Wall clock time and date at job start Tue Mar 31 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47265 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99682 * 294.30013 * 10 9 7 12 12 C 1.53234 * 109.33833 * 172.74645 * 11 10 9 13 13 N 1.47077 * 108.52246 * 53.82947 * 12 11 10 14 14 C 1.34777 * 120.88277 * 128.79351 * 13 12 11 15 15 O 1.21285 * 120.00008 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00039 * 0.02562 * 14 13 12 17 17 H 1.08998 * 108.84388 * 300.69776 * 16 14 13 18 18 C 1.52939 * 108.88778 * 182.12439 * 16 14 13 19 19 C 1.54996 * 109.04301 * 208.99119 * 18 16 14 20 20 S 1.83990 * 100.81947 * 41.60530 * 19 18 16 21 21 C 1.53705 * 108.88898 * 59.27337 * 16 14 13 22 22 C 1.47084 * 118.23811 * 308.81159 * 13 12 11 23 23 C 1.46893 * 111.00154 * 169.99803 * 10 9 7 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 26 26 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 27 27 H 1.09001 * 109.48690 * 292.70445 * 11 10 9 28 28 H 1.08995 * 109.48844 * 52.78320 * 11 10 9 29 29 H 1.09002 * 109.63217 * 294.11947 * 12 11 10 30 30 H 1.09001 * 109.78960 * 173.63400 * 12 11 10 31 31 H 1.08998 * 109.60396 * 329.03613 * 18 16 14 32 32 H 1.09003 * 109.60491 * 89.17204 * 18 16 14 33 33 H 1.09010 * 111.23511 * 283.70382 * 19 18 16 34 34 H 1.08995 * 111.15210 * 159.48250 * 19 18 16 35 35 H 1.08995 * 110.34283 * 242.49581 * 21 16 14 36 36 H 1.08994 * 110.34211 * 4.75475 * 21 16 14 37 37 H 1.08998 * 109.62933 * 291.47633 * 22 13 12 38 38 H 1.08997 * 109.79042 * 170.99237 * 22 13 12 39 39 H 1.08998 * 109.49274 * 307.21057 * 23 10 9 40 40 H 1.09000 * 109.49528 * 67.29163 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9767 -3.6491 -1.2495 12 6 4.0788 -4.7077 -1.1377 13 7 3.4615 -5.9862 -0.7535 14 6 3.7114 -7.1122 -1.4507 15 8 3.1933 -8.1578 -1.1200 16 6 4.6347 -7.0722 -2.6411 17 1 4.2338 -6.3722 -3.3741 18 6 4.6944 -8.4658 -3.2683 19 6 6.0752 -8.6565 -3.9461 20 16 7.1843 -7.8960 -2.6904 21 6 6.0158 -6.5767 -2.1832 22 6 2.5638 -6.0032 0.4114 23 6 1.5212 -4.8934 0.2387 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5567 0.8904 26 1 0.6247 -2.5570 -0.8895 27 1 2.3147 -3.8993 -2.0785 28 1 3.4270 -2.6722 -1.4251 29 1 4.8002 -4.4066 -0.3781 30 1 4.5829 -4.8185 -2.0978 31 1 4.5583 -9.2213 -2.4945 32 1 3.9064 -8.5649 -4.0149 33 1 6.1277 -8.1195 -4.8933 34 1 6.3033 -9.7134 -4.0833 35 1 6.2652 -5.6386 -2.6788 36 1 6.0334 -6.4507 -1.1007 37 1 3.1395 -5.8265 1.3200 38 1 2.0630 -6.9690 0.4774 39 1 0.9161 -4.8190 1.1423 40 1 0.8795 -5.1263 -0.6111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:34 Heat of formation + Delta-G solvation = -50.836112 kcal Electronic energy + Delta-G solvation = -20899.603968 eV Core-core repulsion = 17839.340638 eV Total energy + Delta-G solvation = -3060.263331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64401 -39.29500 -36.68266 -36.26421 -34.56338 -32.45756 -30.82916 -29.67344 -27.30477 -26.32700 -24.81116 -24.24240 -22.99025 -21.39482 -19.99383 -18.98020 -18.52303 -17.71162 -17.36007 -16.64565 -16.33498 -16.06213 -15.77799 -15.62253 -15.41263 -15.14710 -14.81111 -14.35562 -14.09496 -13.94133 -13.43239 -13.28915 -13.22219 -13.06293 -12.78286 -12.75758 -12.52801 -12.36169 -12.21283 -12.05320 -11.89471 -11.86700 -11.14398 -10.83219 -10.79537 -10.58079 -9.88209 -9.19482 -8.75695 -8.67497 -6.39070 0.80358 1.25583 1.46653 1.56349 1.65105 1.79594 1.82711 2.57054 3.04071 3.16633 3.21388 3.45809 3.67609 3.79572 3.91683 3.93465 4.06159 4.14199 4.16389 4.20940 4.31407 4.42294 4.46449 4.55551 4.62521 4.70152 4.75005 4.77864 4.82511 4.88712 4.97461 5.03614 5.11426 5.33164 5.72436 5.92483 6.25218 6.31179 6.39633 6.58352 6.96155 7.42211 8.71460 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.003798 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.403969 B = 7370.365998 C = 8059.318366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.595 4.595 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.534 5.534 11 C 0.049 3.951 12 C 0.117 3.883 13 N -0.609 5.609 14 C 0.519 3.481 15 O -0.576 6.576 16 C -0.110 4.110 17 H 0.130 0.870 18 C -0.113 4.113 19 C -0.048 4.048 20 S -0.341 6.341 21 C -0.054 4.054 22 C 0.127 3.873 23 C 0.043 3.957 24 H 0.253 0.747 25 H -0.001 1.001 26 H -0.045 1.045 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 -14.188 -8.366 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.633 4.633 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.259 5.259 11 C -0.080 4.080 12 C -0.005 4.005 13 N -0.341 5.341 14 C 0.308 3.692 15 O -0.455 6.455 16 C -0.132 4.132 17 H 0.148 0.852 18 C -0.152 4.152 19 C -0.196 4.196 20 S -0.116 6.116 21 C -0.202 4.202 22 C 0.004 3.996 23 C -0.086 4.086 24 H 0.062 0.938 25 H 0.017 0.983 26 H -0.028 1.028 27 H 0.035 0.965 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 13.779 -13.316 -7.428 20.551 hybrid contribution -2.322 -1.390 -0.623 2.777 sum 11.457 -14.706 -8.051 20.306 Atomic orbital electron populations 1.70908 1.08149 1.29649 1.49132 1.27412 0.96432 1.06803 0.92821 0.82850 0.74189 0.70750 0.77777 1.19681 1.21385 1.19112 1.22278 0.95121 0.91702 1.54237 0.91884 1.19538 0.90770 0.90325 0.92620 1.61927 1.26619 1.02184 1.35124 1.22406 0.95710 1.00312 0.89591 1.22171 0.94665 0.80606 1.03069 1.48265 1.46717 1.09088 1.30019 1.20921 0.81554 0.82530 0.84170 1.90659 1.53507 1.31219 1.70162 1.21914 0.94334 1.01146 0.95799 0.85224 1.22247 0.97602 0.94705 1.00641 1.24416 0.92104 1.04859 0.98201 1.88135 1.29919 1.40859 1.52654 1.24117 0.91370 0.99588 1.05159 1.21588 0.91356 0.98230 0.88405 1.22453 0.95714 0.90033 1.00436 0.93820 0.98319 1.02766 0.96469 0.89409 0.89428 0.86161 0.90769 0.88201 0.86678 0.86169 0.85414 0.88586 0.90045 0.89118 0.90202 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.65 21.45 0.29 -56.68 16 2 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 3 Si 1.12 48.22 29.90 68.60 2.05 50.27 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.60 -32.21 8.41 25.60 0.22 -32.00 16 8 H 0.06 3.30 7.13 -2.91 -0.02 3.28 16 9 C 0.19 9.86 4.04 85.56 0.35 10.21 16 10 N -0.53 -21.49 4.62 -899.83 -4.16 -25.65 16 11 C 0.05 1.63 5.46 86.38 0.47 2.10 16 12 C 0.12 2.75 5.35 86.35 0.46 3.21 16 13 N -0.61 -15.93 2.95 -817.93 -2.42 -18.34 16 14 C 0.52 13.30 6.82 87.66 0.60 13.90 16 15 O -0.58 -18.74 14.80 -3.05 -0.05 -18.79 16 16 C -0.11 -1.90 2.26 -11.32 -0.03 -1.92 16 17 H 0.13 1.71 7.62 -2.39 -0.02 1.69 16 18 C -0.11 -1.83 5.52 31.26 0.17 -1.66 16 19 C -0.05 -0.62 7.52 72.67 0.55 -0.07 16 20 S -0.34 -6.47 23.22 -56.49 -1.31 -7.78 16 21 C -0.05 -0.87 5.25 72.22 0.38 -0.49 16 22 C 0.13 3.68 6.59 86.35 0.57 4.25 16 23 C 0.04 1.48 5.62 86.39 0.49 1.97 16 24 H 0.25 15.57 7.22 -92.71 -0.67 14.90 16 25 H 0.00 -0.07 7.84 -2.38 -0.02 -0.09 16 26 H -0.05 -2.49 7.99 -2.39 -0.02 -2.51 16 27 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 3.16 6.67 -2.39 -0.02 3.15 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.12 1.92 4.64 -2.39 -0.01 1.91 16 31 H 0.07 1.62 6.89 -2.39 -0.02 1.60 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.13 1.44 7.44 -2.39 -0.02 1.42 16 36 H 0.10 1.76 7.08 -2.39 -0.02 1.74 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.64 7.07 -2.39 -0.02 2.62 16 39 H 0.08 2.75 7.99 -2.39 -0.02 2.73 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -69.58 321.33 0.22 -69.37 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.12 Total: 9.73 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.68 Total: -2.13 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -6.28 Total: -100.67 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.05 Total: 50.27 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.31 Total: -7.78 kcal Total: -69.58 0.22 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.530 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds