Wall clock time and date at job start Tue Mar 31 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48493 * 109.47120 * 239.99805 * 3 2 1 5 5 H 1.48500 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46945 * 119.99606 * 3 2 1 7 7 C 1.38804 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00070 * 198.32876 * 7 2 1 9 9 N 1.36937 * 120.00414 * 18.61275 * 7 2 1 10 10 C 1.43464 * 118.94346 * 203.10051 * 9 7 2 11 11 C 1.53236 * 108.26235 * 273.77759 * 10 9 7 12 12 C 1.47138 * 111.81108 * 281.67700 * 11 10 9 13 13 N 1.48208 * 110.34706 * 58.22412 * 12 11 10 14 14 C 1.34783 * 119.96988 * 102.46434 * 13 12 11 15 15 O 1.21274 * 120.00072 * 184.24778 * 14 13 12 16 16 C 1.50701 * 119.99879 * 4.24359 * 14 13 12 17 17 H 1.09007 * 109.52362 * 308.41961 * 16 14 13 18 18 C 1.53135 * 109.52729 * 68.61776 * 16 14 13 19 19 O 1.43071 * 109.15323 * 175.21533 * 18 16 14 20 20 C 1.43073 * 113.59185 * 302.04450 * 19 18 16 21 21 C 1.53140 * 109.14871 * 57.95577 * 20 19 18 22 22 O 1.43071 * 109.15017 * 304.68459 * 21 20 19 23 23 C 1.43624 * 120.06250 * 282.48925 * 13 12 11 24 24 C 1.48863 * 118.93776 * 23.36072 * 9 7 2 25 25 H 0.97002 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.76167 * 33.24290 * 10 9 7 27 27 H 1.09003 * 109.76536 * 154.00590 * 10 9 7 28 28 H 1.08999 * 109.07498 * 161.04314 * 11 10 9 29 29 H 1.09000 * 108.90258 * 42.19576 * 11 10 9 30 30 H 1.09003 * 109.32591 * 297.95948 * 12 11 10 31 31 H 1.08997 * 109.32868 * 178.49621 * 12 11 10 32 32 H 1.09007 * 109.52170 * 295.11607 * 18 16 14 33 33 H 1.09001 * 109.52756 * 55.30983 * 18 16 14 34 34 H 1.09001 * 109.52856 * 298.05284 * 20 19 18 35 35 H 1.08998 * 109.57838 * 177.88703 * 20 19 18 36 36 H 1.09000 * 109.52626 * 184.78596 * 21 20 19 37 37 H 1.09003 * 109.58383 * 64.62124 * 21 20 19 38 38 H 1.08993 * 108.86847 * 329.88324 * 23 13 12 39 39 H 1.08997 * 108.79646 * 211.39123 * 23 13 12 40 40 H 1.08994 * 109.48112 * 260.60747 * 24 9 7 41 41 H 1.09002 * 109.47923 * 20.62845 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0491 -1.2257 0.2947 9 7 1.3793 -2.3572 -0.3774 10 6 1.8972 -3.6136 0.0823 11 6 2.9898 -4.0678 -0.8913 12 6 2.4218 -4.6470 -2.1189 13 7 1.5443 -3.6625 -2.7951 14 6 1.9895 -2.9966 -3.8790 15 8 1.3022 -2.1359 -4.3866 16 6 3.3414 -3.3214 -4.4602 17 1 4.0937 -3.2915 -3.6719 18 6 3.3077 -4.7194 -5.0845 19 8 4.5583 -4.9752 -5.7307 20 6 4.8867 -4.0176 -6.7417 21 6 4.9205 -2.6196 -6.1175 22 8 3.6700 -2.3638 -5.4712 23 6 0.2201 -3.4169 -2.2960 24 6 0.1815 -2.2691 -1.2570 25 1 -0.4850 0.8400 -0.0004 26 1 2.3242 -3.4940 1.0781 27 1 1.0976 -4.3540 0.1100 28 1 3.6145 -4.8153 -0.4022 29 1 3.6061 -3.2087 -1.1563 30 1 1.8404 -5.5332 -1.8642 31 1 3.2310 -4.9309 -2.7917 32 1 3.1420 -5.4627 -4.3045 33 1 2.5018 -4.7722 -5.8165 34 1 4.1340 -4.0467 -7.5295 35 1 5.8642 -4.2521 -7.1631 36 1 5.0863 -1.8763 -6.8973 37 1 5.7266 -2.5656 -5.3857 38 1 -0.1553 -4.3276 -1.8295 39 1 -0.4280 -3.1569 -3.1329 40 1 -0.7209 -2.3566 -0.6521 41 1 0.1805 -1.3098 -1.7747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980737451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:58 Heat of formation + Delta-G solvation = -100.839142 kcal Electronic energy + Delta-G solvation = -24559.368134 eV Core-core repulsion = 21054.183638 eV Total energy + Delta-G solvation = -3505.184496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83993 -40.31654 -38.58773 -37.08429 -36.16741 -33.98207 -33.45078 -32.31146 -29.89957 -28.71753 -27.18305 -26.14781 -25.36444 -23.78480 -22.40494 -21.50190 -20.30630 -18.86937 -18.34540 -18.01081 -17.73540 -17.27768 -16.85261 -16.69837 -16.37317 -15.96159 -15.61063 -15.46226 -15.04825 -14.79411 -14.50682 -14.35753 -13.95590 -13.89440 -13.43342 -13.32074 -12.98441 -12.82650 -12.68652 -12.46122 -12.30494 -12.11162 -11.90581 -11.88948 -11.72534 -11.47815 -11.42069 -10.76521 -10.50421 -10.29504 -9.60539 -8.70280 -7.88744 -5.28378 1.35793 1.42208 1.44715 1.45908 1.82480 2.47639 2.61309 2.80080 3.25886 3.34241 3.46698 3.70814 3.78751 3.92718 3.96817 4.10621 4.19136 4.28872 4.33435 4.41480 4.49022 4.52621 4.62117 4.75560 4.78453 4.80734 4.82579 4.94779 5.00923 5.27443 5.29302 5.52564 5.56151 5.68618 5.77323 5.83703 5.92657 6.36942 6.41778 7.14101 7.18055 7.94265 8.33899 9.16498 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.006120 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.007343 B = 4573.718159 C = 5184.485833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.051 4.051 3 Si 0.950 3.050 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.162 4.162 12 C 0.106 3.894 13 N -0.580 5.580 14 C 0.512 3.488 15 O -0.578 6.578 16 C 0.046 3.954 17 H 0.097 0.903 18 C 0.045 3.955 19 O -0.378 6.378 20 C 0.022 3.978 21 C 0.013 3.987 22 O -0.391 6.391 23 C 0.105 3.895 24 C 0.176 3.824 25 H 0.246 0.754 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.034 0.966 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 -15.781 -9.893 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.779 3.221 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.326 5.326 10 C 0.026 3.974 11 C -0.203 4.203 12 C -0.014 4.014 13 N -0.311 5.311 14 C 0.300 3.700 15 O -0.457 6.457 16 C -0.016 4.016 17 H 0.115 0.885 18 C -0.032 4.032 19 O -0.296 6.296 20 C -0.055 4.055 21 C -0.063 4.063 22 O -0.310 6.310 23 C -0.020 4.020 24 C 0.050 3.950 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.543 -15.244 -10.128 20.641 hybrid contribution 0.029 1.956 0.202 1.967 sum 9.572 -13.288 -9.927 19.150 Atomic orbital electron populations 1.70170 1.06354 1.25411 1.55965 1.25572 0.95929 1.01050 1.02079 0.85595 0.77918 0.80651 0.77940 1.22054 1.22101 1.19282 1.19365 0.93353 0.87009 1.38950 0.91857 1.43881 1.31916 1.02147 1.54703 1.20430 0.95002 0.86809 0.95185 1.21664 1.00034 1.00850 0.97728 1.21370 0.94691 0.90936 0.94423 1.47484 1.15786 1.41063 1.26800 1.20498 0.87685 0.80951 0.80915 1.90673 1.59099 1.32752 1.63152 1.22567 0.94744 0.91918 0.92338 0.88506 1.23301 0.87336 0.93971 0.98642 1.88094 1.37869 1.50417 1.53251 1.23482 1.04214 0.87657 0.90112 1.23647 0.85061 0.99239 0.98331 1.88206 1.40317 1.50051 1.52457 1.21703 0.83491 0.99824 0.97026 1.21522 0.88232 0.95638 0.89655 0.94513 0.94359 0.92356 0.87783 0.94692 0.87082 0.87885 0.83979 0.91879 0.91723 0.84205 0.85680 0.91263 0.88079 0.92161 0.96400 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 11.05 21.65 0.24 -57.76 16 2 C -0.05 -3.02 4.85 84.86 0.41 -2.61 16 3 Si 0.95 48.35 29.59 68.60 2.03 50.38 16 4 H -0.29 -15.18 7.11 99.48 0.71 -14.48 16 5 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.26 -14.41 9.27 84.03 0.78 -13.63 16 8 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.60 -29.64 2.55 -699.18 -1.78 -31.42 16 10 C 0.15 5.59 5.59 87.02 0.49 6.07 16 11 C -0.16 -4.55 5.63 28.85 0.16 -4.39 16 12 C 0.11 2.44 5.03 84.23 0.42 2.86 16 13 N -0.58 -19.55 2.46 -831.23 -2.04 -21.59 16 14 C 0.51 19.97 7.02 87.66 0.62 20.58 16 15 O -0.58 -29.07 16.11 15.85 0.26 -28.82 16 16 C 0.05 1.38 2.40 29.89 0.07 1.45 16 17 H 0.10 2.77 7.49 -2.38 -0.02 2.75 16 18 C 0.04 0.97 5.96 72.03 0.43 1.40 16 19 O -0.38 -7.74 10.85 -136.00 -1.48 -9.22 16 20 C 0.02 0.37 7.05 72.03 0.51 0.87 16 21 C 0.01 0.28 7.05 72.03 0.51 0.79 16 22 O -0.39 -13.19 10.04 -122.94 -1.23 -14.43 16 23 C 0.10 3.93 5.22 87.55 0.46 4.39 16 24 C 0.18 8.76 5.21 86.56 0.45 9.21 16 25 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.04 1.45 8.02 -2.38 -0.02 1.44 16 27 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.03 1.22 7.90 -2.39 -0.02 1.20 16 30 H 0.11 1.81 8.06 -2.39 -0.02 1.79 16 31 H 0.10 1.82 4.08 -2.39 -0.01 1.81 16 32 H 0.14 2.25 5.68 -2.38 -0.01 2.24 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 2.96 7.73 -2.39 -0.02 2.95 16 39 H 0.06 2.40 7.43 -2.39 -0.02 2.38 16 40 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16 41 H 0.02 1.37 6.51 -2.39 -0.02 1.35 16 Total: -1.00 -81.21 317.79 2.31 -78.89 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.02 Total: 6.96 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 5.30 Total: 27.01 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.59 Total: -110.77 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -2.45 Total: -52.46 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -81.21 2.31 -78.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980737451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.946 kcal (2) G-P(sol) polarization free energy of solvation -81.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds