Wall clock time and date at job start Tue Mar 31 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99681 * 2 1 4 4 H 1.48493 * 109.47064 * 274.45782 * 3 2 1 5 5 H 1.48497 * 109.47165 * 34.45914 * 3 2 1 6 6 H 1.48495 * 109.46735 * 154.45701 * 3 2 1 7 7 C 1.38806 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00241 * 189.01830 * 7 2 1 9 9 N 1.36941 * 119.99526 * 9.01737 * 7 2 1 10 10 C 1.48141 * 127.84030 * 15.58947 * 9 7 2 11 11 C 1.54396 * 104.61501 * 140.41375 * 10 9 7 12 12 H 1.08991 * 118.18566 * 244.20269 * 11 10 9 13 13 C 1.54286 * 104.96050 * 23.87135 * 11 10 9 14 14 H 1.09004 * 123.12994 * 221.63824 * 13 11 10 15 15 C 1.48153 * 127.83279 * 195.59411 * 9 7 2 16 16 C 1.52997 * 59.72389 * 114.13696 * 13 11 10 17 17 H 1.09005 * 117.44139 * 252.39709 * 16 13 11 18 18 N 1.46497 * 117.44563 * 107.64968 * 16 13 11 19 19 C 1.34779 * 120.00023 * 154.99824 * 18 16 13 20 20 O 1.21269 * 120.00282 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99435 * 179.97438 * 19 18 16 22 22 F 1.39905 * 110.75262 * 54.30547 * 21 19 18 23 23 C 1.55313 * 110.84232 * 177.77178 * 21 19 18 24 24 C 1.55502 * 100.69068 * 152.42432 * 23 21 19 25 25 O 1.43645 * 105.18184 * 323.57666 * 24 23 21 26 26 C 1.43239 * 109.97273 * 24.43883 * 25 24 23 27 27 H 0.97001 * 119.99828 * 0.02562 * 1 2 3 28 28 H 1.08996 * 110.40938 * 259.19449 * 10 9 7 29 29 H 1.09001 * 110.41031 * 21.51890 * 10 9 7 30 30 H 1.08995 * 110.40603 * 100.80331 * 15 9 7 31 31 H 1.08996 * 110.50570 * 338.41788 * 15 9 7 32 32 H 0.97004 * 119.99772 * 334.99795 * 18 16 13 33 33 H 1.09002 * 111.12403 * 270.44265 * 23 21 19 34 34 H 1.08999 * 111.12169 * 34.61105 * 23 21 19 35 35 H 1.09003 * 110.28082 * 204.65134 * 24 23 21 36 36 H 1.08996 * 110.37868 * 82.55517 * 24 23 21 37 37 H 1.08997 * 109.83457 * 238.77490 * 26 25 24 38 38 H 1.09002 * 109.83199 * 117.79630 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4034 2.1009 -1.3958 5 1 1.4979 2.6237 0.7922 6 1 3.5916 1.4149 0.6037 7 6 2.0104 -1.2020 0.0005 8 1 3.0803 -1.2077 0.1471 9 7 1.3383 -2.3807 -0.1848 10 6 -0.0348 -2.5716 -0.7069 11 6 0.0623 -3.8187 -1.6120 12 1 -0.1257 -3.6966 -2.6786 13 6 1.2850 -4.5986 -1.0855 14 1 2.0161 -5.0728 -1.7403 15 6 1.8197 -3.7544 0.0914 16 6 -0.1193 -5.1940 -0.9666 17 1 -0.5685 -5.2270 0.0261 18 7 -0.4545 -6.3147 -1.8485 19 6 -1.4137 -7.1909 -1.4898 20 8 -1.9998 -7.0513 -0.4374 21 6 -1.7588 -8.3434 -2.3974 22 9 -0.6160 -9.0872 -2.7107 23 6 -2.8468 -9.2464 -1.7547 24 6 -3.5241 -9.8316 -3.0262 25 8 -3.5131 -8.7617 -3.9846 26 6 -2.4573 -7.8429 -3.6800 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7315 -2.7498 0.1121 29 1 -0.3453 -1.7023 -1.2867 30 1 1.4125 -4.1172 1.0351 31 1 2.9091 -3.7800 0.1135 32 1 0.0140 -6.4262 -2.6905 33 1 -2.3970 -10.0322 -1.1478 34 1 -3.5521 -8.6559 -1.1698 35 1 -4.5486 -10.1308 -2.8049 36 1 -2.9552 -10.6820 -3.4020 37 1 -2.8697 -6.8480 -3.5121 38 1 -1.7430 -7.8143 -4.5029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961590938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:21 Heat of formation + Delta-G solvation = -60.734393 kcal Electronic energy + Delta-G solvation = -22459.967936 eV Core-core repulsion = 18833.062207 eV Total energy + Delta-G solvation = -3626.905729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.34955 -40.28299 -39.15143 -38.23257 -34.68481 -32.84913 -32.12548 -30.49586 -29.58189 -27.22500 -25.84532 -24.15855 -23.02862 -21.63661 -20.67474 -20.18401 -19.37547 -18.25396 -17.42373 -16.93585 -16.65679 -16.05104 -15.69881 -15.16989 -14.93249 -14.82624 -14.65446 -14.02255 -13.73777 -13.46403 -13.34389 -12.82401 -12.58845 -12.33956 -12.17231 -11.97430 -11.68196 -11.58205 -11.29049 -11.04233 -10.87102 -10.50737 -10.30115 -10.21010 -10.10493 -9.96644 -9.78265 -9.28130 -8.81425 -8.48710 -6.92031 -5.83633 -3.18622 2.12443 2.63610 3.26083 3.36044 3.41470 3.43754 3.51308 3.86081 4.16514 4.23659 4.34911 4.43845 4.49499 4.74695 5.03395 5.13318 5.24053 5.26868 5.27578 5.31376 5.37992 5.49625 5.62222 5.75047 5.81878 5.95837 6.13317 6.38198 6.42737 6.61206 6.63629 6.81206 7.24865 7.30296 7.48728 7.67415 7.87270 8.15872 9.06546 9.69210 10.45350 11.30582 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.042513 B = 0.003211 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.460133 B = 8718.832403 C = 8907.637073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.185 3.815 11 C -0.175 4.175 12 H 0.104 0.896 13 C -0.180 4.180 14 H 0.106 0.894 15 C 0.155 3.845 16 C 0.089 3.911 17 H 0.134 0.866 18 N -0.684 5.684 19 C 0.512 3.488 20 O -0.513 6.513 21 C 0.067 3.933 22 F -0.181 7.181 23 C -0.159 4.159 24 C 0.049 3.951 25 O -0.372 6.372 26 C 0.041 3.959 27 H 0.255 0.745 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.403 0.597 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -18.469 -7.357 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.197 4.197 12 H 0.122 0.878 13 C -0.202 4.202 14 H 0.124 0.876 15 C 0.028 3.972 16 C -0.016 4.016 17 H 0.151 0.849 18 N -0.332 5.332 19 C 0.295 3.705 20 O -0.388 6.388 21 C 0.045 3.955 22 F -0.162 7.162 23 C -0.197 4.197 24 C -0.027 4.027 25 O -0.291 6.291 26 C -0.036 4.036 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.878 -18.066 -6.717 19.882 hybrid contribution 1.060 0.622 -0.424 1.300 sum -3.819 -17.445 -7.142 19.233 Atomic orbital electron populations 1.69897 1.05065 1.25504 1.55560 1.24914 0.95661 0.98033 1.01584 0.86074 0.78731 0.83218 0.77558 1.21511 1.21626 1.20468 1.19013 0.90848 0.82234 1.43635 0.90437 1.45176 1.13251 0.99985 1.73145 1.21072 0.86962 0.92402 0.93713 1.24762 1.01676 0.92634 1.00621 0.87830 1.24315 0.90071 1.02162 1.03612 0.87647 1.21131 0.97319 0.85885 0.92844 1.21964 0.99362 0.84768 0.95504 0.84853 1.45371 1.37596 1.26790 1.23416 1.20140 0.80591 0.83011 0.86774 1.90759 1.50939 1.74114 1.22988 1.22734 0.84936 0.91019 0.96839 1.92945 1.51537 1.77834 1.93849 1.23850 0.97109 0.99781 0.98917 1.23610 1.02137 0.90225 0.86730 1.88458 1.52067 1.36615 1.51919 1.23729 0.90578 0.94844 0.94497 0.93478 0.95507 0.88922 0.95473 0.92820 0.76307 0.87874 0.86784 0.88420 0.91279 0.88680 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 10.86 55.49 0.60 -25.89 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -14.94 3.38 -168.86 -0.57 -15.51 16 10 C 0.18 4.37 5.70 -2.41 -0.01 4.35 16 11 C -0.18 -3.21 7.06 -89.21 -0.63 -3.84 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 13 C -0.18 -3.08 7.06 -89.22 -0.63 -3.71 16 14 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.19 7.04 -2.40 -0.02 3.17 16 16 C 0.09 1.45 5.97 -67.93 -0.41 1.04 16 17 H 0.13 2.45 7.40 -51.93 -0.38 2.06 16 18 N -0.68 -8.86 5.56 -53.81 -0.30 -9.16 16 19 C 0.51 6.88 6.77 -10.98 -0.07 6.81 16 20 O -0.51 -8.62 15.25 5.57 0.08 -8.53 16 21 C 0.07 0.70 1.44 -89.82 -0.13 0.57 16 22 F -0.18 -1.96 16.97 2.25 0.04 -1.92 16 23 C -0.16 -1.44 6.15 -24.17 -0.15 -1.59 16 24 C 0.05 0.39 7.79 38.49 0.30 0.69 16 25 O -0.37 -3.86 11.36 -35.23 -0.40 -4.26 16 26 C 0.04 0.39 7.22 37.88 0.27 0.66 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 2.44 6.51 -51.93 -0.34 2.11 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.40 4.17 8.83 -40.82 -0.36 3.81 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.13 7.34 -51.93 -0.38 0.75 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.90 7.81 -51.93 -0.41 0.49 16 38 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -31.53 319.49 -7.70 -39.23 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.22 Total: 3.11 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.72 Total: 1.47 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.27 Total: -50.56 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.32 Total: -12.80 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.53 -7.70 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961590938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.502 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds