Wall clock time and date at job start Tue Mar 31 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 115.55190 * 2 1 4 4 O 1.21282 * 119.99969 * 99.72543 * 3 2 1 5 5 N 1.34775 * 120.00053 * 279.73701 * 3 2 1 6 6 C 1.46965 * 120.59451 * 184.84711 * 5 3 2 7 7 C 1.53373 * 108.63329 * 235.24696 * 6 5 3 8 8 N 1.46969 * 108.63261 * 310.56777 * 7 6 5 9 9 C 1.34769 * 120.59616 * 235.20695 * 8 7 6 10 10 O 1.21690 * 119.99717 * 174.54290 * 9 8 7 11 11 C 1.46369 * 120.00313 * 354.53647 * 9 8 7 12 12 H 1.08001 * 120.00078 * 330.19445 * 11 9 8 13 13 C 1.40043 * 120.00226 * 150.18754 * 11 9 8 14 14 N 1.30677 * 120.00095 * 342.94794 * 13 11 9 15 15 Si 1.86805 * 120.00289 * 162.94673 * 13 11 9 16 16 H 1.48506 * 109.46840 * 60.00266 * 15 13 11 17 17 H 1.48499 * 109.47118 * 300.00496 * 15 13 11 18 18 H 1.48500 * 109.47398 * 180.02562 * 15 13 11 19 19 C 1.46972 * 118.80921 * 55.48319 * 8 7 6 20 20 C 1.46964 * 120.59454 * 4.85866 * 5 3 2 21 21 C 1.52998 * 117.52277 * 145.70358 * 2 1 3 22 22 C 1.53004 * 60.00398 * 107.48247 * 21 2 1 23 23 H 1.08997 * 117.49909 * 252.51689 * 22 21 2 24 24 F 1.39895 * 117.51941 * 107.48358 * 22 21 2 25 25 H 1.09003 * 109.47158 * 61.80966 * 1 2 3 26 26 H 1.09005 * 109.46723 * 181.80816 * 1 2 3 27 27 H 1.08997 * 109.47339 * 301.80687 * 1 2 3 28 28 H 1.09000 * 109.61467 * 115.49759 * 6 5 3 29 29 H 1.09008 * 109.74806 * 355.06819 * 6 5 3 30 30 H 1.08998 * 109.61068 * 190.83104 * 7 6 5 31 31 H 1.08997 * 109.75217 * 70.39595 * 7 6 5 32 32 H 0.96995 * 119.99812 * 1.36565 * 14 13 11 33 33 H 1.09004 * 109.60862 * 64.25992 * 19 8 7 34 34 H 1.08997 * 109.60743 * 184.77608 * 19 8 7 35 35 H 1.08998 * 109.61234 * 244.49866 * 20 5 3 36 36 H 1.08992 * 109.61018 * 4.84389 * 20 5 3 37 37 H 1.08994 * 117.50677 * 214.97372 * 21 2 1 38 38 H 1.09009 * 117.49566 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.6016 1.8302 1.0352 5 7 2.2925 2.0527 -1.1504 6 6 3.0171 3.3309 -1.1857 7 6 2.0850 4.4070 -1.7562 8 7 1.4852 3.8984 -2.9978 9 6 1.5971 4.5919 -4.1479 10 8 1.1836 4.1152 -5.1885 11 6 2.2157 5.9184 -4.1455 12 1 2.1485 6.5440 -3.2677 13 6 2.8949 6.3764 -5.2814 14 7 3.2685 5.5305 -6.2047 15 14 3.2666 8.1966 -5.4768 16 1 4.1123 8.6534 -4.3447 17 1 1.9950 8.9634 -5.4856 18 1 3.9877 8.4201 -6.7556 19 6 0.7558 2.6229 -2.9613 20 6 1.6927 1.5441 -2.3919 21 6 2.2370 -1.1209 0.7645 22 6 2.2365 -1.1207 -0.7655 23 1 1.6113 -1.8582 -1.2687 24 9 3.4361 -0.8047 -1.4122 25 1 -0.3634 0.4855 -0.9058 26 1 -0.3633 -1.0272 0.0324 27 1 -0.3634 0.5416 0.8733 28 1 3.8974 3.2350 -1.8212 29 1 3.3227 3.6090 -0.1770 30 1 2.6565 5.3103 -1.9695 31 1 1.2988 4.6329 -1.0359 32 1 3.0581 4.5881 -6.1128 33 1 -0.1227 2.7220 -2.3236 34 1 0.4493 2.3479 -3.9705 35 1 2.4787 1.3210 -3.1133 36 1 1.1238 0.6391 -2.1792 37 1 3.1721 -0.8751 1.2676 38 1 1.6120 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335105719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:52 Heat of formation + Delta-G solvation = -118.648369 kcal Electronic energy + Delta-G solvation = -23433.279021 eV Core-core repulsion = 19803.861954 eV Total energy + Delta-G solvation = -3629.417067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.76392 -41.59509 -40.09165 -37.98919 -37.49375 -34.90421 -34.66110 -32.52151 -29.70725 -29.19749 -27.55187 -25.32261 -24.53501 -23.44254 -22.90350 -21.51365 -19.99987 -18.95606 -18.26031 -17.70504 -17.24459 -17.04359 -16.63799 -16.32149 -16.08683 -15.85619 -15.57654 -15.46403 -15.08169 -14.68277 -14.48061 -14.15547 -14.00839 -13.73185 -13.61537 -13.28356 -13.18551 -12.91901 -12.66636 -12.62548 -12.44593 -12.38475 -12.09190 -11.88691 -11.37709 -11.17448 -10.84706 -10.70421 -10.26314 -10.01038 -9.30113 -8.97527 -6.93241 1.33714 1.52010 1.57586 1.67399 1.83081 2.25271 2.32065 2.42295 2.63318 2.97151 3.20146 3.30575 3.42388 3.77535 3.80229 3.89231 3.98766 4.05370 4.12056 4.30484 4.38693 4.53919 4.58630 4.63897 4.71010 4.73100 4.78762 4.83624 4.89287 5.02821 5.20562 5.26091 5.44279 5.68203 5.99549 6.08865 6.23241 6.72718 6.91773 7.22880 8.07312 8.28594 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.004431 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.627492 B = 6317.425001 C = 6493.310292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.185 4.185 3 C 0.546 3.454 4 O -0.578 6.578 5 N -0.598 5.598 6 C 0.103 3.897 7 C 0.116 3.884 8 N -0.639 5.639 9 C 0.553 3.447 10 O -0.658 6.658 11 C -0.639 4.639 12 H 0.087 0.913 13 C 0.006 3.994 14 N -0.847 5.847 15 Si 1.131 2.869 16 H -0.250 1.250 17 H -0.265 1.265 18 H -0.278 1.278 19 C 0.101 3.899 20 C 0.111 3.889 21 C -0.144 4.144 22 C 0.030 3.970 23 H 0.185 0.815 24 F -0.202 7.202 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.275 0.725 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -12.760 13.687 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.335 3.665 4 O -0.458 6.458 5 N -0.329 5.329 6 C -0.021 4.021 7 C -0.008 4.008 8 N -0.374 5.374 9 C 0.360 3.640 10 O -0.549 6.549 11 C -0.676 4.676 12 H 0.105 0.895 13 C -0.208 4.208 14 N -0.476 5.476 15 Si 0.947 3.053 16 H -0.174 1.174 17 H -0.190 1.190 18 H -0.203 1.203 19 C -0.023 4.023 20 C -0.013 4.013 21 C -0.181 4.181 22 C -0.006 4.006 23 H 0.202 0.798 24 F -0.182 7.182 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.606 -11.711 12.706 17.652 hybrid contribution -0.378 -0.984 0.692 1.261 sum -3.984 -12.695 13.398 18.882 Atomic orbital electron populations 1.21395 0.86298 1.05505 1.03128 1.22300 0.99024 0.88104 1.09408 1.20109 0.77827 0.86399 0.82180 1.90646 1.51325 1.71237 1.32587 1.48036 1.53725 1.21958 1.09228 1.21951 0.94400 0.83275 1.02434 1.21835 0.96506 0.97263 0.85241 1.48036 1.57473 1.22329 1.09515 1.18741 0.77814 0.86249 0.81150 1.90470 1.56449 1.74384 1.33585 1.22160 1.41016 1.00143 1.04233 0.89464 1.28414 0.90960 1.10842 0.90554 1.70394 1.35093 1.06418 1.35659 0.82867 0.77912 0.66735 0.77782 1.17392 1.18981 1.20347 1.21867 0.94422 0.84306 1.01707 1.22207 0.96719 0.97425 0.84926 1.23903 1.02788 0.98283 0.93155 1.22993 0.84531 0.99867 0.93171 0.79803 1.92816 1.48490 1.93975 1.82928 0.91202 0.87160 0.91564 0.92299 0.87976 0.88429 0.91707 0.91306 0.90873 0.90399 0.92733 0.85722 0.89235 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.47 71.98 0.68 -0.69 16 2 C -0.18 -3.58 1.30 -52.93 -0.07 -3.65 16 3 C 0.55 16.39 6.49 87.66 0.57 16.96 16 4 O -0.58 -21.26 16.42 -3.04 -0.05 -21.31 16 5 N -0.60 -18.91 2.95 -817.14 -2.41 -21.32 16 6 C 0.10 3.56 6.59 86.42 0.57 4.13 16 7 C 0.12 4.35 6.44 86.41 0.56 4.91 16 8 N -0.64 -28.42 2.94 -822.21 -2.42 -30.83 16 9 C 0.55 31.07 7.03 86.36 0.61 31.67 16 10 O -0.66 -41.72 14.51 -4.32 -0.06 -41.79 16 11 C -0.64 -35.53 8.15 24.83 0.20 -35.33 16 12 H 0.09 4.44 6.76 -2.91 -0.02 4.42 16 13 C 0.01 0.32 5.36 85.30 0.46 0.78 16 14 N -0.85 -52.05 13.40 21.83 0.29 -51.76 16 15 Si 1.13 46.24 29.97 68.60 2.06 48.30 16 16 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 17 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 19 C 0.10 3.64 6.63 86.57 0.57 4.21 16 20 C 0.11 3.30 5.76 86.57 0.50 3.80 16 21 C -0.14 -2.19 9.85 30.60 0.30 -1.89 16 22 C 0.03 0.49 6.41 30.60 0.20 0.68 16 23 H 0.19 1.37 8.14 -2.39 -0.02 1.35 16 24 F -0.20 -5.20 16.78 44.97 0.75 -4.45 16 25 H 0.07 0.94 6.89 -2.39 -0.02 0.92 16 26 H 0.11 0.61 8.11 -2.38 -0.02 0.59 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 3.39 7.00 -2.38 -0.02 3.38 16 30 H 0.10 3.88 5.79 -2.39 -0.01 3.86 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.28 18.11 6.52 -92.71 -0.60 17.51 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.08 3.14 6.99 -2.39 -0.02 3.12 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.12 2.70 4.43 -2.39 -0.01 2.68 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.16 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -80.41 315.41 4.56 -75.86 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.25 Total: 21.71 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 5.14 Total: 25.58 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.53 Total: -103.91 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -0.11 Total: -63.09 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.75 Total: -4.45 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.06 Total: 48.30 kcal Total: -80.41 4.56 -75.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335105719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.793 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds