Wall clock time and date at job start Tue Mar 31 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 115.55190 * 2 1 4 4 O 1.21282 * 119.99969 * 99.72543 * 3 2 1 5 5 N 1.34775 * 120.00053 * 279.73701 * 3 2 1 6 6 C 1.46965 * 120.59451 * 184.84711 * 5 3 2 7 7 C 1.53373 * 108.63329 * 235.24696 * 6 5 3 8 8 N 1.46969 * 108.63261 * 310.56777 * 7 6 5 9 9 C 1.34769 * 120.59616 * 235.20695 * 8 7 6 10 10 O 1.21690 * 119.99717 * 174.54290 * 9 8 7 11 11 C 1.46369 * 120.00313 * 354.53647 * 9 8 7 12 12 H 1.08001 * 120.00078 * 330.19445 * 11 9 8 13 13 C 1.40043 * 120.00226 * 150.18754 * 11 9 8 14 14 N 1.30677 * 120.00095 * 342.94794 * 13 11 9 15 15 Si 1.86805 * 120.00289 * 162.94673 * 13 11 9 16 16 H 1.48506 * 109.46840 * 60.00266 * 15 13 11 17 17 H 1.48499 * 109.47118 * 300.00496 * 15 13 11 18 18 H 1.48500 * 109.47398 * 180.02562 * 15 13 11 19 19 C 1.46972 * 118.80921 * 55.48319 * 8 7 6 20 20 C 1.46964 * 120.59454 * 4.85866 * 5 3 2 21 21 C 1.52998 * 117.52277 * 145.70358 * 2 1 3 22 22 C 1.53004 * 60.00398 * 107.48247 * 21 2 1 23 23 H 1.08997 * 117.49909 * 252.51689 * 22 21 2 24 24 F 1.39895 * 117.51941 * 107.48358 * 22 21 2 25 25 H 1.09003 * 109.47158 * 61.80966 * 1 2 3 26 26 H 1.09005 * 109.46723 * 181.80816 * 1 2 3 27 27 H 1.08997 * 109.47339 * 301.80687 * 1 2 3 28 28 H 1.09000 * 109.61467 * 115.49759 * 6 5 3 29 29 H 1.09008 * 109.74806 * 355.06819 * 6 5 3 30 30 H 1.08998 * 109.61068 * 190.83104 * 7 6 5 31 31 H 1.08997 * 109.75217 * 70.39595 * 7 6 5 32 32 H 0.96995 * 119.99812 * 1.36565 * 14 13 11 33 33 H 1.09004 * 109.60862 * 64.25992 * 19 8 7 34 34 H 1.08997 * 109.60743 * 184.77608 * 19 8 7 35 35 H 1.08998 * 109.61234 * 244.49866 * 20 5 3 36 36 H 1.08992 * 109.61018 * 4.84389 * 20 5 3 37 37 H 1.08994 * 117.50677 * 214.97372 * 21 2 1 38 38 H 1.09009 * 117.49566 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.6016 1.8302 1.0352 5 7 2.2925 2.0527 -1.1504 6 6 3.0171 3.3309 -1.1857 7 6 2.0850 4.4070 -1.7562 8 7 1.4852 3.8984 -2.9978 9 6 1.5971 4.5919 -4.1479 10 8 1.1836 4.1152 -5.1885 11 6 2.2157 5.9184 -4.1455 12 1 2.1485 6.5440 -3.2677 13 6 2.8949 6.3764 -5.2814 14 7 3.2685 5.5305 -6.2047 15 14 3.2666 8.1966 -5.4768 16 1 4.1123 8.6534 -4.3447 17 1 1.9950 8.9634 -5.4856 18 1 3.9877 8.4201 -6.7556 19 6 0.7558 2.6229 -2.9613 20 6 1.6927 1.5441 -2.3919 21 6 2.2370 -1.1209 0.7645 22 6 2.2365 -1.1207 -0.7655 23 1 1.6113 -1.8582 -1.2687 24 9 3.4361 -0.8047 -1.4122 25 1 -0.3634 0.4855 -0.9058 26 1 -0.3633 -1.0272 0.0324 27 1 -0.3634 0.5416 0.8733 28 1 3.8974 3.2350 -1.8212 29 1 3.3227 3.6090 -0.1770 30 1 2.6565 5.3103 -1.9695 31 1 1.2988 4.6329 -1.0359 32 1 3.0581 4.5881 -6.1128 33 1 -0.1227 2.7220 -2.3236 34 1 0.4493 2.3479 -3.9705 35 1 2.4787 1.3210 -3.1133 36 1 1.1238 0.6391 -2.1792 37 1 3.1721 -0.8751 1.2676 38 1 1.6120 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335105719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:53 Heat of formation + Delta-G solvation = -94.419217 kcal Electronic energy + Delta-G solvation = -23432.228366 eV Core-core repulsion = 19803.861954 eV Total energy + Delta-G solvation = -3628.366412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.84181 -40.31799 -38.35761 -36.73294 -36.05349 -33.19735 -32.58753 -31.03163 -28.90598 -27.64552 -25.64871 -23.99657 -23.10339 -22.64824 -21.42295 -19.85034 -18.52602 -17.57759 -16.89221 -16.57890 -15.98329 -15.29014 -15.05755 -15.00170 -14.86255 -14.32656 -14.29303 -13.85235 -13.81307 -13.39020 -13.23948 -12.91816 -12.76072 -12.57038 -12.21030 -12.15334 -11.90231 -11.43424 -11.17986 -10.94519 -10.83926 -10.79151 -10.54692 -10.29416 -10.24883 -10.06241 -9.61804 -8.80225 -8.74601 -7.87783 -7.52486 -6.82742 -4.73928 2.52699 2.86032 3.17510 3.24864 3.30679 3.48902 3.72020 4.06101 4.15738 4.26501 4.36269 4.39149 4.61800 4.66650 5.13304 5.21923 5.23327 5.32374 5.36228 5.38993 5.40342 5.52981 5.55641 5.73463 5.75298 5.82520 5.88109 6.01942 6.18923 6.25105 6.40578 6.65406 7.28618 7.47641 7.79309 7.93938 8.17289 8.30599 8.77665 9.28405 10.17826 10.51374 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.004431 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.627492 B = 6317.425001 C = 6493.310292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.168 4.168 3 C 0.551 3.449 4 O -0.543 6.543 5 N -0.593 5.593 6 C 0.097 3.903 7 C 0.113 3.887 8 N -0.637 5.637 9 C 0.566 3.434 10 O -0.616 6.616 11 C -0.620 4.620 12 H 0.072 0.928 13 C 0.053 3.947 14 N -0.816 5.816 15 Si 1.077 2.923 16 H -0.280 1.280 17 H -0.279 1.279 18 H -0.277 1.277 19 C 0.104 3.896 20 C 0.096 3.904 21 C -0.156 4.156 22 C 0.031 3.969 23 H 0.141 0.859 24 F -0.175 7.175 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.299 0.701 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -11.814 11.971 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.172 4.172 3 C 0.338 3.662 4 O -0.421 6.421 5 N -0.325 5.325 6 C -0.026 4.026 7 C -0.012 4.012 8 N -0.374 5.374 9 C 0.374 3.626 10 O -0.504 6.504 11 C -0.657 4.657 12 H 0.090 0.910 13 C -0.168 4.168 14 N -0.445 5.445 15 Si 0.902 3.098 16 H -0.206 1.206 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.021 4.021 20 C -0.028 4.028 21 C -0.193 4.193 22 C -0.005 4.005 23 H 0.158 0.842 24 F -0.155 7.155 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.510 -10.721 10.925 15.511 hybrid contribution -0.683 -1.209 1.106 1.775 sum -3.193 -11.930 12.030 17.241 Atomic orbital electron populations 1.21338 0.88777 1.03115 1.03587 1.22220 0.97479 0.90553 1.06906 1.19257 0.78684 0.84983 0.83295 1.90670 1.49887 1.69970 1.31530 1.47960 1.53725 1.22249 1.08573 1.22161 0.95127 0.82735 1.02604 1.21770 0.96012 0.97133 0.86325 1.48156 1.57836 1.21460 1.09910 1.18513 0.78018 0.85684 0.80355 1.90511 1.54725 1.73521 1.31627 1.21761 1.41205 0.99353 1.03339 0.91022 1.26621 0.92049 1.06853 0.91313 1.70237 1.32675 1.07450 1.34156 0.83482 0.77041 0.72380 0.76899 1.20608 1.20437 1.20171 1.21667 0.93251 0.85296 1.01915 1.22325 0.97587 0.97106 0.85736 1.23758 1.03428 0.98798 0.93347 1.22390 0.85444 1.00228 0.92434 0.84165 1.92864 1.46585 1.93727 1.82320 0.90938 0.90981 0.90861 0.90896 0.88716 0.87323 0.93408 0.88742 0.93374 0.88511 0.90798 0.89773 0.87051 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.47 37.15 0.35 -0.59 16 2 C -0.17 -1.88 1.30 -155.66 -0.20 -2.08 16 3 C 0.55 8.64 6.49 -10.99 -0.07 8.57 16 4 O -0.54 -10.14 16.42 5.56 0.09 -10.05 16 5 N -0.59 -9.61 2.95 -172.21 -0.51 -10.12 16 6 C 0.10 1.66 6.59 -3.60 -0.02 1.64 16 7 C 0.11 2.12 6.44 -3.59 -0.02 2.10 16 8 N -0.64 -14.02 2.94 -173.87 -0.51 -14.53 16 9 C 0.57 15.47 7.03 -12.99 -0.09 15.38 16 10 O -0.62 -18.79 14.51 5.20 0.08 -18.72 16 11 C -0.62 -16.98 8.15 -35.64 -0.29 -17.27 16 12 H 0.07 1.83 6.76 -52.49 -0.35 1.47 16 13 C 0.05 1.45 5.36 -17.37 -0.09 1.36 16 14 N -0.82 -24.30 13.40 55.55 0.74 -23.55 16 15 Si 1.08 23.21 29.97 -169.99 -5.09 18.11 16 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.10 1.89 6.63 -3.36 -0.02 1.87 16 20 C 0.10 1.48 5.76 -3.36 -0.02 1.46 16 21 C -0.16 -1.45 9.85 -26.73 -0.26 -1.71 16 22 C 0.03 0.31 6.41 -26.72 -0.17 0.14 16 23 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 24 F -0.17 -2.38 16.78 2.25 0.04 -2.35 16 25 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 26 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.57 7.00 -51.92 -0.36 1.21 16 30 H 0.11 2.14 5.79 -51.93 -0.30 1.84 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.30 9.36 6.52 -40.82 -0.27 9.09 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.92 6.99 -51.93 -0.36 1.55 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.02 4.43 -51.93 -0.23 0.79 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -35.00 315.41 -6.17 -41.16 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.84 Total: 4.43 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.92 Total: 10.85 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.27 Total: -48.20 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: 0.17 Total: -28.77 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.09 Total: 18.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.00 -6.17 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335105719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.255 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds