Wall clock time and date at job start Tue Mar 31 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47134 * 299.99900 * 3 2 1 6 6 H 1.48496 * 109.47274 * 60.00100 * 3 2 1 7 7 C 1.37875 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47200 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00041 * 179.97438 * 12 11 10 14 14 O 1.21343 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.49444 * 120.00115 * 180.02562 * 13 12 11 16 16 O 1.21357 * 120.00084 * 6.74027 * 15 13 12 17 17 N 1.34773 * 120.00287 * 186.74788 * 15 13 12 18 18 C 1.46928 * 120.62677 * 8.41773 * 17 15 13 19 19 C 1.53625 * 108.54075 * 126.37464 * 18 17 15 20 20 C 1.53036 * 109.24558 * 54.85587 * 19 18 17 21 21 C 1.53043 * 109.53715 * 298.51524 * 20 19 18 22 22 H 1.09006 * 109.51767 * 301.39077 * 21 20 19 23 23 O 1.42896 * 109.49625 * 181.31664 * 21 20 19 24 24 C 1.46924 * 120.63339 * 188.70597 * 17 15 13 25 25 H 0.96994 * 119.99763 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47110 * 59.99595 * 9 7 2 27 27 H 1.09003 * 109.46661 * 299.99683 * 9 7 2 28 28 H 1.09000 * 109.47273 * 300.00124 * 10 9 7 29 29 H 1.08998 * 109.46772 * 59.99362 * 10 9 7 30 30 H 1.09003 * 109.46631 * 299.99907 * 11 10 9 31 31 H 1.08996 * 109.46944 * 59.99748 * 11 10 9 32 32 H 0.97003 * 120.00077 * 359.97438 * 12 11 10 33 33 H 1.09008 * 109.58757 * 246.20662 * 18 17 15 34 34 H 1.08994 * 109.58754 * 6.62959 * 18 17 15 35 35 H 1.09001 * 109.63481 * 294.86132 * 19 18 17 36 36 H 1.09007 * 109.45620 * 174.74155 * 19 18 17 37 37 H 1.08991 * 109.46382 * 178.48727 * 20 19 18 38 38 H 1.09002 * 109.45882 * 58.52615 * 20 19 18 39 39 H 0.96701 * 114.00029 * 180.15459 * 23 21 20 40 40 H 1.09004 * 109.58622 * 353.36391 * 24 17 15 41 41 H 1.08994 * 109.59109 * 113.79204 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3714 0.0006 14 8 0.7901 -7.5930 0.0007 15 6 2.9542 -8.5072 0.0018 16 8 4.1417 -8.2902 0.1261 17 7 2.5113 -9.7727 -0.1352 18 6 1.1061 -10.0419 -0.4697 19 6 1.0640 -10.9497 -1.7083 20 6 1.8979 -12.2050 -1.4422 21 6 3.3535 -11.8077 -1.1858 22 1 3.7409 -11.2670 -2.0494 23 8 4.1372 -12.9825 -0.9678 24 6 3.4228 -10.9095 0.0532 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 2.8720 -3.6044 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 0.8534 -5.0451 0.8897 31 1 0.8539 -5.0446 -0.8903 32 1 3.3860 -5.9234 0.0008 33 1 0.6199 -10.5404 0.3689 34 1 0.5956 -9.1033 -0.6853 35 1 1.4725 -10.4168 -2.5670 36 1 0.0324 -11.2351 -1.9144 37 1 1.8486 -12.8642 -2.3088 38 1 1.5040 -12.7241 -0.5684 39 1 5.0722 -12.8053 -0.7961 40 1 4.4414 -10.5435 0.1827 41 1 3.1217 -11.4773 0.9335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339296824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:47 Heat of formation + Delta-G solvation = -148.412514 kcal Electronic energy + Delta-G solvation = -22162.998065 eV Core-core repulsion = 18655.750633 eV Total energy + Delta-G solvation = -3507.247432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11975 -40.14418 -39.03186 -37.42506 -36.68584 -35.24115 -33.57886 -33.04474 -31.12704 -29.05417 -27.36422 -25.52928 -24.27375 -23.69574 -22.38916 -21.77016 -20.68268 -18.92924 -18.50855 -18.24585 -18.04837 -17.32740 -16.90382 -16.51889 -16.43641 -16.10393 -15.83513 -15.42425 -15.05486 -14.97563 -14.36618 -14.26124 -14.01997 -13.76942 -13.62048 -13.51037 -13.07390 -12.89759 -12.78642 -12.55518 -12.37640 -12.07913 -11.94320 -11.69534 -11.61349 -11.51183 -11.26824 -11.19842 -10.55304 -10.44509 -10.21459 -9.86526 -8.19702 -6.30257 0.22099 1.15147 1.41606 1.42446 1.55115 1.99551 2.34196 2.43294 3.14474 3.16584 3.24110 3.69071 3.77635 3.94908 4.04976 4.08212 4.18913 4.20656 4.40681 4.52970 4.57005 4.67520 4.72323 4.83884 4.92172 4.95732 4.99171 5.09385 5.15093 5.17458 5.29448 5.39295 5.52463 5.71378 5.84882 5.85318 6.12514 6.24017 6.57980 6.76235 6.84314 6.87095 7.39196 8.92386 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044718 B = 0.002536 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.989757 B =11037.701199 C =11448.645511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.684 5.684 13 C 0.503 3.497 14 O -0.530 6.530 15 C 0.511 3.489 16 O -0.542 6.542 17 N -0.574 5.574 18 C 0.062 3.938 19 C -0.125 4.125 20 C -0.114 4.114 21 C 0.099 3.901 22 H 0.057 0.943 23 O -0.572 6.572 24 C 0.077 3.923 25 H 0.263 0.737 26 H -0.002 1.002 27 H -0.003 1.003 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.419 0.581 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.092 0.908 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -25.570 -2.264 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.005 3.995 12 N -0.335 5.335 13 C 0.285 3.715 14 O -0.409 6.409 15 C 0.294 3.706 16 O -0.420 6.420 17 N -0.308 5.308 18 C -0.058 4.058 19 C -0.164 4.164 20 C -0.152 4.152 21 C 0.040 3.960 22 H 0.075 0.925 23 O -0.379 6.379 24 C -0.045 4.045 25 H 0.072 0.928 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.256 0.744 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.247 0.753 40 H 0.111 0.889 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.090 -25.802 -2.294 26.399 hybrid contribution 1.032 1.432 0.214 1.779 sum 6.122 -24.370 -2.080 25.213 Atomic orbital electron populations 1.70099 1.07769 1.27714 1.51755 1.25968 0.95751 1.03365 0.94851 0.85407 0.79141 0.78888 0.77656 1.18497 1.20520 1.20579 1.21708 0.93684 0.92164 1.50323 0.91855 1.18936 0.94340 0.92521 0.95487 1.21641 0.98646 0.91989 1.02169 1.21503 0.91511 0.84305 1.02227 1.45927 1.12317 1.04610 1.70692 1.20211 0.88513 0.84643 0.78169 1.90504 1.17071 1.83437 1.49887 1.20034 0.87869 0.84535 0.78168 1.90742 1.16892 1.84471 1.49927 1.47961 1.12636 1.04028 1.66224 1.23106 0.79691 1.04571 0.98447 1.21975 1.02129 0.95130 0.97119 1.21539 0.92110 0.98084 1.03451 1.22029 0.93289 0.85593 0.95137 0.92500 1.86503 1.25684 1.31524 1.94225 1.22597 0.95391 0.86631 0.99926 0.92788 0.98400 0.98503 0.91468 0.91603 0.91598 0.91305 0.74416 0.89945 0.85410 0.91734 0.87778 0.90265 0.90570 0.75293 0.88927 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -3.99 5.27 30.59 0.16 -3.82 16 11 C 0.13 4.15 5.67 86.38 0.49 4.64 16 12 N -0.68 -19.13 5.55 -464.43 -2.58 -21.71 16 13 C 0.50 14.05 7.74 87.27 0.68 14.72 16 14 O -0.53 -16.16 13.18 -3.23 -0.04 -16.20 16 15 C 0.51 12.99 7.73 87.27 0.67 13.66 16 16 O -0.54 -15.53 15.93 -3.27 -0.05 -15.58 16 17 N -0.57 -11.58 2.97 -819.65 -2.43 -14.01 16 18 C 0.06 1.10 6.01 86.51 0.52 1.62 16 19 C -0.13 -1.64 6.10 30.82 0.19 -1.45 16 20 C -0.11 -1.45 5.53 30.62 0.17 -1.28 16 21 C 0.10 1.38 3.62 30.67 0.11 1.49 16 22 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 23 O -0.57 -7.53 13.32 -148.98 -1.98 -9.52 16 24 C 0.08 1.22 6.07 86.36 0.52 1.74 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.42 10.61 7.96 -92.71 -0.74 9.87 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.13 2.83 4.30 -48.39 -0.21 2.63 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.40 2.22 9.08 -74.06 -0.67 1.54 16 40 H 0.09 1.56 7.01 -2.38 -0.02 1.54 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.56 338.63 -0.98 -68.54 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.56 Total: 15.11 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.36 Total: 3.52 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -4.72 Total: -91.44 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.08 Total: -41.30 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.56 -0.98 -68.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339296824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.873 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds