Wall clock time and date at job start Tue Mar 31 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 13 13 N 1.46496 * 109.47487 * 299.99762 * 12 2 1 14 14 C 1.34777 * 120.00012 * 180.02562 * 13 12 2 15 15 O 1.21278 * 120.00191 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99991 * 180.02562 * 14 13 12 17 17 H 1.09005 * 110.33045 * 55.70334 * 16 14 13 18 18 C 1.54477 * 110.37381 * 293.45171 * 16 14 13 19 19 C 1.54509 * 104.06425 * 217.19161 * 18 16 14 20 20 C 1.54480 * 104.06051 * 359.97438 * 19 18 16 21 21 H 1.09003 * 110.37419 * 265.04148 * 20 19 18 22 22 C 1.50700 * 110.37178 * 142.81092 * 20 19 18 23 23 N 1.34784 * 119.99826 * 65.00191 * 22 20 19 24 24 O 1.21282 * 120.00275 * 244.99844 * 22 20 19 25 25 O 1.44422 * 110.37277 * 177.94954 * 16 14 13 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47362 * 60.00551 * 12 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 12 2 1 35 35 H 0.97004 * 119.99916 * 0.02562 * 13 12 2 36 36 H 1.09005 * 110.50636 * 335.83358 * 18 16 14 37 37 H 1.08991 * 110.51278 * 98.54231 * 18 16 14 38 38 H 1.08996 * 110.51603 * 118.64021 * 19 18 16 39 39 H 1.09001 * 110.50989 * 241.35415 * 19 18 16 40 40 H 0.96996 * 119.99706 * 359.97438 * 23 22 20 41 41 H 0.97002 * 120.00029 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5198 -4.0082 10 1 1.8271 -0.4198 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5755 -1.4764 3.7808 16 6 1.3748 0.2192 4.9000 17 1 0.2875 0.2935 4.8767 18 6 2.0076 1.6244 5.0063 19 6 2.2413 1.8173 6.5214 20 6 1.7214 0.5061 7.1513 21 1 0.6880 0.6251 7.4769 22 6 2.5928 0.1001 8.3119 23 7 2.6516 0.8744 9.4136 24 8 3.2410 -0.9234 8.2547 25 8 1.8060 -0.4734 6.0917 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 0.7083 1.1609 -3.4844 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7217 1.2491 35 1 0.9937 0.7579 2.3564 36 1 2.9540 1.6589 4.4665 37 1 1.3222 2.3818 4.6261 38 1 3.3031 1.9472 6.7307 39 1 1.6713 2.6701 6.8902 40 1 2.1334 1.6930 9.4592 41 1 3.2127 0.6133 10.1605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600001604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:26 Heat of formation + Delta-G solvation = -154.128913 kcal Electronic energy + Delta-G solvation = -22899.152435 eV Core-core repulsion = 19391.657122 eV Total energy + Delta-G solvation = -3507.495314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63369 -40.53816 -39.10882 -37.99023 -35.09327 -34.86694 -33.26783 -32.63477 -30.92611 -27.55669 -27.53502 -27.03840 -25.23174 -23.06496 -21.67679 -21.42783 -20.61910 -19.12262 -18.29368 -17.87390 -17.66992 -17.44840 -16.91867 -16.53243 -16.23749 -15.76922 -15.53534 -15.28925 -14.82070 -14.78494 -14.60681 -14.39282 -13.98682 -13.32794 -13.19064 -13.06358 -12.73420 -12.71157 -12.63044 -12.57396 -12.23344 -12.12965 -11.86066 -11.47374 -11.38421 -11.25989 -10.85199 -10.73770 -10.70995 -10.59349 -10.39258 -9.99328 -8.02578 -6.17822 1.43556 1.44886 1.50888 1.51555 1.58988 1.83298 2.39177 2.49453 3.11422 3.20979 3.43335 3.73418 3.82263 3.95557 4.06624 4.09706 4.39092 4.45010 4.49737 4.58502 4.72648 4.86688 4.98596 4.99325 5.04358 5.07792 5.12446 5.21367 5.35465 5.54428 5.60248 5.67870 5.69696 5.88187 6.18192 6.22679 6.44582 6.44789 6.64325 6.85566 7.28941 7.32389 7.49631 8.96003 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043690 B = 0.003194 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.727869 B = 8763.508919 C = 9053.835908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.054 3.946 3 C -0.120 4.120 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.147 3.853 13 N -0.699 5.699 14 C 0.502 3.498 15 O -0.588 6.588 16 C 0.057 3.943 17 H 0.137 0.863 18 C -0.141 4.141 19 C -0.130 4.130 20 C 0.044 3.956 21 H 0.142 0.858 22 C 0.515 3.485 23 N -0.823 5.823 24 O -0.590 6.590 25 O -0.367 6.367 26 H 0.064 0.936 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.414 0.586 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.423 0.577 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 11.907 21.040 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 C -0.178 4.178 4 C -0.572 4.572 5 H 0.058 0.942 6 C -0.168 4.168 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.205 1.205 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.468 6.468 16 C -0.003 4.003 17 H 0.154 0.846 18 C -0.179 4.179 19 C -0.168 4.168 20 C -0.017 4.017 21 H 0.159 0.841 22 C 0.299 3.701 23 N -0.390 5.390 24 O -0.469 6.469 25 O -0.286 6.286 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.252 0.748 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.163 0.837 40 H 0.256 0.744 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.728 10.440 20.768 23.541 hybrid contribution 0.437 -0.415 -0.960 1.134 sum -3.291 10.025 19.807 22.443 Atomic orbital electron populations 1.21686 0.96815 0.98694 1.00760 1.18340 0.93453 0.93169 0.89742 1.21670 0.97827 0.97545 1.00778 1.21262 1.31903 1.12230 0.91830 0.94156 1.25391 0.95115 0.95588 1.00740 1.69877 1.36768 1.23113 1.23712 0.85870 0.78588 0.78834 0.79817 1.20482 1.20527 1.20441 1.21292 0.96888 0.95108 0.84374 1.45934 1.52773 1.32023 1.04508 1.21051 0.80165 0.84295 0.85629 1.90703 1.39956 1.28729 1.87402 1.23134 1.01598 0.92202 0.83380 0.84563 1.23020 1.02722 0.94273 0.97864 1.22985 1.03489 0.96691 0.93595 1.23349 1.01236 0.89461 0.87624 0.84066 1.20703 0.81519 0.83032 0.84818 1.43486 1.50561 1.27442 1.17471 1.90800 1.46312 1.27704 1.82127 1.89428 1.88524 1.33912 1.16693 0.91698 0.96552 0.93817 0.93729 0.96552 0.91743 0.92920 0.94740 0.94737 0.74824 0.91953 0.84656 0.90963 0.83681 0.74414 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -28.45 8.01 25.60 0.21 -28.25 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C 0.03 1.67 5.15 84.66 0.44 2.11 16 7 N -0.90 -47.06 9.35 21.45 0.20 -46.86 16 8 Si 0.94 42.77 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.15 6.40 4.50 86.38 0.39 6.79 16 13 N -0.70 -23.69 4.96 -463.07 -2.29 -25.99 16 14 C 0.50 18.06 7.07 87.66 0.62 18.68 16 15 O -0.59 -28.55 16.55 15.34 0.25 -28.30 16 16 C 0.06 1.38 3.70 30.35 0.11 1.49 16 17 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 18 C -0.14 -2.17 6.62 31.61 0.21 -1.96 16 19 C -0.13 -1.36 6.61 31.61 0.21 -1.15 16 20 C 0.04 0.75 3.71 30.35 0.11 0.86 16 21 H 0.14 1.15 8.14 -2.39 -0.02 1.14 16 22 C 0.51 10.97 7.35 87.66 0.64 11.61 16 23 N -0.82 -7.07 8.86 -173.52 -1.54 -8.61 16 24 O -0.59 -21.24 17.39 15.32 0.27 -20.97 16 25 O -0.37 -11.31 10.18 -121.27 -1.23 -12.55 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 29 H 0.04 1.51 6.86 -2.39 -0.02 1.50 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 32 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 11.11 6.16 -92.71 -0.57 10.54 16 36 H 0.06 1.29 7.86 -2.38 -0.02 1.27 16 37 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.94 7.87 -2.39 -0.02 0.92 16 39 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.42 -0.18 8.83 -92.71 -0.82 -1.00 16 41 H 0.41 3.13 8.93 -92.71 -0.83 2.30 16 Total: -1.00 -84.63 334.24 0.61 -84.02 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -1.14 Total: 11.08 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.07 Total: 3.37 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.63 Total: -81.46 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -0.71 Total: -61.82 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -84.63 0.61 -84.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600001604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.109 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds