Wall clock time and date at job start Tue Mar 31 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47314 * 240.00411 * 3 2 1 5 5 H 1.48493 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47267 * 120.00152 * 3 2 1 7 7 C 1.38948 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00600 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99937 * 180.28109 * 9 7 2 11 11 O 1.21292 * 119.99811 * 359.72112 * 10 9 7 12 12 C 1.50698 * 119.99740 * 179.72597 * 10 9 7 13 13 N 1.46909 * 109.46833 * 180.02562 * 12 10 9 14 14 C 1.46853 * 110.99392 * 288.27701 * 13 12 10 15 15 C 1.53040 * 109.51675 * 174.16166 * 14 13 12 16 16 C 1.53115 * 109.27876 * 59.18015 * 15 14 13 17 17 C 1.53117 * 109.16229 * 302.34497 * 16 15 14 18 18 C 1.46844 * 110.99925 * 164.06880 * 13 12 10 19 19 H 1.09002 * 109.46338 * 65.82108 * 18 13 12 20 20 C 1.53002 * 109.46470 * 305.85451 * 18 13 12 21 21 O 1.43753 * 109.62689 * 305.05187 * 20 18 13 22 22 C 1.44779 * 104.81438 * 215.80485 * 21 20 18 23 23 C 1.54916 * 101.71945 * 36.10675 * 22 21 20 24 24 O 1.43362 * 109.63376 * 185.68963 * 20 18 13 25 25 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 26 26 H 0.96993 * 120.00368 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47191 * 299.99401 * 12 10 9 28 28 H 1.08998 * 109.47366 * 59.99852 * 12 10 9 29 29 H 1.09000 * 109.46487 * 294.17775 * 14 13 12 30 30 H 1.08994 * 109.46501 * 54.14919 * 14 13 12 31 31 H 1.08996 * 109.50545 * 299.23812 * 15 14 13 32 32 H 1.09001 * 109.52760 * 179.13690 * 15 14 13 33 33 H 1.08999 * 109.52231 * 182.43712 * 16 15 14 34 34 H 1.09008 * 109.52742 * 62.24738 * 16 15 14 35 35 H 1.09004 * 109.50335 * 297.71361 * 17 16 15 36 36 H 1.09000 * 109.50324 * 177.59750 * 17 16 15 37 37 H 1.09002 * 109.62642 * 65.29226 * 20 18 13 38 38 H 1.08998 * 110.98216 * 277.99714 * 22 21 20 39 39 H 1.09004 * 110.97593 * 154.21329 * 22 21 20 40 40 H 1.09007 * 110.69445 * 206.03842 * 23 22 21 41 41 H 1.09000 * 110.84556 * 82.90586 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 0.0047 11 8 3.2102 -3.5578 0.0042 12 6 1.2438 -4.8629 0.0109 13 7 2.1985 -5.9795 0.0164 14 6 2.8673 -6.1063 -1.2848 15 6 3.9541 -7.1803 -1.1985 16 6 3.3164 -8.5139 -0.7993 17 6 2.5855 -8.3420 0.5351 18 6 1.5385 -7.2343 0.3987 19 1 0.8141 -7.5116 -0.3671 20 6 0.8192 -7.0452 1.7358 21 8 1.7494 -6.5647 2.7208 22 6 1.3408 -7.1990 3.9564 23 6 0.8815 -8.5921 3.4581 24 8 0.2860 -8.3005 2.1777 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6175 -4.9166 0.9014 28 1 0.6169 -4.9248 -0.8786 29 1 2.1368 -6.3889 -2.0427 30 1 3.3202 -5.1523 -1.5549 31 1 4.6925 -6.8917 -0.4505 32 1 4.4404 -7.2853 -2.1684 33 1 4.0926 -9.2719 -0.6945 34 1 2.6061 -8.8222 -1.5666 35 1 3.3024 -8.0716 1.3105 36 1 2.0935 -9.2768 0.8036 37 1 0.0098 -6.3248 1.6175 38 1 0.5149 -6.6580 4.4184 39 1 2.1806 -7.2884 4.6455 40 1 0.1442 -9.0204 4.1373 41 1 1.7328 -9.2630 3.3432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731212353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:55 Heat of formation + Delta-G solvation = -139.326213 kcal Electronic energy + Delta-G solvation = -23832.231873 eV Core-core repulsion = 20325.378452 eV Total energy + Delta-G solvation = -3506.853421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72768 -40.33476 -38.99351 -35.99770 -35.92331 -34.49711 -33.21265 -32.75136 -30.22777 -28.99347 -26.61645 -26.10331 -24.19533 -24.04185 -22.36930 -21.00711 -20.59076 -19.86191 -18.51297 -17.70200 -17.59823 -16.97946 -16.68865 -16.43218 -16.22589 -15.71401 -15.47798 -15.28077 -15.00326 -14.75959 -14.42510 -14.11657 -13.97754 -13.79119 -13.59820 -13.45980 -13.16433 -13.02629 -12.73964 -12.42243 -12.39200 -12.12367 -12.07878 -11.70669 -11.62412 -11.51979 -11.27947 -11.09087 -10.45540 -10.23457 -9.98537 -9.15940 -8.44550 -5.93212 1.40247 1.41253 1.52541 2.07468 2.24472 2.36330 2.87925 2.96837 3.21494 3.40155 3.68101 3.73569 3.79325 3.96954 4.05865 4.14659 4.21903 4.30001 4.34797 4.36237 4.42993 4.48871 4.56266 4.57824 4.66827 4.76859 4.90611 4.93081 4.99832 5.03577 5.08313 5.24117 5.31471 5.41769 5.49418 5.88782 6.04768 6.11824 6.29149 6.63071 7.14959 7.58224 8.14996 8.72958 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.004620 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.824156 B = 6058.903312 C = 6908.368029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.447 3.553 11 O -0.610 6.610 12 C 0.053 3.947 13 N -0.515 5.515 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.098 4.098 18 C 0.074 3.926 19 H 0.062 0.938 20 C 0.236 3.764 21 O -0.380 6.380 22 C 0.002 3.998 23 C 0.022 3.978 24 O -0.391 6.391 25 H 0.277 0.723 26 H 0.394 0.606 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -19.247 3.934 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.215 5.215 10 C 0.234 3.766 11 O -0.496 6.496 12 C -0.078 4.078 13 N -0.241 5.241 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.135 4.135 18 C -0.034 4.034 19 H 0.080 0.920 20 C 0.141 3.859 21 O -0.300 6.300 22 C -0.074 4.074 23 C -0.053 4.053 24 O -0.312 6.312 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.146 -18.982 4.136 19.428 hybrid contribution -0.824 1.154 -0.418 1.478 sum -0.970 -17.828 3.718 18.237 Atomic orbital electron populations 1.69669 1.06833 1.29274 1.50577 1.26020 0.96537 1.02323 0.96367 0.84993 0.77756 0.76685 0.78911 1.19677 1.19393 1.19828 1.19608 0.92623 0.83985 1.49862 0.90438 1.41918 1.09174 1.04680 1.65684 1.20641 0.88275 0.85690 0.81979 1.90470 1.15607 1.87740 1.55762 1.21792 0.93864 0.89479 1.02698 1.61329 1.29448 1.02164 1.31159 1.22118 0.96655 0.99899 0.88215 1.21522 0.97075 0.94334 1.01783 1.21563 1.00055 0.96612 0.96723 1.21452 0.96986 0.96628 0.98461 1.22090 0.96154 0.90454 0.94720 0.92036 1.24054 0.88813 0.83703 0.89368 1.89472 1.53403 1.68611 1.18505 1.24671 1.02493 0.92070 0.88136 1.24406 1.00097 0.96989 0.83840 1.88827 1.66729 1.38383 1.37245 0.91349 0.77221 0.88184 0.91592 0.94450 0.92720 0.93038 0.90160 0.89937 0.91175 0.92374 0.89742 0.90506 0.90198 0.85857 0.85639 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.98 13.05 21.66 0.28 -50.69 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.99 29.55 68.60 2.03 46.02 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.33 -19.43 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.58 -31.01 5.29 -306.98 -1.62 -32.63 16 10 C 0.45 22.64 7.47 87.66 0.65 23.30 16 11 O -0.61 -35.49 14.41 -3.07 -0.04 -35.54 16 12 C 0.05 2.03 5.26 85.55 0.45 2.48 16 13 N -0.51 -18.36 3.90 -875.63 -3.41 -21.77 16 14 C 0.06 1.99 5.11 86.33 0.44 2.43 16 15 C -0.11 -3.01 6.09 30.65 0.19 -2.83 16 16 C -0.11 -2.42 6.00 30.67 0.18 -2.24 16 17 C -0.10 -2.36 5.05 30.64 0.15 -2.20 16 18 C 0.07 2.10 2.02 44.94 0.09 2.19 16 19 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 20 C 0.24 6.53 3.04 71.98 0.22 6.75 16 21 O -0.38 -11.69 10.66 -126.22 -1.35 -13.04 16 22 C 0.00 0.04 7.95 72.64 0.58 0.62 16 23 C 0.02 0.36 8.07 72.64 0.59 0.95 16 24 O -0.39 -9.08 10.34 -126.22 -1.30 -10.39 16 25 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.39 20.18 7.90 -92.71 -0.73 19.45 16 27 H 0.10 3.58 5.51 -2.39 -0.01 3.57 16 28 H 0.07 2.27 8.06 -2.39 -0.02 2.25 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 2.30 6.33 -2.39 -0.02 2.28 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.62 7.82 -2.38 -0.02 1.60 16 36 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 37 H 0.08 2.18 6.32 -2.39 -0.02 2.17 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.82 326.15 -0.29 -72.11 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.30 Total: 33.35 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 4.83 Total: 12.59 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.75 Total: -105.10 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -2.69 Total: -58.97 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.82 -0.29 -72.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.216 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds