Wall clock time and date at job start Tue Mar 31 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47156 * 270.00016 * 3 2 1 5 5 H 1.48507 * 109.46745 * 29.99757 * 3 2 1 6 6 H 1.48498 * 109.47233 * 149.99522 * 3 2 1 7 7 C 1.38814 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99548 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00047 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.88762 * 37.42720 * 10 9 7 12 12 C 1.55155 * 111.00330 * 273.54228 * 10 9 7 13 13 C 1.54328 * 102.94191 * 206.38706 * 12 10 9 14 14 N 1.47018 * 107.27241 * 22.19313 * 13 12 10 15 15 C 1.34772 * 125.65129 * 181.01965 * 14 13 12 16 16 O 1.21279 * 120.00455 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99649 * 0.02740 * 15 14 13 18 18 O 1.42903 * 109.46710 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99741 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.45303 * 332.60200 * 19 18 17 21 21 C 1.54508 * 110.50938 * 210.00243 * 19 18 17 22 22 C 1.54478 * 104.05975 * 241.35404 * 21 19 18 23 23 O 1.44426 * 104.80787 * 23.97594 * 22 21 19 24 24 C 1.44428 * 105.27466 * 319.49289 * 23 22 21 25 25 C 1.47426 * 108.70012 * 1.28955 * 14 13 12 26 26 H 0.97005 * 119.99387 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99474 * 359.97438 * 9 7 2 28 28 H 1.09002 * 110.71693 * 88.02653 * 12 10 9 29 29 H 1.08999 * 110.87785 * 324.82247 * 12 10 9 30 30 H 1.08998 * 109.88251 * 262.77604 * 13 12 10 31 31 H 1.08999 * 109.88387 * 141.61479 * 13 12 10 32 32 H 1.09002 * 109.47219 * 60.00080 * 17 15 14 33 33 H 1.08993 * 109.47024 * 299.99626 * 17 15 14 34 34 H 1.08999 * 110.51393 * 359.97438 * 21 19 18 35 35 H 1.08995 * 110.51384 * 122.57292 * 21 19 18 36 36 H 1.08998 * 110.37696 * 142.81296 * 22 21 19 37 37 H 1.09006 * 110.37568 * 265.03533 * 22 21 19 38 38 H 1.09007 * 110.36954 * 281.67773 * 24 23 22 39 39 H 1.08993 * 110.37552 * 159.34160 * 24 23 22 40 40 H 1.09000 * 110.37006 * 94.48581 * 25 14 13 41 41 H 1.09006 * 110.36234 * 216.80266 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9521 -3.5888 0.6212 12 6 2.4146 -4.0943 -1.4436 13 6 2.5189 -5.6294 -1.3241 14 7 1.7461 -6.0286 -0.1389 15 6 1.6056 -7.2881 0.3196 16 8 0.9410 -7.5019 1.3114 17 6 2.2744 -8.4310 -0.4000 18 8 1.9789 -9.6561 0.2737 19 6 2.5691 -10.8087 -0.3308 20 1 2.7162 -10.6457 -1.3985 21 6 1.6902 -12.0564 -0.0897 22 6 2.6026 -13.0084 0.7150 23 8 3.5677 -12.1435 1.3525 24 6 3.9085 -11.1544 0.3567 25 6 1.1448 -4.8237 0.4611 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.3682 -3.6658 -1.7519 29 1 1.6244 -3.8146 -2.1403 30 1 3.5619 -5.9217 -1.2023 31 1 2.1017 -6.0998 -2.2145 32 1 3.3528 -8.2730 -0.4096 33 1 1.9053 -8.4810 -1.4243 34 1 0.8057 -11.7942 0.4909 35 1 1.4029 -12.5103 -1.0380 36 1 2.0225 -13.5469 1.4643 37 1 3.1024 -13.7099 0.0470 38 1 4.6100 -11.5704 -0.3666 39 1 4.3315 -10.2688 0.8307 40 1 0.1293 -4.6821 0.0914 41 1 1.1462 -4.9004 1.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968647693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:10 Heat of formation + Delta-G solvation = -126.846249 kcal Electronic energy + Delta-G solvation = -22240.113308 eV Core-core repulsion = 18733.801059 eV Total energy + Delta-G solvation = -3506.312249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22341 -40.47842 -38.84007 -37.72980 -35.94835 -33.41607 -32.45133 -31.13120 -30.22463 -29.54960 -28.04608 -25.51811 -24.13229 -23.73500 -22.17257 -21.65055 -20.47861 -19.28661 -18.52286 -18.02815 -17.63371 -17.26100 -16.90055 -16.53320 -16.38496 -16.00406 -15.61661 -15.44603 -14.95168 -14.60083 -14.42701 -14.14147 -13.76289 -13.41832 -13.38989 -13.12983 -13.01357 -12.92946 -12.67773 -12.65661 -12.38562 -12.32014 -12.13812 -11.77269 -11.73653 -11.60983 -11.08229 -10.94504 -10.93063 -10.41351 -9.72760 -9.05469 -7.95357 -5.25716 1.48890 1.50548 1.51095 1.58434 1.60916 2.56159 2.79497 3.02416 3.34924 3.46460 3.61543 3.70755 3.86877 3.90877 4.04272 4.08276 4.13469 4.21580 4.24191 4.27195 4.37865 4.47266 4.50056 4.51442 4.70478 4.75409 4.81636 4.83445 4.89918 4.99695 5.07859 5.16231 5.26112 5.43619 5.54146 5.75530 6.14666 6.25357 6.48601 7.06824 7.31994 8.03481 8.27264 9.28081 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.051797 B = 0.002607 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.446343 B =10738.871849 C =10870.958293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.144 4.144 13 C 0.104 3.896 14 N -0.611 5.611 15 C 0.518 3.482 16 O -0.584 6.584 17 C 0.055 3.945 18 O -0.387 6.387 19 C 0.047 3.953 20 H 0.118 0.882 21 C -0.155 4.155 22 C 0.040 3.960 23 O -0.407 6.407 24 C 0.020 3.980 25 C 0.108 3.892 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 -24.943 -8.454 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.055 3.945 11 H 0.079 0.921 12 C -0.185 4.185 13 C -0.018 4.018 14 N -0.346 5.346 15 C 0.307 3.693 16 O -0.463 6.463 17 C -0.024 4.024 18 O -0.306 6.306 19 C -0.010 4.010 20 H 0.136 0.864 21 C -0.193 4.193 22 C -0.036 4.036 23 O -0.327 6.327 24 C -0.057 4.057 25 C -0.016 4.016 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.403 -25.053 -7.509 27.793 hybrid contribution -0.471 1.416 0.075 1.494 sum 8.932 -23.637 -7.434 26.339 Atomic orbital electron populations 1.69830 1.06747 1.26127 1.59373 1.25600 0.96341 1.01240 1.03631 0.85122 0.77656 0.79360 0.77488 1.21136 1.22699 1.19311 1.19603 0.91602 0.84666 1.41151 0.89984 1.42425 1.05454 1.00626 1.88528 1.21499 0.93620 0.83951 0.95431 0.92059 1.23207 1.02961 0.93813 0.98521 1.22349 0.97069 0.95281 0.87107 1.48442 1.51050 1.05118 1.30017 1.20777 0.80924 0.83216 0.84343 1.90712 1.42871 1.84248 1.28481 1.22357 1.01256 0.82457 0.96313 1.88110 1.73967 1.14340 1.54151 1.23902 0.92827 0.85566 0.98719 0.86429 1.23147 0.99188 0.94042 1.02928 1.23616 0.89787 0.92992 0.97189 1.89139 1.61861 1.43536 1.38135 1.24148 0.96754 0.92764 0.92051 1.22261 0.97008 0.84498 0.97833 0.94035 0.79443 0.89382 0.91802 0.88160 0.88522 0.87018 0.86586 0.91381 0.86440 0.88860 0.89507 0.88296 0.89522 0.92407 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -12.70 9.98 84.03 0.84 -11.86 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -35.59 5.28 -316.02 -1.67 -37.26 16 10 C 0.16 6.14 3.70 46.46 0.17 6.31 16 11 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 12 C -0.14 -4.09 6.64 31.78 0.21 -3.88 16 13 C 0.10 2.06 6.48 86.73 0.56 2.63 16 14 N -0.61 -17.32 3.32 -811.35 -2.70 -20.02 16 15 C 0.52 15.60 7.93 87.66 0.69 16.29 16 16 O -0.58 -24.33 16.75 16.01 0.27 -24.07 16 17 C 0.06 1.02 5.45 71.24 0.39 1.40 16 18 O -0.39 -9.18 9.51 -129.94 -1.24 -10.42 16 19 C 0.05 0.68 3.61 31.61 0.11 0.79 16 20 H 0.12 0.77 7.82 -2.39 -0.02 0.75 16 21 C -0.16 -2.06 6.90 31.61 0.22 -1.84 16 22 C 0.04 0.55 7.63 72.48 0.55 1.10 16 23 O -0.41 -8.69 11.65 -148.98 -1.74 -10.43 16 24 C 0.02 0.29 7.38 72.48 0.53 0.83 16 25 C 0.11 3.87 6.53 86.93 0.57 4.44 16 26 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 27 H 0.37 19.89 7.71 -92.71 -0.72 19.17 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.12 1.31 8.11 -2.39 -0.02 1.29 16 34 H 0.07 1.25 8.00 -2.39 -0.02 1.23 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 41 H 0.06 2.21 8.03 -2.38 -0.02 2.19 16 Total: -1.00 -78.12 341.49 0.87 -77.26 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.30 Total: 23.89 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.32 Total: 12.43 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -4.08 Total: -115.68 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -2.70 Total: -44.91 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -78.12 0.87 -77.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968647693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.588 kcal (2) G-P(sol) polarization free energy of solvation -78.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds