Wall clock time and date at job start Tue Mar 31 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00386 * 2 1 4 4 H 1.48499 * 109.47248 * 240.00146 * 3 2 1 5 5 H 1.48506 * 109.46749 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46963 * 120.00035 * 3 2 1 7 7 C 1.38955 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00244 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99985 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99964 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99950 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.47015 * 111.00199 * 75.55146 * 13 12 10 15 15 C 1.53091 * 109.25988 * 182.39008 * 14 13 12 16 16 O 1.43019 * 109.26031 * 303.15068 * 15 14 13 17 17 C 1.43015 * 113.73564 * 58.67060 * 16 15 14 18 18 C 1.47015 * 110.99934 * 199.18615 * 13 12 10 19 19 H 1.08998 * 109.50812 * 297.54175 * 18 13 12 20 20 C 1.53002 * 109.50853 * 57.67236 * 18 13 12 21 21 H 1.09005 * 110.33282 * 304.37832 * 20 18 13 22 22 C 1.54476 * 110.37646 * 182.11883 * 20 18 13 23 23 C 1.54506 * 104.06483 * 217.19365 * 22 20 18 24 24 C 1.54474 * 104.06218 * 359.97438 * 23 22 20 25 25 O 1.44430 * 110.36995 * 66.62200 * 20 18 13 26 26 H 0.97005 * 119.99513 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00417 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47077 * 300.00382 * 12 10 9 29 29 H 1.09000 * 109.47324 * 59.99884 * 12 10 9 30 30 H 1.08995 * 109.50380 * 302.32897 * 14 13 12 31 31 H 1.09004 * 109.50459 * 62.41018 * 14 13 12 32 32 H 1.08997 * 109.50555 * 63.08494 * 15 14 13 33 33 H 1.08995 * 109.50971 * 183.17626 * 15 14 13 34 34 H 1.09005 * 109.50757 * 61.26732 * 17 16 15 35 35 H 1.09004 * 109.50573 * 181.39447 * 17 16 15 36 36 H 1.08995 * 110.50902 * 335.83902 * 22 20 18 37 37 H 1.09008 * 110.50781 * 98.54285 * 22 20 18 38 38 H 1.08999 * 110.51024 * 118.64826 * 23 22 20 39 39 H 1.09011 * 110.50646 * 241.35726 * 23 22 20 40 40 H 1.09004 * 110.37443 * 142.81413 * 24 23 22 41 41 H 1.09003 * 110.37220 * 265.03590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0050 14 6 2.8019 -6.1587 1.3235 15 6 3.8311 -7.2904 1.2620 16 8 3.1948 -8.4816 0.7914 17 6 2.5966 -8.3430 -0.5003 18 6 1.5549 -7.2219 -0.4566 19 1 0.7583 -7.4921 0.2365 20 6 0.9685 -7.0147 -1.8546 21 1 0.2847 -6.1658 -1.8564 22 6 0.2409 -8.2926 -2.3275 23 6 0.5554 -8.3665 -3.8384 24 6 1.4353 -7.1240 -4.0997 25 8 2.0252 -6.8110 -2.8179 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0016 28 1 0.6173 -4.9212 0.8869 29 1 0.6166 -4.9201 -0.8930 30 1 3.2944 -5.2349 1.6270 31 1 2.0250 -6.4111 2.0453 32 1 4.6356 -7.0140 0.5806 33 1 4.2405 -7.4645 2.2570 34 1 3.3654 -8.0972 -1.2329 35 1 2.1127 -9.2789 -0.7796 36 1 0.6342 -9.1689 -1.8122 37 1 -0.8332 -8.2029 -2.1647 38 1 1.1042 -9.2793 -4.0701 39 1 -0.3633 -8.3132 -4.4227 40 1 2.2121 -7.3556 -4.8286 41 1 0.8234 -6.2926 -4.4497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408068767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:25 Heat of formation + Delta-G solvation = -109.246752 kcal Electronic energy + Delta-G solvation = -23717.679979 eV Core-core repulsion = 20212.130902 eV Total energy + Delta-G solvation = -3505.549077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29514 -38.63966 -37.87268 -35.30254 -33.78687 -32.40797 -31.65266 -31.18847 -29.08546 -27.79192 -25.46428 -24.45198 -23.65460 -22.14952 -21.00978 -19.88855 -19.13226 -17.83431 -17.09582 -16.36069 -15.85557 -15.79197 -15.47155 -15.19705 -14.89439 -14.54344 -14.23313 -14.02880 -13.79582 -13.60020 -13.41587 -13.19747 -12.41505 -12.17760 -12.05390 -11.83266 -11.48428 -11.35053 -11.31583 -11.13454 -11.01360 -10.81039 -10.68291 -10.41504 -10.25944 -10.16777 -9.87069 -9.43319 -9.29538 -8.41855 -7.92144 -7.83396 -6.37424 -3.77825 3.22886 3.27882 3.32480 3.71231 3.93244 3.95102 4.02732 4.24528 4.47917 4.62531 4.77691 4.83793 4.98351 5.06992 5.19720 5.25196 5.29522 5.32988 5.35571 5.45697 5.53427 5.59669 5.61916 5.72602 5.76050 5.83334 5.87300 5.90079 5.98037 6.00668 6.17142 6.22631 6.33280 6.87721 7.20260 7.22738 7.37030 7.59000 8.10943 8.67425 9.23123 9.59759 10.12595 10.80561 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.004620 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.111859 B = 6058.990931 C = 6977.021122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.449 3.551 11 O -0.573 6.573 12 C 0.040 3.960 13 N -0.499 5.499 14 C 0.023 3.977 15 C 0.066 3.934 16 O -0.392 6.392 17 C 0.074 3.926 18 C 0.055 3.945 19 H 0.057 0.943 20 C 0.080 3.920 21 H 0.076 0.924 22 C -0.154 4.154 23 C -0.153 4.153 24 C 0.039 3.961 25 O -0.345 6.345 26 H 0.271 0.729 27 H 0.391 0.609 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -17.048 -3.545 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.234 3.766 11 O -0.456 6.456 12 C -0.092 4.092 13 N -0.223 5.223 14 C -0.105 4.105 15 C -0.011 4.011 16 O -0.310 6.310 17 C -0.003 4.003 18 C -0.054 4.054 19 H 0.074 0.926 20 C 0.021 3.979 21 H 0.093 0.907 22 C -0.193 4.193 23 C -0.191 4.191 24 C -0.039 4.039 25 O -0.263 6.263 26 H 0.081 0.919 27 H 0.224 0.776 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.997 -16.863 -3.717 17.296 hybrid contribution -1.283 0.993 0.292 1.648 sum -2.280 -15.870 -3.425 16.395 Atomic orbital electron populations 1.69607 1.05913 1.28120 1.50991 1.25234 0.95613 0.99616 0.97501 0.85934 0.78753 0.80569 0.79047 1.19928 1.21031 1.19963 1.19639 0.93298 0.82235 1.47427 0.88033 1.41849 1.09077 1.04550 1.65048 1.19683 0.88416 0.84352 0.84168 1.90506 1.13636 1.86907 1.54552 1.21995 0.94050 0.91588 1.01517 1.61703 1.32200 1.02104 1.26341 1.22830 0.97641 1.00963 0.89027 1.22665 0.94684 0.83842 0.99893 1.87912 1.73547 1.35077 1.34495 1.22609 0.95335 0.96782 0.85577 1.22338 0.96558 0.92092 0.94400 0.92560 1.23086 0.89212 0.96439 0.89114 0.90674 1.23076 1.01242 0.98830 0.96111 1.22925 1.00541 0.99571 0.96078 1.23436 0.96984 0.95645 0.87787 1.89353 1.32729 1.89321 1.14931 0.91929 0.77640 0.93330 0.89198 0.87976 0.94905 0.91872 0.88744 0.91110 0.89021 0.90283 0.90406 0.90740 0.90686 0.89224 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 10 C 0.45 10.88 7.53 -10.98 -0.08 10.79 16 11 O -0.57 -15.86 14.70 5.55 0.08 -15.78 16 12 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16 13 N -0.50 -8.82 4.09 -227.78 -0.93 -9.75 16 14 C 0.02 0.39 5.31 -3.71 -0.02 0.37 16 15 C 0.07 0.97 7.01 37.20 0.26 1.23 16 16 O -0.39 -5.80 10.83 -35.23 -0.38 -6.18 16 17 C 0.07 1.00 5.86 37.21 0.22 1.22 16 18 C 0.06 0.78 1.92 -67.60 -0.13 0.65 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 20 C 0.08 1.04 2.77 -25.96 -0.07 0.97 16 21 H 0.08 1.02 5.85 -51.93 -0.30 0.72 16 22 C -0.15 -1.45 6.46 -25.17 -0.16 -1.61 16 23 C -0.15 -1.32 7.09 -25.17 -0.18 -1.50 16 24 C 0.04 0.43 7.63 37.93 0.29 0.72 16 25 O -0.35 -5.25 10.39 -35.23 -0.37 -5.62 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 28 H 0.05 0.83 7.99 -51.93 -0.42 0.41 16 29 H 0.09 1.54 5.38 -51.93 -0.28 1.26 16 30 H 0.10 1.96 6.72 -51.93 -0.35 1.61 16 31 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.07 7.46 -51.93 -0.39 0.68 16 35 H 0.09 1.00 6.35 -51.93 -0.33 0.67 16 36 H 0.08 0.68 5.99 -51.93 -0.31 0.37 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -32.63 323.71 -7.23 -39.86 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.01 Total: 9.59 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.14 Total: 5.52 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.26 Total: -48.58 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.67 Total: -27.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.63 -7.23 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408068767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.384 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds