Wall clock time and date at job start Tue Mar 31 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48522 * 111.00054 * 2 1 4 4 C 1.54306 * 104.69133 * 200.77060 * 3 2 1 5 5 H 1.09000 * 112.04636 * 260.95186 * 4 3 2 6 6 C 1.53758 * 109.08164 * 136.30199 * 4 3 2 7 7 N 1.47203 * 106.40308 * 229.09570 * 6 4 3 8 8 C 1.34775 * 126.70205 * 211.28454 * 7 6 4 9 9 O 1.21276 * 119.99984 * 180.02562 * 8 7 6 10 10 C 1.50698 * 120.00022 * 0.02993 * 8 7 6 11 11 S 1.80998 * 109.47116 * 179.97438 * 10 8 7 12 12 C 1.76199 * 100.00013 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00250 * 0.02562 * 12 11 10 14 14 C 1.38798 * 120.00102 * 179.72368 * 12 11 10 15 15 N 1.31626 * 120.00155 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00292 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47210 * 89.99890 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00121 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00210 * 16 14 12 20 20 C 1.47207 * 106.59563 * 31.55102 * 7 6 4 21 21 C 1.54041 * 106.25670 * 328.37525 * 20 7 6 22 22 C 1.53004 * 113.02912 * 256.35354 * 21 20 7 23 23 C 1.48522 * 110.99713 * 244.59713 * 2 1 3 24 24 H 1.09000 * 109.46849 * 59.87044 * 1 2 3 25 25 H 1.09002 * 109.47450 * 179.87362 * 1 2 3 26 26 H 1.08998 * 109.47184 * 299.87767 * 1 2 3 27 27 H 1.09005 * 110.38944 * 81.96949 * 3 2 1 28 28 H 1.09000 * 110.39298 * 319.57612 * 3 2 1 29 29 H 1.08999 * 110.06809 * 109.86222 * 6 4 3 30 30 H 1.09001 * 110.07133 * 348.33446 * 6 4 3 31 31 H 1.09001 * 109.47434 * 59.99478 * 10 8 7 32 32 H 1.08999 * 109.47072 * 299.99957 * 10 8 7 33 33 H 0.97004 * 120.00604 * 179.97438 * 15 14 12 34 34 H 1.09003 * 110.06666 * 87.68532 * 20 7 6 35 35 H 1.08997 * 110.06684 * 209.21495 * 20 7 6 36 36 H 1.08994 * 109.47245 * 178.79005 * 22 21 20 37 37 H 1.08997 * 109.47365 * 298.78854 * 22 21 20 38 38 H 1.09001 * 109.47125 * 58.78782 * 22 21 20 39 39 H 1.09001 * 110.39377 * 278.03188 * 23 2 1 40 40 H 1.09000 * 110.39596 * 40.42811 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4445 1.2518 -0.5293 5 1 4.1773 1.2462 0.2775 6 6 3.7138 2.3734 -1.5459 7 7 4.2978 1.7274 -2.7327 8 6 5.1920 2.2663 -3.5851 9 8 5.5942 1.6210 -4.5299 10 6 5.6919 3.6706 -3.3643 11 16 6.8730 4.1023 -4.6661 12 6 7.2824 5.7444 -4.1756 13 1 6.8268 6.1747 -3.2961 14 6 8.1952 6.4827 -4.9160 15 7 8.7547 5.9563 -5.9849 16 14 8.6287 8.2238 -4.3965 17 1 9.7866 8.1893 -3.4673 18 1 8.9804 9.0254 -5.5961 19 1 7.4637 8.8409 -3.7128 20 6 3.7096 0.3802 -2.8103 21 6 3.4444 -0.0588 -1.3578 22 6 4.4711 -1.0685 -0.8407 23 6 2.0012 -0.5948 -1.2525 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3634 -1.0277 -0.0023 26 1 -0.3633 0.5119 0.8911 27 1 2.0042 1.7923 1.0117 28 1 1.4113 2.0199 -0.6625 29 1 4.4164 3.0951 -1.1291 30 1 2.7804 2.8698 -1.8114 31 1 6.1832 3.7330 -2.3932 32 1 4.8514 4.3640 -3.3913 33 1 9.3923 6.4724 -6.5026 34 1 2.7752 0.4118 -3.3707 35 1 4.4092 -0.3064 -3.2869 36 1 4.2421 -1.3220 0.1943 37 1 4.4341 -1.9700 -1.4522 38 1 5.4688 -0.6328 -0.8958 39 1 2.0041 -1.6827 -1.1851 40 1 1.4113 -0.2680 -2.1088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887936516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:45 Heat of formation + Delta-G solvation = -48.596512 kcal Electronic energy + Delta-G solvation = -20455.377348 eV Core-core repulsion = 17395.211133 eV Total energy + Delta-G solvation = -3060.166215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84227 -39.92962 -36.95854 -34.60137 -33.97178 -32.12476 -31.06078 -28.11881 -27.77025 -27.13031 -26.90967 -23.76976 -22.24083 -20.72520 -20.27588 -19.46196 -18.13783 -17.19325 -16.89826 -16.70166 -16.56144 -16.02477 -15.81994 -15.47794 -15.13666 -14.59871 -14.49389 -14.28768 -13.90045 -13.72399 -13.48810 -13.39305 -13.16639 -12.91543 -12.87739 -12.71311 -12.61262 -12.35440 -12.12799 -11.84198 -11.71346 -11.69718 -11.57950 -11.15392 -10.99040 -10.30736 -9.82037 -9.45121 -8.70204 -8.35848 -6.15091 1.21477 1.42383 1.43723 1.50023 1.55541 2.03997 2.25952 2.98348 3.01467 3.13506 3.31711 3.43945 3.67844 3.85851 3.98627 4.10474 4.11365 4.20147 4.24735 4.40432 4.48575 4.52151 4.61374 4.63883 4.67032 4.71420 4.76944 4.85534 4.96150 5.04700 5.05964 5.09795 5.16374 5.29739 5.36567 5.40341 5.80502 6.04287 6.18458 6.35445 7.04894 7.05514 8.73517 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.033071 B = 0.003467 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.461800 B = 8073.638700 C = 8557.542636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.523 5.523 3 C 0.041 3.959 4 C -0.092 4.092 5 H 0.107 0.893 6 C 0.098 3.902 7 N -0.616 5.616 8 C 0.549 3.451 9 O -0.566 6.566 10 C -0.119 4.119 11 S -0.150 6.150 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.257 1.257 20 C 0.111 3.889 21 C -0.066 4.066 22 C -0.122 4.122 23 C 0.047 3.953 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.272 0.728 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.398 -10.638 16.433 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.246 5.246 3 C -0.087 4.087 4 C -0.111 4.111 5 H 0.125 0.875 6 C -0.025 4.025 7 N -0.350 5.350 8 C 0.338 3.662 9 O -0.445 6.445 10 C -0.270 4.270 11 S 0.077 5.923 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.181 1.181 20 C -0.012 4.012 21 C -0.068 4.068 22 C -0.180 4.180 23 C -0.081 4.081 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.505 -11.836 15.320 25.440 hybrid contribution -0.197 2.048 0.019 2.058 sum -16.701 -9.788 15.339 24.699 Atomic orbital electron populations 1.22559 0.86821 1.02865 1.01376 1.65400 1.09238 1.15377 1.34599 1.23281 0.92792 0.90315 1.02273 1.22768 0.98670 0.92674 0.97018 0.87523 1.22535 0.99454 0.96225 0.84260 1.48478 1.42323 1.16580 1.27599 1.19787 0.77615 0.87665 0.81172 1.90686 1.58540 1.63484 1.31748 1.23298 1.03298 0.95857 1.04594 1.85598 1.52740 1.18318 1.35663 1.23189 1.30755 0.99545 1.15926 0.89856 1.26151 0.94644 1.04016 0.94327 1.70184 1.28078 1.39449 1.17077 0.84930 0.79030 0.75890 0.77977 1.19230 1.20283 1.18091 1.22353 0.98134 0.83409 0.97295 1.22023 0.96558 0.95791 0.92404 1.21627 0.96741 0.97607 1.01996 1.23269 0.92414 1.01007 0.91439 0.95217 0.90578 0.90351 0.88464 0.92821 0.89451 0.89800 0.87465 0.87552 0.91941 0.90805 0.91744 0.90514 0.91711 0.93759 0.88877 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.53 127.69 1.22 1.35 16 2 N -0.52 -7.21 5.66 -908.12 -5.14 -12.35 16 3 C 0.04 0.53 6.03 86.43 0.52 1.05 16 4 C -0.09 -1.46 3.69 -9.39 -0.03 -1.49 16 5 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 6 C 0.10 1.95 6.38 86.50 0.55 2.50 16 7 N -0.62 -17.71 3.32 -814.73 -2.70 -20.42 16 8 C 0.55 21.81 7.90 87.66 0.69 22.51 16 9 O -0.57 -27.77 16.09 -3.02 -0.05 -27.82 16 10 C -0.12 -4.94 5.13 71.24 0.37 -4.57 16 11 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 12 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 13 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 14 C 0.01 0.76 5.49 84.86 0.47 1.23 16 15 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 16 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 C 0.11 2.67 6.24 86.60 0.54 3.21 16 21 C -0.07 -1.15 1.08 -50.68 -0.05 -1.21 16 22 C -0.12 -2.07 8.61 71.98 0.62 -1.45 16 23 C 0.05 0.67 5.65 86.43 0.49 1.16 16 24 H 0.03 0.32 7.97 -2.39 -0.02 0.30 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 0.67 6.97 -2.39 -0.02 0.66 16 29 H 0.09 1.68 7.31 -2.39 -0.02 1.66 16 30 H 0.08 1.46 7.10 -2.39 -0.02 1.44 16 31 H 0.11 4.02 7.86 -2.40 -0.02 4.00 16 32 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.07 1.65 7.10 -2.39 -0.02 1.63 16 35 H 0.06 1.80 7.65 -2.39 -0.02 1.78 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.21 7.90 -2.39 -0.02 1.19 16 40 H 0.05 0.73 6.91 -2.39 -0.02 0.71 16 Total: -1.00 -75.24 332.78 0.29 -74.95 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.01 Total: 12.24 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 6.02 Total: -6.50 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -7.55 Total: -88.80 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -75.24 0.29 -74.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887936516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.349 kcal (2) G-P(sol) polarization free energy of solvation -75.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds