Wall clock time and date at job start Tue Mar 31 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99880 * 2 1 4 4 H 1.48496 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46863 * 299.99853 * 3 2 1 6 6 H 1.48501 * 109.47070 * 59.99593 * 3 2 1 7 7 C 1.37882 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46575 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99606 * 179.97438 * 12 11 10 14 14 O 1.21353 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.49450 * 119.99981 * 180.02562 * 13 12 11 16 16 O 1.21345 * 119.99730 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99981 * 180.02562 * 15 13 12 18 18 C 1.46499 * 119.99872 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46840 * 180.02562 * 18 17 15 20 20 H 1.09000 * 110.33102 * 305.69231 * 19 18 17 21 21 C 1.54481 * 110.36929 * 183.44966 * 19 18 17 22 22 C 1.54512 * 104.06261 * 217.18822 * 21 19 18 23 23 C 1.54483 * 104.06221 * 359.97438 * 22 21 19 24 24 O 1.44415 * 110.37515 * 67.94915 * 19 18 17 25 25 H 0.97000 * 119.99896 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47420 * 59.99597 * 9 7 2 27 27 H 1.09001 * 109.46742 * 299.99693 * 9 7 2 28 28 H 1.08992 * 109.47056 * 59.99280 * 10 9 7 29 29 H 1.09001 * 109.46652 * 299.99643 * 10 9 7 30 30 H 1.09002 * 109.47131 * 59.99984 * 11 10 9 31 31 H 1.09001 * 109.46741 * 299.99606 * 11 10 9 32 32 H 0.96991 * 120.00647 * 359.97438 * 12 11 10 33 33 H 0.97000 * 119.99708 * 359.97438 * 17 15 13 34 34 H 1.09002 * 109.47391 * 59.99686 * 18 17 15 35 35 H 1.09001 * 109.46813 * 299.99742 * 18 17 15 36 36 H 1.08998 * 110.51338 * 335.83345 * 21 19 18 37 37 H 1.09004 * 110.51243 * 98.40944 * 21 19 18 38 38 H 1.08993 * 110.50994 * 118.64509 * 22 21 19 39 39 H 1.08999 * 110.50967 * 241.36040 * 22 21 19 40 40 H 1.08997 * 110.36846 * 142.80601 * 23 22 21 41 41 H 1.08996 * 110.37236 * 265.04020 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4326 -6.1005 0.0031 13 6 1.9834 -7.3712 0.0042 14 8 0.7903 -7.5930 0.0052 15 6 2.9546 -8.5071 0.0054 16 8 4.1476 -8.2853 0.0049 17 7 2.5054 -9.7779 0.0061 18 6 3.4574 -10.8913 0.0078 19 6 2.6924 -12.2164 0.0076 20 1 1.9856 -12.2457 0.8368 21 6 3.6754 -13.4048 0.0966 22 6 3.0437 -14.4833 -0.8118 23 6 1.7534 -13.8192 -1.3416 24 8 2.0024 -12.3983 -1.2479 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8714 -3.6038 0.8921 29 1 2.8727 -3.6046 -0.8878 30 1 0.8542 -5.0455 -0.8878 31 1 0.8535 -5.0441 0.8923 32 1 3.3862 -5.9233 0.0027 33 1 1.5517 -9.9551 0.0061 34 1 4.0834 -10.8328 0.8983 35 1 4.0848 -10.8342 -0.8817 36 1 4.6575 -13.1170 -0.2785 37 1 3.7497 -13.7630 1.1234 38 1 3.7135 -14.7287 -1.6359 39 1 2.8038 -15.3761 -0.2344 40 1 1.5772 -14.1061 -2.3782 41 1 0.9013 -14.0972 -0.7214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339455217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:02 Heat of formation + Delta-G solvation = -136.717286 kcal Electronic energy + Delta-G solvation = -21365.320173 eV Core-core repulsion = 17858.579883 eV Total energy + Delta-G solvation = -3506.740289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66858 -39.84573 -38.41492 -35.82587 -35.00168 -33.30361 -32.64348 -31.22708 -30.75214 -27.38871 -26.26117 -24.19703 -22.72874 -22.06544 -21.69410 -20.74681 -20.02150 -18.42201 -17.23940 -16.72118 -16.37002 -16.26946 -16.17277 -15.77656 -15.34968 -14.80334 -14.75255 -14.42650 -14.21457 -13.72849 -13.70177 -12.89981 -12.76011 -12.31348 -12.30189 -11.94595 -11.85959 -11.78432 -11.74753 -11.62140 -11.17593 -10.92189 -10.74609 -10.57179 -10.29042 -9.89027 -9.76802 -9.47960 -9.35847 -9.10704 -8.94937 -8.37427 -6.01930 -4.04780 1.45431 2.34744 3.24872 3.30870 3.31227 3.38418 3.42434 3.69882 3.99757 4.19066 4.36799 4.44675 4.53859 4.55108 4.63815 4.84500 4.98612 5.12866 5.24230 5.29725 5.34109 5.35547 5.47958 5.51401 5.61806 5.71500 5.97179 6.10294 6.30106 6.30380 6.56091 6.71433 6.94117 6.96874 7.43414 7.63217 7.74753 7.74926 7.96731 8.08598 8.38026 9.02031 9.59566 11.09370 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.058405 B = 0.002120 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.297530 B =13205.927259 C =13528.889356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.525 6.525 15 C 0.509 3.491 16 O -0.523 6.523 17 N -0.700 5.700 18 C 0.125 3.875 19 C 0.060 3.940 20 H 0.080 0.920 21 C -0.147 4.147 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.366 6.366 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -30.114 0.363 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.290 3.710 16 O -0.398 6.398 17 N -0.354 5.354 18 C 0.001 3.999 19 C 0.002 3.998 20 H 0.097 0.903 21 C -0.185 4.185 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.285 6.285 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.253 0.747 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.012 -29.807 0.206 30.408 hybrid contribution 0.447 0.716 0.128 0.854 sum 6.459 -29.091 0.334 29.801 Atomic orbital electron populations 1.69973 1.06054 1.26589 1.50680 1.25035 0.94871 0.99344 0.95271 0.86516 0.80083 0.83697 0.77578 1.19729 1.21012 1.21007 1.21245 0.93101 0.90876 1.50782 0.92502 1.19041 0.93819 0.90807 0.97732 1.21926 0.99872 0.92957 1.01316 1.21845 0.91743 0.84714 1.02539 1.46062 1.12207 1.04973 1.71088 1.19982 0.88444 0.84496 0.79058 1.90763 1.15998 1.84694 1.48775 1.20338 0.88775 0.84373 0.77530 1.90756 1.16244 1.84804 1.48014 1.45661 1.11764 1.04629 1.73338 1.21552 0.91581 0.82992 1.03726 1.23283 0.93897 0.94444 0.88186 0.90256 1.22909 0.99848 0.94608 1.01181 1.22938 0.97644 0.98761 0.99937 1.23455 0.96689 0.80947 1.02283 1.89247 1.77560 1.23716 1.38021 0.92983 0.96172 0.96185 0.92430 0.92418 0.91089 0.91088 0.75320 0.74715 0.89443 0.89994 0.89976 0.89913 0.90408 0.90318 0.88857 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.56 16 11 C 0.11 1.99 5.67 -4.04 -0.02 1.96 16 12 N -0.69 -10.64 5.55 -60.72 -0.34 -10.98 16 13 C 0.50 7.74 7.89 -11.58 -0.09 7.65 16 14 O -0.53 -9.22 16.48 5.49 0.09 -9.13 16 15 C 0.51 6.94 7.89 -11.58 -0.09 6.85 16 16 O -0.52 -7.98 16.48 5.50 0.09 -7.89 16 17 N -0.70 -7.58 5.54 -60.73 -0.34 -7.92 16 18 C 0.12 1.05 5.28 -4.04 -0.02 1.03 16 19 C 0.06 0.40 3.31 -25.95 -0.09 0.31 16 20 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.15 -0.68 6.63 -25.16 -0.17 -0.85 16 22 C -0.15 -0.66 7.09 -25.16 -0.18 -0.83 16 23 C 0.04 0.24 7.63 37.94 0.29 0.53 16 24 O -0.37 -3.21 11.35 -35.23 -0.40 -3.61 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.41 5.77 7.94 -40.82 -0.32 5.44 16 33 H 0.42 4.31 7.94 -40.82 -0.32 3.99 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -33.09 349.55 -7.49 -40.57 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.52 Total: 2.04 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.06 Total: 1.14 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.06 Total: -44.96 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.22 Total: -20.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.09 -7.49 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339455217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.145 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds