Wall clock time and date at job start Tue Mar 31 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00386 * 2 1 4 4 H 1.48499 * 109.47248 * 240.00146 * 3 2 1 5 5 H 1.48506 * 109.46749 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46963 * 120.00035 * 3 2 1 7 7 C 1.38955 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00244 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99985 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99964 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99950 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.47015 * 111.00199 * 75.55146 * 13 12 10 15 15 C 1.53091 * 109.25988 * 182.39008 * 14 13 12 16 16 O 1.43019 * 109.26031 * 303.15068 * 15 14 13 17 17 C 1.43015 * 113.73564 * 58.67060 * 16 15 14 18 18 C 1.47015 * 110.99934 * 199.18615 * 13 12 10 19 19 H 1.08998 * 109.50812 * 297.54175 * 18 13 12 20 20 C 1.53002 * 109.50853 * 57.67236 * 18 13 12 21 21 H 1.09005 * 110.33282 * 304.37832 * 20 18 13 22 22 C 1.54476 * 110.37646 * 182.11883 * 20 18 13 23 23 C 1.54506 * 104.06483 * 217.19365 * 22 20 18 24 24 C 1.54474 * 104.06218 * 359.97438 * 23 22 20 25 25 O 1.44430 * 110.36995 * 66.62200 * 20 18 13 26 26 H 0.97005 * 119.99513 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00417 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47077 * 300.00382 * 12 10 9 29 29 H 1.09000 * 109.47324 * 59.99884 * 12 10 9 30 30 H 1.08995 * 109.50380 * 302.32897 * 14 13 12 31 31 H 1.09004 * 109.50459 * 62.41018 * 14 13 12 32 32 H 1.08997 * 109.50555 * 63.08494 * 15 14 13 33 33 H 1.08995 * 109.50971 * 183.17626 * 15 14 13 34 34 H 1.09005 * 109.50757 * 61.26732 * 17 16 15 35 35 H 1.09004 * 109.50573 * 181.39447 * 17 16 15 36 36 H 1.08995 * 110.50902 * 335.83902 * 22 20 18 37 37 H 1.09008 * 110.50781 * 98.54285 * 22 20 18 38 38 H 1.08999 * 110.51024 * 118.64826 * 23 22 20 39 39 H 1.09011 * 110.50646 * 241.35726 * 23 22 20 40 40 H 1.09004 * 110.37443 * 142.81413 * 24 23 22 41 41 H 1.09003 * 110.37220 * 265.03590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0050 14 6 2.8019 -6.1587 1.3235 15 6 3.8311 -7.2904 1.2620 16 8 3.1948 -8.4816 0.7914 17 6 2.5966 -8.3430 -0.5003 18 6 1.5549 -7.2219 -0.4566 19 1 0.7583 -7.4921 0.2365 20 6 0.9685 -7.0147 -1.8546 21 1 0.2847 -6.1658 -1.8564 22 6 0.2409 -8.2926 -2.3275 23 6 0.5554 -8.3665 -3.8384 24 6 1.4353 -7.1240 -4.0997 25 8 2.0252 -6.8110 -2.8179 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0016 28 1 0.6173 -4.9212 0.8869 29 1 0.6166 -4.9201 -0.8930 30 1 3.2944 -5.2349 1.6270 31 1 2.0250 -6.4111 2.0453 32 1 4.6356 -7.0140 0.5806 33 1 4.2405 -7.4645 2.2570 34 1 3.3654 -8.0972 -1.2329 35 1 2.1127 -9.2789 -0.7796 36 1 0.6342 -9.1689 -1.8122 37 1 -0.8332 -8.2029 -2.1647 38 1 1.1042 -9.2793 -4.0701 39 1 -0.3633 -8.3132 -4.4227 40 1 2.2121 -7.3556 -4.8286 41 1 0.8234 -6.2926 -4.4497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408068767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:24 Heat of formation + Delta-G solvation = -134.835988 kcal Electronic energy + Delta-G solvation = -23718.789612 eV Core-core repulsion = 20212.130902 eV Total energy + Delta-G solvation = -3506.658710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44363 -40.01371 -39.41036 -36.69130 -35.80535 -33.43407 -33.27079 -32.58342 -30.48570 -28.88426 -27.20160 -25.55518 -25.23128 -23.13669 -21.89416 -21.28472 -20.79326 -19.88675 -18.29659 -17.55916 -17.46974 -16.79680 -16.64556 -16.44187 -16.41333 -16.02809 -15.75643 -15.47326 -15.10479 -14.95249 -14.73963 -14.51445 -13.93947 -13.49947 -13.37851 -13.32479 -12.93873 -12.61503 -12.51352 -12.43747 -12.29863 -12.12959 -12.07818 -11.88105 -11.70577 -11.46834 -11.25234 -10.96624 -10.41839 -10.28311 -10.00316 -9.24905 -8.46157 -5.94783 1.39255 1.40588 1.51677 2.05685 2.26343 2.53578 2.84650 3.04746 3.19805 3.32571 3.64567 3.68688 3.79801 3.99411 4.03449 4.09986 4.18850 4.21849 4.28293 4.31653 4.43004 4.46043 4.55910 4.61044 4.68830 4.80616 4.83582 4.86729 4.90010 4.99702 5.03453 5.15072 5.22973 5.40418 5.79525 5.94836 6.01082 6.06715 6.19368 6.61316 7.13456 7.56498 8.13282 8.71219 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.004620 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.111859 B = 6058.990931 C = 6977.021122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.054 3.946 13 N -0.524 5.524 14 C 0.024 3.976 15 C 0.072 3.928 16 O -0.393 6.393 17 C 0.076 3.924 18 C 0.056 3.944 19 H 0.074 0.926 20 C 0.074 3.926 21 H 0.065 0.935 22 C -0.146 4.146 23 C -0.144 4.144 24 C 0.029 3.971 25 O -0.384 6.384 26 H 0.277 0.723 27 H 0.395 0.605 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -18.469 -3.730 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.077 4.077 13 N -0.249 5.249 14 C -0.104 4.104 15 C -0.005 4.005 16 O -0.312 6.312 17 C -0.001 4.001 18 C -0.052 4.052 19 H 0.092 0.908 20 C 0.016 3.984 21 H 0.082 0.918 22 C -0.184 4.184 23 C -0.182 4.182 24 C -0.048 4.048 25 O -0.303 6.303 26 H 0.087 0.913 27 H 0.228 0.772 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.363 -18.307 -3.907 18.868 hybrid contribution -0.850 1.412 0.313 1.677 sum -3.212 -16.895 -3.594 17.569 Atomic orbital electron populations 1.69668 1.06796 1.29297 1.50481 1.26012 0.96540 1.02289 0.96317 0.85006 0.77783 0.76729 0.78904 1.19872 1.19337 1.19686 1.19603 0.92612 0.84013 1.49954 0.90506 1.41909 1.09188 1.04644 1.65604 1.20697 0.88288 0.85756 0.82073 1.90473 1.15722 1.87788 1.55868 1.21810 0.93684 0.89008 1.03209 1.61622 1.32883 1.03422 1.27009 1.22770 0.98314 1.00143 0.89139 1.22635 0.93566 0.83337 1.00919 1.87912 1.73533 1.34719 1.35000 1.22718 0.94759 0.98032 0.84576 1.22475 0.97000 0.90382 0.95366 0.90827 1.23177 0.88812 0.98090 0.88337 0.91756 1.23067 1.01875 0.97047 0.96408 1.22902 1.00866 0.98561 0.95823 1.23637 0.97677 0.96914 0.86581 1.89318 1.34368 1.89878 1.16745 0.91316 0.77155 0.91256 0.87585 0.91343 0.93401 0.93632 0.86134 0.93129 0.85717 0.89037 0.88583 0.89423 0.88873 0.88549 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.40 13.05 21.66 0.28 -50.11 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.58 -30.53 5.29 -306.98 -1.62 -32.15 16 10 C 0.44 22.22 7.53 87.66 0.66 22.88 16 11 O -0.61 -35.48 14.70 -3.05 -0.04 -35.53 16 12 C 0.05 2.00 5.34 85.56 0.46 2.46 16 13 N -0.52 -18.44 4.09 -874.55 -3.58 -22.01 16 14 C 0.02 0.81 5.31 86.31 0.46 1.27 16 15 C 0.07 2.08 7.01 72.01 0.50 2.59 16 16 O -0.39 -10.91 10.83 -148.98 -1.61 -12.53 16 17 C 0.08 1.91 5.86 72.01 0.42 2.33 16 18 C 0.06 1.49 1.92 44.93 0.09 1.58 16 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.07 1.81 2.77 31.10 0.09 1.90 16 21 H 0.06 1.68 5.85 -2.38 -0.01 1.67 16 22 C -0.15 -2.26 6.46 31.61 0.20 -2.06 16 23 C -0.14 -2.05 7.09 31.61 0.22 -1.83 16 24 C 0.03 0.61 7.63 72.48 0.55 1.16 16 25 O -0.38 -11.56 10.39 -148.98 -1.55 -13.10 16 26 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 27 H 0.39 19.84 7.90 -92.71 -0.73 19.11 16 28 H 0.07 2.29 7.99 -2.39 -0.02 2.27 16 29 H 0.11 3.60 5.38 -2.39 -0.01 3.59 16 30 H 0.07 2.74 6.72 -2.39 -0.02 2.72 16 31 H 0.05 1.43 8.13 -2.38 -0.02 1.41 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 1.50 7.46 -2.38 -0.02 1.48 16 35 H 0.13 2.30 6.35 -2.39 -0.02 2.28 16 36 H 0.09 1.19 5.99 -2.39 -0.01 1.18 16 37 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.13 323.71 -0.84 -72.97 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.31 Total: 33.17 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 4.94 Total: 13.56 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.92 Total: -104.28 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -3.21 Total: -61.16 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.13 -0.84 -72.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408068767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.864 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds