Wall clock time and date at job start Tue Mar 31 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00276 * 2 1 4 4 H 1.48509 * 109.47072 * 269.99970 * 3 2 1 5 5 H 1.48496 * 109.47289 * 29.99995 * 3 2 1 6 6 H 1.48507 * 109.47052 * 150.00250 * 3 2 1 7 7 C 1.38805 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99620 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00402 * 179.97438 * 7 2 1 10 10 C 1.80991 * 100.00267 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47522 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99187 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00255 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99742 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46966 * 184.63615 * 14 13 11 16 16 C 1.54202 * 110.81421 * 65.20769 * 15 14 13 17 17 C 1.55854 * 102.84144 * 216.60762 * 16 15 14 18 18 C 1.54907 * 101.27324 * 36.35562 * 17 16 15 19 19 N 1.47868 * 110.84859 * 306.20444 * 15 14 13 20 20 C 1.47870 * 108.41823 * 238.35305 * 19 15 14 21 21 C 1.54873 * 104.91452 * 23.81172 * 20 19 15 22 22 C 1.54214 * 110.81794 * 187.28588 * 15 14 13 23 23 H 0.97006 * 119.99964 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47282 * 59.99900 * 10 9 7 25 25 H 1.09007 * 109.47438 * 300.00480 * 10 9 7 26 26 H 0.97001 * 119.99653 * 359.97438 * 13 11 10 27 27 H 1.08998 * 109.46885 * 64.64091 * 14 13 11 28 28 H 1.08997 * 109.47262 * 304.63539 * 14 13 11 29 29 H 1.09001 * 110.67317 * 336.16898 * 16 15 14 30 30 H 1.09000 * 110.67375 * 99.31420 * 16 15 14 31 31 H 1.09001 * 111.70720 * 278.15810 * 17 16 15 32 32 H 1.09007 * 110.65475 * 154.10526 * 17 16 15 33 33 H 1.08995 * 110.39196 * 202.89678 * 18 17 16 34 34 H 1.09001 * 110.48800 * 80.56169 * 18 17 16 35 35 H 1.08998 * 110.35013 * 142.67519 * 20 19 15 36 36 H 1.09008 * 110.34640 * 264.84840 * 20 19 15 37 37 H 1.08992 * 110.98964 * 81.04200 * 21 20 19 38 38 H 1.09000 * 110.98652 * 204.82481 * 21 20 19 39 39 H 1.08994 * 110.70709 * 216.83165 * 22 15 14 40 40 H 1.08996 * 110.70397 * 340.07188 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2328 0.0002 12 8 6.3439 -2.2965 -0.0003 13 7 6.0455 -4.4949 -0.0001 14 6 7.4905 -4.7360 -0.0005 15 6 7.7569 -6.2381 -0.1174 16 6 7.2742 -6.7758 -1.4796 17 6 6.7231 -8.1884 -1.1189 18 6 6.0962 -7.9226 0.2725 19 7 7.0303 -6.9847 0.9320 20 6 8.0154 -7.7424 1.7333 21 6 9.3511 -6.9811 1.5468 22 6 9.2578 -6.5441 0.0611 23 1 -0.4850 0.8401 0.0004 24 1 3.6432 -3.4319 -0.8896 25 1 3.6438 -3.4316 0.8904 26 1 5.4288 -5.2437 0.0000 27 1 7.9215 -4.3618 0.9280 28 1 7.9448 -4.2196 -0.8461 29 1 6.4984 -6.1322 -1.8944 30 1 8.1092 -6.8702 -2.1739 31 1 7.5213 -8.9277 -1.0527 32 1 5.9638 -8.4997 -1.8364 33 1 6.0252 -8.8502 0.8405 34 1 5.1118 -7.4667 0.1666 35 1 7.7255 -7.7477 2.7840 36 1 8.1033 -8.7627 1.3598 37 1 9.4021 -6.1148 2.2062 38 1 10.2029 -7.6420 1.7071 39 1 9.5671 -7.3543 -0.5991 40 1 9.8569 -5.6510 -0.1162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619574056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:40 Heat of formation + Delta-G solvation = -36.634364 kcal Electronic energy + Delta-G solvation = -20443.383513 eV Core-core repulsion = 17383.736016 eV Total energy + Delta-G solvation = -3059.647497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91786 -38.83444 -34.44882 -34.01223 -32.39705 -31.83535 -29.86698 -28.38019 -25.77045 -25.60845 -24.83387 -21.86156 -21.54072 -20.16404 -19.33175 -17.78860 -16.77242 -16.28824 -15.69322 -15.36793 -15.19227 -14.97177 -14.78357 -14.08081 -14.00368 -13.72433 -13.58343 -13.15169 -12.77556 -12.74417 -12.43974 -12.05710 -11.88850 -11.77888 -11.49944 -11.28397 -11.22476 -11.20139 -10.96966 -10.94888 -10.74371 -10.52921 -9.81327 -9.40803 -8.96490 -8.80908 -8.70351 -8.43816 -6.85876 -6.24868 -3.95681 2.85328 3.11544 3.35652 3.39429 3.54588 3.57914 3.77768 4.12726 4.19577 4.37468 4.50639 4.57940 4.72071 4.73118 4.79978 4.85289 5.06240 5.14165 5.14521 5.17766 5.33309 5.42476 5.47595 5.49689 5.52511 5.59157 5.60800 5.71095 5.75736 5.80944 5.86109 5.93094 5.97171 6.10225 6.56270 6.64541 6.78900 7.81110 7.98411 8.46029 8.64444 9.21632 10.84469 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.033767 B = 0.003484 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.024488 B = 8035.904423 C = 8384.948570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.529 3.471 12 O -0.526 6.526 13 N -0.723 5.723 14 C 0.151 3.849 15 C 0.078 3.922 16 C -0.134 4.134 17 C -0.152 4.152 18 C 0.033 3.967 19 N -0.507 5.507 20 C 0.037 3.963 21 C -0.132 4.132 22 C -0.128 4.128 23 H 0.270 0.730 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.400 0.600 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.621 -19.946 -0.281 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.273 4.273 11 C 0.315 3.685 12 O -0.401 6.401 13 N -0.377 5.377 14 C 0.026 3.974 15 C -0.012 4.012 16 C -0.173 4.173 17 C -0.191 4.191 18 C -0.096 4.096 19 N -0.230 5.230 20 C -0.091 4.091 21 C -0.170 4.170 22 C -0.167 4.167 23 H 0.080 0.920 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.235 0.765 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.432 -17.918 0.093 25.706 hybrid contribution -0.700 -1.344 -0.530 1.606 sum 17.732 -19.262 -0.438 26.185 Atomic orbital electron populations 1.69943 1.05928 1.27705 1.48288 1.24712 0.94440 0.98954 0.93217 0.86732 0.81937 0.83264 0.79902 1.19242 1.19993 1.15883 1.22339 0.88399 0.97509 1.58543 0.89432 1.84760 1.09097 1.00363 1.97410 1.23264 0.94318 1.04078 1.05656 1.20239 0.90465 0.82404 0.75428 1.90685 1.58785 1.42315 1.48313 1.45779 1.07381 1.07744 1.76807 1.21119 0.82041 0.92336 1.01900 1.22625 0.93398 0.94391 0.90796 1.23045 1.01690 0.96147 0.96380 1.23229 1.00736 0.96960 0.98162 1.23295 0.97235 0.95741 0.93292 1.65109 1.15425 1.22701 1.19737 1.23170 0.91166 0.95669 0.99093 1.22740 0.97160 1.00684 0.96411 1.22813 0.94851 1.02036 0.97002 0.91995 0.88740 0.88542 0.76513 0.91658 0.91295 0.90062 0.90741 0.91410 0.90507 0.90912 0.89870 0.90109 0.93379 0.90401 0.90811 0.90880 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.95 13.97 55.49 0.78 -26.18 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.12 27.74 -169.99 -4.71 17.40 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 7 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 10 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 11 C 0.53 9.87 7.85 -10.99 -0.09 9.78 16 12 O -0.53 -11.78 15.86 5.56 0.09 -11.69 16 13 N -0.72 -10.05 4.89 -60.30 -0.30 -10.35 16 14 C 0.15 1.83 4.72 -4.04 -0.02 1.81 16 15 C 0.08 0.70 0.65 -129.80 -0.08 0.61 16 16 C -0.13 -1.08 5.74 -24.58 -0.14 -1.22 16 17 C -0.15 -1.04 7.05 -24.20 -0.17 -1.21 16 18 C 0.03 0.25 6.19 -2.27 -0.01 0.24 16 19 N -0.51 -4.58 4.87 -212.72 -1.04 -5.61 16 20 C 0.04 0.28 6.50 -2.30 -0.01 0.27 16 21 C -0.13 -0.93 7.08 -24.61 -0.17 -1.10 16 22 C -0.13 -0.94 5.95 -24.96 -0.15 -1.09 16 23 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 25 H 0.10 1.84 8.14 -51.91 -0.42 1.41 16 26 H 0.40 4.81 7.10 -40.82 -0.29 4.52 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.75 7.40 -51.93 -0.38 0.36 16 30 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 34 H 0.08 0.66 7.68 -51.93 -0.40 0.27 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.32 7.53 -51.92 -0.39 -0.07 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.47 7.64 -51.93 -0.40 0.08 16 40 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -33.72 330.30 -9.06 -42.77 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.44 Total: 0.76 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.42 Total: -6.38 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.56 Total: -42.13 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.72 -9.06 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619574056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.138 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds