Wall clock time and date at job start Tue Mar 31 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48501 * 109.46807 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99502 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 H 1.09000 * 109.47655 * 34.72745 * 14 13 11 16 16 C 1.52997 * 109.47036 * 274.72131 * 14 13 11 17 17 C 1.52995 * 109.51777 * 179.85851 * 16 14 13 18 18 C 1.53022 * 109.47230 * 60.13365 * 17 16 14 19 19 C 1.52950 * 109.43510 * 300.23147 * 18 17 16 20 20 C 1.52953 * 109.82576 * 59.68432 * 19 18 17 21 21 O 1.43704 * 109.41451 * 299.58598 * 19 18 17 22 22 C 1.44799 * 104.79322 * 215.85177 * 21 19 18 23 23 C 1.54907 * 101.72688 * 36.06618 * 22 21 19 24 24 O 1.43298 * 109.67543 * 180.25009 * 19 18 17 25 25 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 27 27 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 28 28 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.08999 * 109.46774 * 299.86803 * 16 14 13 31 31 H 1.08995 * 109.46665 * 59.84522 * 16 14 13 32 32 H 1.08994 * 109.47511 * 180.13969 * 17 16 14 33 33 H 1.09005 * 109.46716 * 300.13849 * 17 16 14 34 34 H 1.09007 * 109.47354 * 60.21233 * 18 17 16 35 35 H 1.08999 * 109.47967 * 180.22712 * 18 17 16 36 36 H 1.08993 * 109.48419 * 180.31134 * 20 19 18 37 37 H 1.09008 * 109.47823 * 60.28442 * 20 19 18 38 38 H 1.09007 * 110.97498 * 277.95468 * 22 21 19 39 39 H 1.08998 * 111.00847 * 154.19372 * 22 21 19 40 40 H 1.09002 * 110.69692 * 206.07994 * 23 22 21 41 41 H 1.09004 * 110.69419 * 82.87852 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 1 1.2258 -7.3485 -0.5931 16 6 1.8536 -7.7341 1.4313 17 6 1.3400 -9.1753 1.4263 18 6 2.4007 -10.0927 0.8141 19 6 2.6944 -9.6457 -0.6189 20 6 3.2032 -8.2033 -0.6184 21 8 1.4914 -9.7273 -1.4007 22 6 1.9323 -10.1467 -2.7147 23 6 3.0903 -11.1141 -2.3644 24 8 3.6832 -10.5052 -1.1993 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.1566 -3.4356 0.0009 29 1 3.5831 -5.7306 0.0012 30 1 2.7694 -7.6770 2.0196 31 1 1.0990 -7.0813 1.8698 32 1 1.1332 -9.4909 2.4489 33 1 0.4254 -9.2330 0.8362 34 1 3.3143 -10.0378 1.4063 35 1 2.0334 -11.1189 0.8068 36 1 3.4053 -7.8887 -1.6421 37 1 4.1196 -8.1413 -0.0313 38 1 2.2948 -9.2975 -3.2941 39 1 1.1359 -10.6675 -3.2463 40 1 3.8103 -11.1647 -3.1812 41 1 2.7052 -12.1058 -2.1270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:35 Heat of formation + Delta-G solvation = -132.871518 kcal Electronic energy + Delta-G solvation = -23019.968264 eV Core-core repulsion = 19513.394740 eV Total energy + Delta-G solvation = -3506.573524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13685 -39.26091 -37.08804 -35.21278 -34.12690 -33.57937 -32.22828 -30.79759 -29.61814 -28.01726 -26.82603 -23.65687 -23.03998 -22.54938 -21.76890 -20.08848 -19.88459 -18.04048 -17.37320 -16.98863 -16.21530 -15.75600 -15.53123 -15.10429 -14.79549 -14.60535 -14.35058 -14.10710 -13.58620 -13.55851 -13.29487 -12.98150 -12.94186 -12.59857 -12.47308 -11.91743 -11.87435 -11.75821 -11.37432 -11.09497 -10.94441 -10.84956 -10.75551 -10.55122 -10.44779 -10.26808 -9.79700 -9.34995 -9.29015 -8.71792 -8.62744 -7.70989 -6.12108 -4.18609 3.03243 3.27820 3.31916 3.33550 3.43845 3.71299 4.01156 4.26387 4.35135 4.47649 4.56602 4.66104 4.82174 4.88414 4.99048 5.08904 5.15981 5.23203 5.23714 5.27683 5.33621 5.36072 5.50545 5.60546 5.68674 5.76940 5.90063 6.09241 6.09998 6.32636 6.39860 6.85486 6.97197 7.18501 7.56665 7.60098 7.61750 7.96074 8.09261 8.80529 9.00508 9.38815 9.53249 10.98158 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.003090 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.237813 B = 9058.671618 C = 9250.932326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.731 5.731 11 C 0.693 3.307 12 O -0.599 6.599 13 N -0.754 5.754 14 C 0.174 3.826 15 H 0.094 0.906 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.118 4.118 19 C 0.264 3.736 20 C -0.143 4.143 21 O -0.362 6.362 22 C 0.013 3.987 23 C 0.021 3.979 24 O -0.379 6.379 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.389 0.611 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 -22.852 -2.454 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.393 3.607 12 O -0.478 6.478 13 N -0.410 5.410 14 C 0.068 3.932 15 H 0.112 0.888 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.156 4.156 19 C 0.187 3.813 20 C -0.182 4.182 21 O -0.282 6.282 22 C -0.064 4.064 23 C -0.056 4.056 24 O -0.300 6.300 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.222 0.778 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.086 -22.841 -2.299 24.025 hybrid contribution 1.414 1.092 -0.237 1.802 sum 8.500 -21.748 -2.535 23.488 Atomic orbital electron populations 1.69975 1.06081 1.27334 1.48938 1.24946 0.94913 0.99369 0.94808 0.86473 0.79394 0.82366 0.78637 1.20116 1.21091 1.20102 1.21202 0.93220 0.90501 1.53122 0.92033 1.18959 0.87783 0.81059 0.97561 1.45720 1.10713 1.04462 1.77370 1.16154 0.85260 0.81020 0.78264 1.90872 1.14189 1.84176 1.58544 1.45220 1.08677 1.04912 1.82199 1.20486 0.97193 0.79377 0.96113 0.88762 1.22008 1.01821 0.96196 0.97179 1.21421 0.98541 0.94080 1.00989 1.21859 1.00646 1.00286 0.92808 1.23216 0.77040 0.89744 0.91332 1.22359 0.99645 0.93469 1.02737 1.89324 1.28588 1.89036 1.21243 1.24396 0.97627 0.97626 0.86715 1.24193 0.95779 0.97193 0.88414 1.88881 1.37722 1.61088 1.42287 0.92431 0.95804 0.95776 0.78248 0.77780 0.91992 0.90585 0.91208 0.90733 0.90030 0.90887 0.90682 0.89855 0.90531 0.87314 0.88345 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 10 N -0.73 -16.03 5.55 -66.41 -0.37 -16.40 16 11 C 0.69 14.73 8.53 -86.92 -0.74 13.98 16 12 O -0.60 -15.34 16.00 5.28 0.08 -15.26 16 13 N -0.75 -11.74 5.08 -58.67 -0.30 -12.04 16 14 C 0.17 2.47 2.31 -67.92 -0.16 2.31 16 15 H 0.09 1.63 7.12 -51.93 -0.37 1.26 16 16 C -0.13 -1.74 5.49 -26.74 -0.15 -1.89 16 17 C -0.11 -1.24 5.78 -26.72 -0.15 -1.39 16 18 C -0.12 -1.18 5.34 -26.75 -0.14 -1.32 16 19 C 0.26 2.89 1.03 -26.78 -0.03 2.86 16 20 C -0.14 -1.62 4.75 -26.74 -0.13 -1.75 16 21 O -0.36 -4.24 9.67 -59.04 -0.57 -4.81 16 22 C 0.01 0.11 7.91 38.16 0.30 0.41 16 23 C 0.02 0.15 8.07 38.16 0.31 0.46 16 24 O -0.38 -3.98 10.87 -59.04 -0.64 -4.62 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.22 8.34 -40.82 -0.34 6.88 16 29 H 0.39 4.86 8.62 -40.82 -0.35 4.51 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -34.15 334.22 -8.87 -43.01 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.49 Total: 7.43 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.33 Total: 7.34 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.07 Total: -54.19 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.13 Total: -24.69 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.15 -8.87 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.859 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds