Wall clock time and date at job start Tue Mar 31 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00579 * 2 1 4 4 H 1.48503 * 109.46925 * 270.00406 * 3 2 1 5 5 H 1.48508 * 109.46896 * 29.99695 * 3 2 1 6 6 H 1.48495 * 109.47380 * 149.99883 * 3 2 1 7 7 C 1.37876 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99602 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47276 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99934 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00125 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00086 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00344 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47335 * 179.97438 * 15 14 12 17 17 C 1.53846 * 113.60235 * 174.99795 * 16 15 14 18 18 C 1.53387 * 86.96997 * 139.70435 * 17 16 15 19 19 C 1.53387 * 87.47773 * 334.78229 * 18 17 16 20 20 O 1.43325 * 114.59261 * 218.83062 * 18 17 16 21 21 C 1.44885 * 104.67306 * 205.53247 * 20 18 17 22 22 C 1.54947 * 101.79506 * 35.66191 * 21 20 18 23 23 O 1.42943 * 114.81983 * 91.03439 * 18 17 16 24 24 H 0.97003 * 119.99754 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47257 * 60.00356 * 9 7 2 26 26 H 1.09000 * 109.47331 * 299.99891 * 9 7 2 27 27 H 1.09000 * 109.46967 * 59.99807 * 10 9 7 28 28 H 1.09000 * 109.47203 * 300.00400 * 10 9 7 29 29 H 0.96997 * 120.00295 * 0.02562 * 11 10 9 30 30 H 0.97004 * 120.00342 * 359.97438 * 14 12 11 31 31 H 1.08998 * 109.47261 * 59.99917 * 15 14 12 32 32 H 1.09001 * 109.47027 * 299.99691 * 15 14 12 33 33 H 1.08994 * 112.89459 * 43.77798 * 16 15 14 34 34 H 1.09004 * 113.63309 * 25.18978 * 17 16 15 35 35 H 1.08999 * 113.63676 * 254.22285 * 17 16 15 36 36 H 1.09004 * 113.63207 * 139.73356 * 19 18 17 37 37 H 1.09002 * 113.63271 * 270.69498 * 19 18 17 38 38 H 1.08999 * 110.96522 * 277.53325 * 21 20 18 39 39 H 1.09005 * 110.99728 * 153.79976 * 21 20 18 40 40 H 1.09001 * 110.69479 * 206.27730 * 22 21 20 41 41 H 1.08998 * 110.69391 * 83.07832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.4023 -6.0981 0.0007 14 7 1.5125 -7.2651 -0.0008 15 6 2.2449 -8.5340 -0.0009 16 6 1.2505 -9.6969 -0.0016 17 6 1.9177 -11.0777 -0.1247 18 6 0.8980 -11.5722 0.9090 19 6 0.8019 -10.1245 1.4066 20 8 1.4226 -12.4987 1.8684 21 6 0.2743 -13.2697 2.3000 22 6 -0.5490 -13.3711 0.9913 23 8 -0.3108 -12.0976 0.3556 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.5425 -4.9308 -0.0008 30 1 0.5424 -7.2652 -0.0015 31 1 2.8709 -8.5922 0.8895 32 1 2.8721 -8.5913 -0.8905 33 1 0.4242 -9.5478 -0.6965 34 1 2.9473 -11.0990 0.2326 35 1 1.7999 -11.5339 -1.1075 36 1 -0.2132 -9.8142 1.6548 37 1 1.5228 -9.8821 2.1874 38 1 -0.2837 -12.7396 3.0717 39 1 0.5758 -14.2575 2.6485 40 1 -1.6088 -13.4992 1.2119 41 1 -0.1829 -14.1870 0.3681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921909288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:20 Heat of formation + Delta-G solvation = -129.823292 kcal Electronic energy + Delta-G solvation = -21749.569896 eV Core-core repulsion = 18243.128552 eV Total energy + Delta-G solvation = -3506.441343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97274 -40.91836 -38.49386 -36.60666 -36.08021 -35.24094 -34.74985 -31.61235 -30.37545 -28.26340 -26.96100 -26.37073 -24.24114 -23.33341 -22.76184 -21.98707 -20.71719 -19.28805 -18.40513 -18.19539 -17.58758 -17.25673 -16.86421 -16.55321 -16.48092 -16.15905 -15.62038 -15.35594 -15.11677 -14.89730 -14.46740 -14.30063 -14.20308 -13.66730 -13.56205 -13.31886 -13.19922 -12.92148 -12.84738 -12.51279 -12.22663 -12.15640 -11.93773 -11.69270 -11.65920 -11.48208 -11.18576 -11.14995 -10.59544 -10.48677 -10.31609 -9.68477 -8.23014 -6.33104 1.42693 1.43373 1.54797 1.78331 2.18920 2.40631 2.42658 2.76994 3.11749 3.28669 3.47805 3.58898 3.68295 3.74986 3.87775 4.08807 4.15549 4.27559 4.49043 4.53636 4.56846 4.62414 4.70237 4.70826 4.73974 4.79884 4.88348 4.92961 4.97233 5.08495 5.24797 5.33450 5.52672 5.55600 5.61118 5.80446 6.07331 6.14054 6.18705 6.80123 7.15729 7.36104 7.62296 8.88919 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.047915 B = 0.002231 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.229004 B =12547.555213 C =12823.512338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.696 3.304 13 O -0.642 6.642 14 N -0.731 5.731 15 C 0.154 3.846 16 C -0.102 4.102 17 C -0.126 4.126 18 C 0.227 3.773 19 C -0.148 4.148 20 O -0.384 6.384 21 C 0.009 3.991 22 C 0.014 3.986 23 O -0.378 6.378 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.407 0.593 30 H 0.411 0.589 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -29.495 2.709 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.388 5.388 15 C 0.030 3.970 16 C -0.120 4.120 17 C -0.164 4.164 18 C 0.150 3.850 19 C -0.186 4.186 20 O -0.305 6.305 21 C -0.067 4.067 22 C -0.062 4.062 23 O -0.299 6.299 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.242 0.758 30 H 0.247 0.753 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.873 -29.313 2.628 29.570 hybrid contribution -0.645 0.926 0.101 1.133 sum -3.519 -28.386 2.729 28.734 Atomic orbital electron populations 1.70059 1.07515 1.27973 1.51070 1.25880 0.95827 1.03110 0.94459 0.85434 0.78612 0.78413 0.78515 1.19760 1.20502 1.19087 1.21472 0.93618 0.91918 1.51437 0.92295 1.19129 0.94229 0.91638 0.96364 1.21068 0.94629 0.81172 0.99563 1.45212 1.10383 1.04431 1.78811 1.16191 0.85143 0.81328 0.77749 1.90860 1.13819 1.87393 1.60338 1.44946 1.10305 1.03659 1.79871 1.21146 0.93845 0.80287 1.01744 1.22458 0.98680 0.92727 0.98168 1.23451 0.99336 0.93919 0.99677 1.24362 0.84183 0.88854 0.87619 1.23839 1.03580 0.93635 0.97561 1.89210 1.32033 1.50921 1.58345 1.24645 0.86420 0.98512 0.97101 1.24512 1.03086 0.85649 0.92907 1.88801 1.41160 1.35587 1.64384 0.92555 0.97283 0.97271 0.93898 0.93875 0.75761 0.75292 0.92301 0.92062 0.86945 0.87637 0.89034 0.89645 0.88295 0.89852 0.85180 0.85988 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.16 7.12 5.61 86.38 0.48 7.60 16 11 N -0.73 -26.38 5.56 -478.54 -2.66 -29.04 16 12 C 0.70 24.74 8.57 179.06 1.53 26.27 16 13 O -0.64 -28.54 16.34 -4.00 -0.07 -28.60 16 14 N -0.73 -18.07 5.56 -478.52 -2.66 -20.73 16 15 C 0.15 3.34 5.51 86.38 0.48 3.82 16 16 C -0.10 -1.62 3.74 -10.22 -0.04 -1.66 16 17 C -0.13 -1.97 7.38 31.01 0.23 -1.74 16 18 C 0.23 3.81 1.84 30.85 0.06 3.87 16 19 C -0.15 -2.39 7.37 31.01 0.23 -2.16 16 20 O -0.38 -6.71 11.42 -126.23 -1.44 -8.15 16 21 C 0.01 0.09 7.96 72.65 0.58 0.67 16 22 C 0.01 0.13 8.08 72.65 0.59 0.72 16 23 O -0.38 -6.30 11.28 -126.23 -1.42 -7.73 16 24 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.41 12.32 8.49 -92.71 -0.79 11.53 16 30 H 0.41 7.60 8.49 -92.71 -0.79 6.82 16 31 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.63 8.10 -2.38 -0.02 1.61 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.10 1.69 7.90 -2.39 -0.02 1.68 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.96 344.59 -1.49 -74.46 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.54 Total: 19.19 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.98 Total: 8.92 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.04 Total: -104.10 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.93 Total: -44.48 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.96 -1.49 -74.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.365 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds