Wall clock time and date at job start Tue Mar 31 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 C 1.52997 * 109.47466 * 239.99568 * 2 1 3 5 5 C 1.50698 * 109.46722 * 59.99767 * 4 2 1 6 6 H 1.08000 * 120.00349 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99885 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00203 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46932 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47256 * 119.99940 * 9 7 5 12 12 H 1.48496 * 109.47385 * 240.00209 * 9 7 5 13 13 C 1.53007 * 109.47232 * 119.99452 * 2 1 3 14 14 N 1.46500 * 109.47207 * 300.00284 * 13 2 1 15 15 C 1.34773 * 120.00182 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99923 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00286 * 179.97438 * 15 14 13 18 18 H 1.09002 * 109.39808 * 320.00294 * 17 15 14 19 19 C 1.53137 * 109.32241 * 79.77952 * 17 15 14 20 20 C 1.53476 * 108.36217 * 168.06818 * 19 17 15 21 21 O 1.45432 * 108.11071 * 298.26859 * 20 19 17 22 22 C 1.34210 * 117.18248 * 46.44577 * 21 20 19 23 23 O 1.21509 * 118.45657 * 163.22980 * 22 21 20 24 24 N 1.33728 * 123.07624 * 343.20056 * 22 21 20 25 25 H 1.09002 * 109.47202 * 300.00166 * 1 2 3 26 26 H 1.08995 * 109.47395 * 60.00546 * 1 2 3 27 27 H 1.09002 * 109.46747 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47079 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47136 * 299.99443 * 3 2 1 30 30 H 1.08994 * 109.47584 * 60.00130 * 3 2 1 31 31 H 1.08991 * 109.47283 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.46725 * 300.00194 * 4 2 1 33 33 H 0.97003 * 119.99857 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46919 * 180.02562 * 13 2 1 35 35 H 1.09002 * 109.47084 * 60.00415 * 13 2 1 36 36 H 0.96999 * 119.99983 * 0.02562 * 14 13 2 37 37 H 1.09003 * 109.68172 * 287.78871 * 19 17 15 38 38 H 1.08993 * 109.68589 * 48.34808 * 19 17 15 39 39 H 1.09003 * 109.73610 * 178.61140 * 20 19 17 40 40 H 1.09005 * 109.77327 * 57.94853 * 20 19 17 41 41 H 0.97005 * 118.51658 * 182.26977 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8525 9 14 1.2483 0.3984 -5.2572 10 1 0.4246 1.5662 -4.8531 11 1 2.4036 0.8642 -6.0656 12 1 0.4226 -0.5344 -6.0654 13 6 2.0401 -0.7212 1.2494 14 7 1.5517 -0.0305 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5742 -1.4772 3.7810 17 6 1.3750 0.2197 4.9000 18 1 1.4234 1.2969 4.7409 19 6 -0.0763 -0.1906 5.1656 20 6 -0.4680 0.2976 6.5670 21 8 0.3994 -0.3580 7.5329 22 6 1.7134 -0.3808 7.2605 23 8 2.4874 -0.6328 8.1627 24 7 2.2106 -0.1399 6.0427 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7489 -1.2490 33 1 2.8595 -1.8841 -4.7335 34 1 3.1300 -0.7207 1.2495 35 1 1.6768 -1.7489 1.2494 36 1 0.9937 0.7579 2.3564 37 1 -0.7290 0.2664 4.4218 38 1 -0.1660 -1.2757 5.1164 39 1 -1.5071 0.0384 6.7700 40 1 -0.3392 1.3781 6.6305 41 1 3.1696 -0.2066 5.9125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861729804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:40 Heat of formation + Delta-G solvation = -131.764347 kcal Electronic energy + Delta-G solvation = -22810.020898 eV Core-core repulsion = 19303.495384 eV Total energy + Delta-G solvation = -3506.525514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46633 -39.74588 -37.48941 -37.32228 -35.57983 -33.88800 -32.32407 -31.82716 -28.19322 -27.12469 -26.65442 -25.86482 -24.42261 -22.97691 -20.84664 -20.43683 -18.84476 -18.65674 -17.76976 -17.38262 -16.43787 -16.31031 -15.62089 -15.42274 -15.08913 -14.90466 -14.57672 -14.39798 -14.01409 -13.59782 -13.26481 -12.90428 -12.81841 -12.55187 -12.26439 -12.15480 -12.00976 -11.29811 -11.12326 -11.09221 -10.92885 -10.83833 -10.75849 -10.54081 -10.35016 -10.22304 -10.01205 -9.58708 -9.26255 -9.01576 -9.00157 -8.44200 -6.07894 -4.09753 2.17974 2.38652 2.49408 2.99005 3.20715 3.24373 3.33016 3.34448 3.93100 4.10680 4.32171 4.38005 4.46914 4.64746 4.74871 4.96833 5.27629 5.31377 5.35165 5.47051 5.53213 5.59484 6.00387 6.05551 6.11361 6.22994 6.32138 6.46654 6.49776 6.57696 6.92202 6.94790 6.99214 7.28896 7.41636 7.54538 7.65386 7.83380 7.90073 8.06116 8.31241 8.95236 9.54046 11.03505 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.003036 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.211706 B = 9220.503489 C = 9516.852552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.712 5.712 15 C 0.498 3.502 16 O -0.527 6.527 17 C 0.117 3.883 18 H 0.105 0.895 19 C -0.167 4.167 20 C 0.063 3.937 21 O -0.342 6.342 22 C 0.663 3.337 23 O -0.532 6.532 24 N -0.710 5.710 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 7.713 15.700 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.281 3.719 16 O -0.403 6.403 17 C 0.008 3.992 18 H 0.123 0.877 19 C -0.206 4.206 20 C -0.012 4.012 21 O -0.254 6.254 22 C 0.416 3.584 23 O -0.417 6.417 24 N -0.378 5.378 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -7.198 6.680 16.348 19.071 hybrid contribution -0.208 0.796 -1.497 1.708 sum -7.406 7.475 14.851 18.201 Atomic orbital electron populations 1.21768 0.95182 1.01217 1.00275 1.20924 0.95532 0.95902 0.94970 1.21771 1.00636 0.95788 1.00287 1.19092 0.96405 0.95239 0.89437 1.21197 1.31329 1.12117 0.90468 0.92182 1.25019 0.95259 0.95056 0.99147 1.69969 1.36880 1.22959 1.23450 0.86591 0.78632 0.79666 0.83417 1.19792 1.21102 1.21100 1.21725 0.99155 0.96123 0.82571 1.46178 1.52746 1.31873 1.05635 1.20458 0.81538 0.85268 0.84684 1.90777 1.37461 1.25618 1.86453 1.21082 0.91713 1.00363 0.86064 0.87740 1.22547 0.94165 1.04902 0.98940 1.23506 0.94616 0.97286 0.85755 1.86730 1.16577 1.73712 1.48368 1.17745 0.81536 0.76525 0.82630 1.91051 1.52543 1.53601 1.44490 1.45099 1.12236 1.73475 1.07006 0.95321 0.91293 0.93300 0.93289 0.91296 0.95297 0.96315 0.96317 0.93012 0.91488 0.91522 0.76455 0.86875 0.88600 0.86095 0.89936 0.73567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.05 37.16 0.30 -1.64 16 2 C -0.07 -1.23 0.54 -154.51 -0.08 -1.31 16 3 C -0.13 -1.97 8.05 37.16 0.30 -1.67 16 4 C 0.04 0.82 4.04 -27.89 -0.11 0.71 16 5 C -0.51 -12.94 7.65 -34.44 -0.26 -13.20 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.13 1.94 4.56 -4.04 -0.02 1.93 16 14 N -0.71 -7.98 4.96 -60.29 -0.30 -8.28 16 15 C 0.50 5.83 6.98 -10.99 -0.08 5.75 16 16 O -0.53 -8.67 16.40 5.55 0.09 -8.58 16 17 C 0.12 0.92 3.54 -69.25 -0.24 0.68 16 18 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.17 -0.97 5.56 -26.41 -0.15 -1.11 16 20 C 0.06 0.34 7.20 37.40 0.27 0.61 16 21 O -0.34 -3.70 10.50 -39.27 -0.41 -4.11 16 22 C 0.66 8.51 8.55 53.59 0.46 8.97 16 23 O -0.53 -8.98 17.95 -19.41 -0.35 -9.33 16 24 N -0.71 -7.44 4.85 -60.48 -0.29 -7.73 16 25 H 0.03 0.32 6.86 -51.93 -0.36 -0.03 16 26 H 0.07 1.17 6.62 -51.93 -0.34 0.82 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.18 6.62 -51.93 -0.34 0.83 16 30 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.40 3.39 6.16 -40.82 -0.25 3.13 16 37 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.42 4.63 8.52 -40.82 -0.35 4.28 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -33.82 334.12 -6.31 -40.13 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.08 Total: 1.19 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.28 Total: 1.12 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.14 Total: -40.88 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.67 Total: -22.02 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.82 -6.31 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861729804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.634 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds