Wall clock time and date at job start Tue Mar 31 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47212 * 299.99630 * 3 2 1 6 6 H 1.48495 * 109.47185 * 60.00068 * 3 2 1 7 7 C 1.37875 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46664 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.46723 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99901 * 180.02562 * 12 11 10 14 14 O 1.21349 * 120.00233 * 0.02562 * 13 12 11 15 15 C 1.49444 * 120.00172 * 179.97438 * 13 12 11 16 16 O 1.21350 * 120.00063 * 0.02562 * 15 13 12 17 17 N 1.34780 * 120.00415 * 179.97438 * 15 13 12 18 18 C 1.47426 * 125.64645 * 0.02729 * 17 15 13 19 19 C 1.54908 * 104.83177 * 155.60647 * 18 17 15 20 20 C 1.55154 * 101.58348 * 37.00798 * 19 18 17 21 21 C 1.47024 * 125.64847 * 179.71692 * 17 15 13 22 22 H 1.08997 * 109.88062 * 300.74548 * 21 17 15 23 23 C 1.53003 * 109.88155 * 61.90992 * 21 17 15 24 24 O 1.42895 * 109.46933 * 293.54407 * 23 21 17 25 25 H 0.97003 * 119.99638 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46614 * 59.99808 * 9 7 2 27 27 H 1.09001 * 109.46845 * 300.00080 * 9 7 2 28 28 H 1.09001 * 109.46653 * 60.00584 * 10 9 7 29 29 H 1.08992 * 109.47225 * 300.00419 * 10 9 7 30 30 H 1.09001 * 109.46895 * 60.00993 * 11 10 9 31 31 H 1.09000 * 109.47699 * 300.00015 * 11 10 9 32 32 H 0.97001 * 119.99668 * 0.02562 * 12 11 10 33 33 H 1.09004 * 110.36499 * 274.44757 * 18 17 15 34 34 H 1.08998 * 110.36482 * 36.65820 * 18 17 15 35 35 H 1.09000 * 111.00524 * 155.08850 * 19 18 17 36 36 H 1.08998 * 111.00272 * 278.89930 * 19 18 17 37 37 H 1.09005 * 110.72068 * 82.86125 * 20 19 18 38 38 H 1.08999 * 110.72351 * 206.13886 * 20 19 18 39 39 H 1.08996 * 109.46896 * 53.54625 * 23 21 17 40 40 H 1.08998 * 109.46785 * 173.54722 * 23 21 17 41 41 H 0.96701 * 114.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7898 -7.5930 0.0010 15 6 2.9540 -8.5072 0.0020 16 8 4.1470 -8.2856 0.0024 17 7 2.5047 -9.7780 0.0026 18 6 1.0888 -10.1887 0.0027 19 6 1.0880 -11.6093 -0.6150 20 6 2.3987 -12.2024 -0.0341 21 6 3.3455 -10.9841 -0.0032 22 1 3.9829 -10.9873 -0.8873 23 6 4.2052 -11.0251 1.2618 24 8 5.1458 -9.9498 1.2335 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8893 30 1 0.8533 -5.0451 -0.8887 31 1 0.8537 -5.0446 0.8914 32 1 3.3858 -5.9234 0.0021 33 1 0.7023 -10.2177 1.0215 34 1 0.4962 -9.5074 -0.6078 35 1 0.2203 -12.1792 -0.2828 36 1 1.1285 -11.5621 -1.7032 37 1 2.2345 -12.5888 0.9719 38 1 2.7928 -12.9805 -0.6877 39 1 3.5659 -10.9256 2.1389 40 1 4.7395 -11.9741 1.3073 41 1 5.7259 -9.9141 2.0064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343144353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:36 Heat of formation + Delta-G solvation = -124.099868 kcal Electronic energy + Delta-G solvation = -22373.451533 eV Core-core repulsion = 18867.258376 eV Total energy + Delta-G solvation = -3506.193157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77341 -39.04924 -37.51006 -36.41741 -35.51779 -33.33582 -31.87404 -31.19627 -30.54505 -27.21639 -25.60022 -24.81287 -23.04476 -21.99224 -21.02693 -20.62338 -19.32433 -17.70164 -17.28354 -17.16167 -16.48140 -16.30098 -15.62843 -15.26722 -14.69522 -14.60400 -14.43243 -14.27288 -13.85697 -13.58536 -13.45920 -12.96216 -12.51122 -12.30495 -12.05885 -11.88426 -11.77127 -11.71936 -11.60570 -11.11838 -11.03547 -10.91591 -10.72559 -10.56081 -10.16109 -9.87866 -9.62171 -9.22333 -9.07516 -8.94857 -8.77649 -8.37073 -6.01660 -4.04399 1.62870 2.34907 3.31102 3.38598 3.39055 3.42725 3.57905 3.85254 4.16985 4.38989 4.45317 4.56827 4.70594 4.84045 4.94651 5.01758 5.11753 5.24041 5.32663 5.34471 5.52380 5.64230 5.69085 5.70372 5.73157 5.83266 6.05951 6.11773 6.37201 6.57584 6.76286 6.98109 7.15174 7.46321 7.51821 7.63683 7.75385 7.90227 7.97238 8.19418 8.38692 9.02440 9.59971 11.09725 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.002762 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.333770 B =10134.394088 C =10776.300229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.693 5.693 13 C 0.502 3.498 14 O -0.527 6.527 15 C 0.515 3.485 16 O -0.481 6.481 17 N -0.594 5.594 18 C 0.096 3.904 19 C -0.135 4.135 20 C -0.126 4.126 21 C 0.137 3.863 22 H 0.084 0.916 23 C 0.064 3.936 24 O -0.539 6.539 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -27.283 1.464 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.282 3.718 14 O -0.404 6.404 15 C 0.297 3.703 16 O -0.352 6.352 17 N -0.331 5.331 18 C -0.027 4.027 19 C -0.173 4.173 20 C -0.164 4.164 21 C 0.034 3.966 22 H 0.102 0.898 23 C -0.015 4.015 24 O -0.342 6.342 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.552 -26.946 0.891 27.342 hybrid contribution 1.058 0.846 0.629 1.494 sum 5.610 -26.099 1.520 26.739 Atomic orbital electron populations 1.69975 1.06063 1.26580 1.50740 1.25028 0.94862 0.99332 0.95269 0.86518 0.80105 0.83701 0.77580 1.19716 1.20998 1.21009 1.21249 0.93104 0.90887 1.50723 0.92514 1.19036 0.93806 0.90814 0.97683 1.21922 0.99855 0.92986 1.01295 1.21813 0.91740 0.84767 1.02385 1.46056 1.12152 1.04941 1.71289 1.20083 0.88535 0.84496 0.78646 1.90686 1.16291 1.84403 1.49058 1.19942 0.88729 0.82813 0.78844 1.90835 1.15508 1.83275 1.45631 1.48247 1.08211 1.04126 1.72527 1.22651 0.82089 0.95821 1.02117 1.22856 0.97643 0.95646 1.01204 1.22635 0.95235 0.95951 1.02535 1.21676 0.92113 0.84437 0.98416 0.89775 1.22557 0.91500 0.90376 0.97095 1.86936 1.50361 1.50179 1.46757 0.92990 0.96213 0.96214 0.92467 0.92443 0.91205 0.91229 0.75360 0.91211 0.87840 0.89448 0.90361 0.90183 0.89530 0.93752 0.93029 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 11 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 12 N -0.69 -11.04 5.55 -60.73 -0.34 -11.38 16 13 C 0.50 8.06 7.86 -11.59 -0.09 7.97 16 14 O -0.53 -9.15 13.77 5.50 0.08 -9.08 16 15 C 0.51 7.69 7.66 -11.59 -0.09 7.60 16 16 O -0.48 -8.04 13.76 -18.60 -0.26 -8.29 16 17 N -0.59 -7.13 3.06 -163.52 -0.50 -7.63 16 18 C 0.10 0.95 6.08 -2.53 -0.02 0.93 16 19 C -0.14 -0.87 7.08 -24.58 -0.17 -1.04 16 20 C -0.13 -0.71 6.48 -24.90 -0.16 -0.88 16 21 C 0.14 1.28 3.29 -66.95 -0.22 1.06 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.06 0.56 6.47 37.16 0.24 0.80 16 24 O -0.54 -6.19 10.34 -59.33 -0.61 -6.80 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.41 6.09 7.94 -40.82 -0.32 5.77 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.22 6.13 -51.93 -0.32 0.90 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.37 2.71 9.12 45.56 0.42 3.12 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -34.13 338.98 -7.70 -41.83 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.67 Total: 2.85 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.22 Total: 2.89 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.10 Total: -45.15 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.79 Total: -24.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.13 -7.70 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343144353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.268 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds