Wall clock time and date at job start Tue Mar 31 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47156 * 270.00016 * 3 2 1 5 5 H 1.48507 * 109.46745 * 29.99757 * 3 2 1 6 6 H 1.48498 * 109.47233 * 149.99522 * 3 2 1 7 7 C 1.38814 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99548 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00047 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.88762 * 37.42720 * 10 9 7 12 12 C 1.55155 * 111.00330 * 273.54228 * 10 9 7 13 13 C 1.54328 * 102.94191 * 206.38706 * 12 10 9 14 14 N 1.47018 * 107.27241 * 22.19313 * 13 12 10 15 15 C 1.34772 * 125.65129 * 181.01965 * 14 13 12 16 16 O 1.21279 * 120.00455 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99649 * 0.02740 * 15 14 13 18 18 O 1.42903 * 109.46710 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99741 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.45303 * 332.60200 * 19 18 17 21 21 C 1.54508 * 110.50938 * 210.00243 * 19 18 17 22 22 C 1.54478 * 104.05975 * 241.35404 * 21 19 18 23 23 O 1.44426 * 104.80787 * 23.97594 * 22 21 19 24 24 C 1.44428 * 105.27466 * 319.49289 * 23 22 21 25 25 C 1.47426 * 108.70012 * 1.28955 * 14 13 12 26 26 H 0.97005 * 119.99387 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99474 * 359.97438 * 9 7 2 28 28 H 1.09002 * 110.71693 * 88.02653 * 12 10 9 29 29 H 1.08999 * 110.87785 * 324.82247 * 12 10 9 30 30 H 1.08998 * 109.88251 * 262.77604 * 13 12 10 31 31 H 1.08999 * 109.88387 * 141.61479 * 13 12 10 32 32 H 1.09002 * 109.47219 * 60.00080 * 17 15 14 33 33 H 1.08993 * 109.47024 * 299.99626 * 17 15 14 34 34 H 1.08999 * 110.51393 * 359.97438 * 21 19 18 35 35 H 1.08995 * 110.51384 * 122.57292 * 21 19 18 36 36 H 1.08998 * 110.37696 * 142.81296 * 22 21 19 37 37 H 1.09006 * 110.37568 * 265.03533 * 22 21 19 38 38 H 1.09007 * 110.36954 * 281.67773 * 24 23 22 39 39 H 1.08993 * 110.37552 * 159.34160 * 24 23 22 40 40 H 1.09000 * 110.37006 * 94.48581 * 25 14 13 41 41 H 1.09006 * 110.36234 * 216.80266 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9521 -3.5888 0.6212 12 6 2.4146 -4.0943 -1.4436 13 6 2.5189 -5.6294 -1.3241 14 7 1.7461 -6.0286 -0.1389 15 6 1.6056 -7.2881 0.3196 16 8 0.9410 -7.5019 1.3114 17 6 2.2744 -8.4310 -0.4000 18 8 1.9789 -9.6561 0.2737 19 6 2.5691 -10.8087 -0.3308 20 1 2.7162 -10.6457 -1.3985 21 6 1.6902 -12.0564 -0.0897 22 6 2.6026 -13.0084 0.7150 23 8 3.5677 -12.1435 1.3525 24 6 3.9085 -11.1544 0.3567 25 6 1.1448 -4.8237 0.4611 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.3682 -3.6658 -1.7519 29 1 1.6244 -3.8146 -2.1403 30 1 3.5619 -5.9217 -1.2023 31 1 2.1017 -6.0998 -2.2145 32 1 3.3528 -8.2730 -0.4096 33 1 1.9053 -8.4810 -1.4243 34 1 0.8057 -11.7942 0.4909 35 1 1.4029 -12.5103 -1.0380 36 1 2.0225 -13.5469 1.4643 37 1 3.1024 -13.7099 0.0470 38 1 4.6100 -11.5704 -0.3666 39 1 4.3315 -10.2688 0.8307 40 1 0.1293 -4.6821 0.0914 41 1 1.1462 -4.9004 1.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968647693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:11 Heat of formation + Delta-G solvation = -101.920582 kcal Electronic energy + Delta-G solvation = -22239.032450 eV Core-core repulsion = 18733.801059 eV Total energy + Delta-G solvation = -3505.231391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20556 -39.60214 -37.65206 -36.71987 -34.18398 -31.90495 -31.54698 -29.66251 -29.32299 -28.59466 -26.80632 -23.70218 -23.20188 -22.76337 -21.55720 -20.16510 -19.31847 -17.66576 -17.39253 -17.14240 -16.49695 -16.42229 -15.91484 -15.53657 -15.29546 -14.79394 -14.40864 -13.90511 -13.56318 -13.32360 -13.16079 -13.03076 -12.75364 -12.36467 -12.30290 -12.13739 -11.89509 -11.79487 -11.66892 -11.20213 -11.16529 -10.88981 -10.72251 -10.43424 -10.35484 -10.09540 -9.81360 -9.74831 -9.65360 -8.99547 -8.48436 -7.08699 -5.85462 -3.16371 2.63053 2.67214 3.38773 3.44207 3.46148 3.57432 3.65310 4.14159 4.44392 4.49848 4.51644 4.60124 4.71952 4.83477 4.93152 4.97245 5.02881 5.05002 5.22551 5.28476 5.29568 5.36023 5.44802 5.50886 5.53695 5.66585 5.70920 5.91299 6.09470 6.18609 6.31277 6.34399 6.47799 6.54764 6.83010 6.86986 7.62092 7.63105 8.25306 8.31959 9.43509 9.97149 10.31995 11.36698 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.051797 B = 0.002607 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.446343 B =10738.871849 C =10870.958293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.526 3.474 16 O -0.523 6.523 17 C 0.047 3.953 18 O -0.346 6.346 19 C 0.053 3.947 20 H 0.080 0.920 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.368 6.368 24 C 0.024 3.976 25 C 0.101 3.899 26 H 0.257 0.743 27 H 0.387 0.613 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -23.286 -5.996 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.350 5.350 15 C 0.313 3.687 16 O -0.399 6.399 17 C -0.033 4.033 18 O -0.264 6.264 19 C -0.006 4.006 20 H 0.098 0.902 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.286 6.286 24 C -0.053 4.053 25 C -0.022 4.022 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.891 -23.349 -5.009 24.854 hybrid contribution 0.270 1.006 -0.723 1.268 sum 7.161 -22.343 -5.732 24.152 Atomic orbital electron populations 1.69666 1.05166 1.25929 1.56952 1.24784 0.95543 0.97850 1.02484 0.86161 0.78675 0.83612 0.77528 1.21630 1.21698 1.20669 1.19199 0.91045 0.83747 1.43606 0.90962 1.42257 1.05853 0.99316 1.88119 1.21337 0.94194 0.85616 0.92842 0.91793 1.23419 1.02957 0.91058 1.02163 1.22157 0.95137 0.97970 0.87240 1.48380 1.51221 1.05925 1.29440 1.19735 0.81751 0.82299 0.84919 1.90740 1.40104 1.83377 1.25639 1.22272 1.00056 0.84893 0.96064 1.88143 1.72938 1.12900 1.52436 1.23606 0.93151 0.86855 0.96974 0.90178 1.23092 1.00318 0.94001 1.01890 1.23422 0.90015 0.92961 0.96786 1.89188 1.60933 1.42373 1.36132 1.23977 0.96061 0.93308 0.91988 1.22595 0.97483 0.83145 0.98935 0.93319 0.77901 0.90634 0.90445 0.91817 0.91994 0.90302 0.90235 0.88799 0.89473 0.88714 0.92133 0.91354 0.88354 0.91173 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.13 5.28 -51.24 -0.27 -17.40 16 10 C 0.17 3.23 3.70 -65.67 -0.24 2.99 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 12 C -0.15 -2.38 6.64 -24.90 -0.17 -2.54 16 13 C 0.10 1.19 6.48 -3.06 -0.02 1.17 16 14 N -0.61 -9.23 3.32 -170.38 -0.57 -9.79 16 15 C 0.53 8.27 7.93 -10.99 -0.09 8.18 16 16 O -0.52 -10.64 16.75 -14.35 -0.24 -10.88 16 17 C 0.05 0.52 5.45 36.01 0.20 0.71 16 18 O -0.35 -4.44 9.51 -55.14 -0.52 -4.96 16 19 C 0.05 0.46 3.61 -25.16 -0.09 0.37 16 20 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 21 C -0.16 -1.19 6.90 -25.16 -0.17 -1.37 16 22 C 0.05 0.34 7.63 37.93 0.29 0.63 16 23 O -0.37 -4.11 11.65 -35.23 -0.41 -4.52 16 24 C 0.02 0.21 7.38 37.93 0.28 0.49 16 25 C 0.10 1.78 6.53 -2.41 -0.02 1.76 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.39 9.91 7.71 -40.82 -0.31 9.60 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 41 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -33.87 341.49 -8.02 -41.89 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.58 Total: 5.10 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.28 Total: 5.36 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.11 Total: -53.86 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.18 Total: -20.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.87 -8.02 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968647693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.030 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds