Wall clock time and date at job start Tue Mar 31 2020 02:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00516 * 2 1 4 4 C 1.50705 * 112.84617 * 303.96280 * 3 2 1 5 5 O 1.21278 * 120.00209 * 118.65115 * 4 3 2 6 6 N 1.34774 * 119.99756 * 298.65020 * 4 3 2 7 7 C 1.46963 * 120.59275 * 184.28006 * 6 4 3 8 8 C 1.53375 * 108.63483 * 235.19881 * 7 6 4 9 9 N 1.46966 * 108.63716 * 310.58187 * 8 7 6 10 10 C 1.36932 * 120.58788 * 235.20317 * 9 8 7 11 11 H 1.08000 * 119.99983 * 149.97037 * 10 9 8 12 12 C 1.38816 * 120.00379 * 329.95986 * 10 9 8 13 13 N 1.31621 * 119.99892 * 346.55182 * 12 10 9 14 14 Si 1.86801 * 120.00086 * 166.54241 * 12 10 9 15 15 H 1.48504 * 109.46995 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47260 * 300.00557 * 14 12 10 17 17 H 1.48496 * 109.46856 * 60.00876 * 14 12 10 18 18 C 1.46954 * 118.81334 * 55.47112 * 9 8 7 19 19 C 1.46965 * 120.59580 * 4.25352 * 6 4 3 20 20 C 1.53780 * 113.68995 * 75.22459 * 3 2 1 21 21 C 1.53784 * 87.07759 * 139.99579 * 20 3 2 22 22 C 1.53775 * 113.61728 * 172.76311 * 3 2 1 23 23 H 1.09005 * 109.46898 * 305.19440 * 1 2 3 24 24 H 1.09005 * 109.46635 * 65.18469 * 1 2 3 25 25 H 1.08996 * 109.47550 * 185.19046 * 1 2 3 26 26 H 1.09004 * 109.60826 * 115.46198 * 7 6 4 27 27 H 1.08993 * 109.61184 * 354.94861 * 7 6 4 28 28 H 1.08994 * 109.61064 * 190.82535 * 8 7 6 29 29 H 1.09005 * 109.60600 * 70.32362 * 8 7 6 30 30 H 0.97001 * 120.00061 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.61039 * 64.27081 * 18 9 8 32 32 H 1.09004 * 109.61219 * 184.77880 * 18 9 8 33 33 H 1.08997 * 109.61495 * 244.54099 * 19 6 4 34 34 H 1.09004 * 109.61260 * 5.05673 * 19 6 4 35 35 H 1.08996 * 113.61403 * 254.54394 * 20 3 2 36 36 H 1.08995 * 113.61615 * 25.44804 * 20 3 2 37 37 H 1.09003 * 113.61435 * 220.01940 * 21 20 3 38 38 H 1.09003 * 113.61352 * 89.12077 * 21 20 3 39 39 H 1.09000 * 113.61481 * 334.48438 * 22 3 2 40 40 H 1.09001 * 113.61318 * 105.38710 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 1.5979 2.5122 -1.1519 5 8 0.8127 3.4115 -0.9383 6 7 1.9122 2.1788 -2.4194 7 6 1.3846 2.9557 -3.5498 8 6 0.6565 2.0004 -4.5036 9 7 1.5333 0.8538 -4.7799 10 6 1.8526 0.5152 -6.0676 11 1 2.8018 0.0473 -6.2834 12 6 0.9563 0.7729 -7.0958 13 7 -0.2901 1.0918 -6.8178 14 14 1.5190 0.6675 -8.8739 15 1 0.3809 0.9860 -9.7730 16 1 2.6180 1.6395 -9.1038 17 1 2.0056 -0.7063 -9.1584 18 6 2.0563 0.0736 -3.6497 19 6 2.7891 1.0323 -2.6957 20 6 2.0113 2.4503 1.3616 21 6 3.3121 3.2232 1.0870 22 6 3.7227 2.0532 0.1775 23 1 -0.3633 0.5923 0.8399 24 1 -0.3633 0.4313 -0.9328 25 1 -0.3634 -1.0234 0.0930 26 1 2.2070 3.4410 -4.0756 27 1 0.6870 3.7083 -3.1827 28 1 0.4266 2.5180 -5.4348 29 1 -0.2658 1.6520 -4.0386 30 1 -0.9163 1.2723 -7.5362 31 1 1.2314 -0.4089 -3.1253 32 1 2.7513 -0.6816 -4.0168 33 1 3.7113 1.3806 -3.1607 34 1 3.0189 0.5145 -1.7644 35 1 1.1260 3.0850 1.3994 36 1 2.0799 1.7670 2.2081 37 1 3.9467 3.3365 1.9660 38 1 3.1586 4.1599 0.5510 39 1 4.2592 1.2613 0.7002 40 1 4.2190 2.3673 -0.7408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336106405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:35 Heat of formation + Delta-G solvation = 5.558466 kcal Electronic energy + Delta-G solvation = -21751.522219 eV Core-core repulsion = 18693.704341 eV Total energy + Delta-G solvation = -3057.817878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76367 -39.14441 -37.96520 -35.69598 -33.07872 -32.14208 -30.01705 -29.00687 -27.50414 -26.69933 -25.45211 -24.38085 -22.86389 -21.18000 -19.76625 -19.04125 -18.11156 -17.34601 -17.08871 -16.71158 -16.24722 -15.78390 -15.49807 -15.38210 -15.27170 -15.05858 -14.57558 -14.38046 -14.27707 -13.88795 -13.48464 -13.45420 -13.27135 -12.99819 -12.64095 -12.51680 -12.38019 -12.12899 -12.02117 -11.91654 -11.84927 -11.68263 -11.48045 -11.24480 -10.71083 -10.60484 -9.87701 -8.72341 -8.52062 -7.87941 -5.40635 0.43212 1.16718 1.48425 1.50529 1.57160 1.79457 1.90683 2.50475 3.19790 3.27172 3.33527 3.43778 3.60774 3.75276 4.13785 4.19647 4.22366 4.25485 4.31290 4.39118 4.57836 4.60443 4.69912 4.72764 4.76048 4.76565 4.88947 4.92294 4.97333 5.02451 5.05502 5.25119 5.35337 5.42076 5.59214 5.64778 6.35834 6.40855 7.01238 7.09454 7.77706 8.32410 9.16549 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.005033 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.604841 B = 5562.298246 C = 5721.088879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.206 6.206 3 C -0.096 4.096 4 C 0.528 3.472 5 O -0.580 6.580 6 N -0.588 5.588 7 C 0.099 3.901 8 C 0.174 3.826 9 N -0.607 5.607 10 C -0.264 4.264 11 H 0.074 0.926 12 C -0.049 4.049 13 N -0.939 5.939 14 Si 0.972 3.028 15 H -0.297 1.297 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.135 3.865 19 C 0.093 3.907 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.093 4.093 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H -0.012 1.012 30 H 0.250 0.750 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.673 -0.056 16.681 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.025 5.975 3 C -0.209 4.209 4 C 0.314 3.686 5 O -0.462 6.462 6 N -0.319 5.319 7 C -0.025 4.025 8 C 0.047 3.953 9 N -0.331 5.331 10 C -0.393 4.393 11 H 0.092 0.908 12 C -0.244 4.244 13 N -0.585 5.585 14 Si 0.799 3.201 15 H -0.224 1.224 16 H -0.202 1.202 17 H -0.199 1.199 18 C 0.009 3.991 19 C -0.032 4.032 20 C -0.145 4.145 21 C -0.166 4.166 22 C -0.132 4.132 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.139 0.861 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.006 0.994 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.806 -0.522 16.649 18.842 hybrid contribution -1.515 0.983 -1.572 2.394 sum 7.291 0.460 15.077 16.754 Atomic orbital electron populations 1.23421 0.94250 1.07412 1.04223 1.86388 1.07824 1.06495 1.96818 1.24565 1.04006 0.94525 0.97798 1.20301 0.81230 0.83062 0.83962 1.90626 1.36989 1.33654 1.84889 1.47980 1.48256 1.30766 1.04849 1.22192 0.98645 0.94546 0.87107 1.20843 0.89904 0.88098 0.96468 1.44229 1.56832 1.30006 1.02023 1.19539 0.98990 1.36909 0.83910 0.90792 1.25916 0.94635 1.01369 1.02477 1.70145 1.03610 1.52569 1.32167 0.85281 0.76804 0.78389 0.79582 1.22360 1.20163 1.19904 1.21436 0.96259 0.93114 0.88274 1.22805 0.92225 0.86490 1.01668 1.23143 0.99634 0.98888 0.92809 1.22777 0.96782 0.96308 1.00716 1.22939 0.88925 0.99823 1.01508 0.89265 0.93535 0.86133 0.91291 0.90814 0.90957 0.99388 0.94046 0.96732 0.90608 0.91188 0.86313 0.91725 0.85942 0.87246 0.91554 0.85591 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 10.40 113.37 1.18 -2.00 16 2 S -0.21 -5.04 19.00 -56.49 -1.07 -6.11 16 3 C -0.10 -2.43 0.54 -11.01 -0.01 -2.44 16 4 C 0.53 18.29 5.99 87.66 0.53 18.82 16 5 O -0.58 -23.86 15.31 -3.02 -0.05 -23.91 16 6 N -0.59 -21.52 2.95 -817.14 -2.41 -23.92 16 7 C 0.10 4.14 6.60 86.42 0.57 4.71 16 8 C 0.17 8.69 5.48 86.42 0.47 9.16 16 9 N -0.61 -30.23 2.96 -697.35 -2.06 -32.29 16 10 C -0.26 -14.11 9.58 84.04 0.81 -13.31 16 11 H 0.07 3.77 7.86 -2.91 -0.02 3.75 16 12 C -0.05 -2.68 4.99 84.86 0.42 -2.25 16 13 N -0.94 -55.49 11.08 21.65 0.24 -55.25 16 14 Si 0.97 44.07 29.57 68.60 2.03 46.09 16 15 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 C 0.14 5.47 6.70 86.57 0.58 6.05 16 19 C 0.09 3.04 5.46 86.57 0.47 3.51 16 20 C -0.11 -2.21 7.11 31.12 0.22 -1.98 16 21 C -0.13 -2.28 7.80 31.12 0.24 -2.04 16 22 C -0.09 -1.76 6.40 31.12 0.20 -1.56 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 25 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 27 H 0.07 3.13 6.99 -2.39 -0.02 3.11 16 28 H 0.07 4.02 6.00 -2.39 -0.01 4.01 16 29 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.12 3.31 3.79 -12.35 -0.05 3.26 16 35 H 0.06 1.65 7.34 -2.39 -0.02 1.63 16 36 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.78 8.10 -2.39 -0.02 1.76 16 40 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -66.54 324.52 3.35 -63.19 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.98 Total: 15.52 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.69 Total: 16.67 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -4.23 Total: -111.46 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.07 Total: -6.11 kcal Total: -66.54 3.35 -63.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.749 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds