364 7.87042 8.07728 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.005687 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.315132 B = 4922.445621 C = 6164.992871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.240 6.240 3 C -0.056 4.056 4 H 0.093 0.907 5 C 0.125 3.875 6 N -0.638 5.638 7 C 0.567 3.433 8 O -0.640 6.640 9 C -0.606 4.606 10 H 0.070 0.930 11 C 0.033 3.967 12 N -0.844 5.844 13 Si 1.158 2.842 14 H -0.302 1.302 15 H -0.298 1.298 16 H -0.295 1.295 17 C 0.120 3.880 18 C 0.104 3.896 19 H 0.074 0.926 20 N -0.528 5.528 21 C 0.040 3.960 22 C -0.119 4.119 23 C -0.123 4.123 24 C 0.030 3.970 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.278 0.722 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -16.833 12.167 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.012 6.012 3 C -0.186 4.186 4 H 0.111 0.889 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.376 3.624 8 O -0.535 6.535 9 C -0.643 4.643 10 H 0.088 0.912 11 C -0.182 4.182 12 N -0.472 5.472 13 Si 0.989 3.011 14 H -0.233 1.233 15 H -0.226 1.226 16 H -0.223 1.223 17 C -0.005 4.005 18 C -0.007 4.007 19 H 0.092 0.908 20 N -0.254 5.254 21 C -0.087 4.087 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.097 4.097 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.073 -15.294 11.732 20.532 hybrid contribution -1.215 -1.147 0.092 1.674 sum 5.858 -16.441 11.824 21.082 Atomic orbital electron populations 1.23506 0.92119 1.07763 1.05568 1.86485 1.09832 1.07216 1.97703 1.24187 0.99299 0.95084 1.00037 0.88876 1.22638 0.95205 0.86765 0.95447 1.48353 1.14383 1.10464 1.63977 1.18133 0.88222 0.79217 0.76838 1.90133 1.52757 1.44796 1.65826 1.22154 0.96572 1.04715 1.40852 0.91208 1.27737 1.01258 0.99855 0.89370 1.70664 1.01975 1.36435 1.38082 0.82016 0.70381 0.72350 0.76344 1.23257 1.22616 1.22274 1.21866 0.87261 0.96394 0.95003 1.22343 0.92860 0.95783 0.89677 0.90809 1.64828 1.14584 1.42255 1.03704 1.23266 1.00338 0.92607 0.92494 1.22485 0.94623 1.02075 0.96513 1.22370 0.97967 1.01643 0.94129 1.22922 0.87106 1.01330 0.98359 0.89822 0.90527 0.85907 0.91259 0.90207 0.91087 0.91942 0.92014 0.90693 0.92634 0.88974 0.91351 0.89877 0.90463 0.93125 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 10.74 113.37 1.22 -0.98 16 2 S -0.24 -5.48 20.93 -56.49 -1.18 -6.66 16 3 C -0.06 -1.63 2.49 31.69 0.08 -1.55 16 4 H 0.09 2.95 7.84 -2.38 -0.02 2.93 16 5 C 0.13 4.49 6.34 86.61 0.55 5.04 16 6 N -0.64 -28.59 3.29 -815.16 -2.69 -31.27 16 7 C 0.57 31.47 7.64 86.36 0.66 32.13 16 8 O -0.64 -38.54 12.41 -4.30 -0.05 -38.59 16 9 C -0.61 -34.91 9.48 24.83 0.24 -34.67 16 10 H 0.07 3.93 6.62 -2.91 -0.02 3.91 16 11 C 0.03 1.91 5.52 85.30 0.47 2.38 16 12 N -0.84 -48.78 13.64 21.83 0.30 -48.49 16 13 Si 1.16 61.88 25.99 68.60 1.78 63.66 16 14 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 15 H -0.30 -16.71 6.78 99.48 0.67 -16.03 16 16 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 17 C 0.12 4.44 6.34 86.53 0.55 4.99 16 18 C 0.10 3.01 2.02 45.80 0.09 3.11 16 19 H 0.07 1.96 7.67 -2.39 -0.02 1.94 16 20 N -0.53 -14.20 5.00 -852.67 -4.26 -18.46 16 21 C 0.04 0.85 5.31 86.65 0.46 1.31 16 22 C -0.12 -2.02 7.06 31.80 0.22 -1.79 16 23 C -0.12 -2.09 6.93 31.47 0.22 -1.87 16 24 C 0.03 0.70 5.86 86.45 0.51 1.21 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.64 6.61 -2.39 -0.02 2.63 16 29 H 0.08 2.67 8.04 -2.38 -0.02 2.65 16 30 H 0.28 15.48 8.72 -92.71 -0.81 14.67 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.06 2.53 7.17 -2.39 -0.02 2.52 16 33 H 0.07 1.67 7.87 -2.39 -0.02 1.66 16 34 H 0.06 1.14 7.84 -2.39 -0.02 1.12 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.09 7.69 -2.39 -0.02 1.08 16 40 H 0.07 1.71 7.90 -2.39 -0.02 1.69 16 Total: -1.00 -67.88 327.10 0.10 -67.78 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 0.94 Total: 2.74 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 5.26 Total: 9.29 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -6.65 Total: -98.22 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.05 Total: -38.59 kcal Atomic # 14 Polarization: 61.88 SS G_CDS: 1.78 Total: 63.66 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.18 Total: -6.66 kcal Total: -67.88 0.10 -67.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334663745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.195 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds