Wall clock time and date at job start Tue Mar 31 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48504 * 109.47260 * 89.99566 * 3 2 1 5 5 H 1.48504 * 109.47154 * 209.99582 * 3 2 1 6 6 H 1.48501 * 109.47026 * 329.99617 * 3 2 1 7 7 C 1.38814 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99920 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49588 * 324.99513 * 10 9 7 12 12 C 1.53040 * 109.49873 * 85.06415 * 10 9 7 13 13 C 1.53038 * 109.53896 * 181.31195 * 12 10 9 14 14 C 1.53185 * 109.31334 * 298.63681 * 13 12 10 15 15 N 1.46926 * 108.77985 * 54.63383 * 14 13 12 16 16 C 1.34777 * 120.63210 * 126.43067 * 15 14 13 17 17 O 1.21282 * 119.99924 * 174.66171 * 16 15 14 18 18 C 1.50696 * 120.00216 * 354.65904 * 16 15 14 19 19 H 1.09002 * 109.52012 * 49.63949 * 18 16 15 20 20 C 1.53143 * 109.52784 * 289.50975 * 18 16 15 21 21 O 1.43073 * 109.14986 * 184.78655 * 20 18 16 22 22 C 1.43069 * 113.59543 * 57.94928 * 21 20 18 23 23 C 1.53133 * 109.15146 * 302.04536 * 22 21 20 24 24 O 1.43073 * 109.52575 * 169.82899 * 18 16 15 25 25 C 1.46935 * 118.76307 * 306.41148 * 15 14 13 26 26 H 0.97000 * 120.00000 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00039 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.46303 * 301.33869 * 12 10 9 29 29 H 1.09013 * 109.46061 * 61.30795 * 12 10 9 30 30 H 1.09006 * 109.49496 * 58.58693 * 13 12 10 31 31 H 1.08997 * 109.49608 * 178.68084 * 13 12 10 32 32 H 1.09006 * 109.58774 * 174.41803 * 14 13 12 33 33 H 1.08998 * 109.59157 * 294.84173 * 14 13 12 34 34 H 1.09000 * 109.51856 * 304.68573 * 20 18 16 35 35 H 1.08999 * 109.52443 * 64.88080 * 20 18 16 36 36 H 1.08996 * 109.52692 * 61.95276 * 22 21 20 37 37 H 1.09002 * 109.52338 * 182.08096 * 22 21 20 38 38 H 1.09002 * 109.52609 * 175.21842 * 23 22 21 39 39 H 1.09004 * 109.52919 * 295.34665 * 23 22 21 40 40 H 1.08997 * 109.55890 * 293.78654 * 25 15 14 41 41 H 1.08999 * 109.61662 * 173.35283 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9693 -3.5512 -0.5871 12 6 2.4199 -4.0364 1.4394 13 6 3.2136 -5.3449 1.4390 14 6 2.3485 -6.4620 0.8470 15 7 1.8764 -6.0421 -0.4795 16 6 2.0779 -6.8234 -1.5591 17 8 1.6001 -6.5132 -2.6298 18 6 2.8969 -8.0823 -1.4359 19 1 2.5410 -8.6668 -0.5874 20 6 4.3689 -7.7168 -1.2241 21 8 5.1537 -8.9130 -1.2201 22 6 5.0292 -9.6837 -2.4190 23 6 3.5573 -10.0493 -2.6307 24 8 2.7724 -8.8531 -2.6348 25 6 1.1801 -4.7546 -0.6073 26 1 -0.4850 -0.8400 0.0004 27 1 0.3556 -2.3881 0.0005 28 1 3.0244 -3.2452 1.8828 29 1 1.5073 -4.1657 2.0215 30 1 4.1139 -5.2241 0.8365 31 1 3.4910 -5.6025 2.4611 32 1 2.9410 -7.3721 0.7528 33 1 1.4936 -6.6459 1.4977 34 1 4.7022 -7.0652 -2.0319 35 1 4.4830 -7.2029 -0.2697 36 1 5.3848 -9.0983 -3.2669 37 1 5.6225 -10.5938 -2.3303 38 1 3.4432 -10.5632 -3.5851 39 1 3.2243 -10.7018 -1.8235 40 1 0.2297 -4.7994 -0.0756 41 1 1.0021 -4.5378 -1.6606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998597910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:42 Heat of formation + Delta-G solvation = -102.886277 kcal Electronic energy + Delta-G solvation = -23533.968152 eV Core-core repulsion = 20028.694885 eV Total energy + Delta-G solvation = -3505.273266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89285 -39.39551 -37.45202 -36.24255 -34.84826 -32.69243 -31.94609 -31.18534 -28.87759 -27.74128 -25.85807 -24.70406 -23.58827 -22.28498 -22.01202 -20.48397 -19.08541 -17.72881 -17.34638 -17.16278 -16.99755 -16.25076 -15.76198 -15.44429 -15.16893 -14.81755 -14.29046 -14.09401 -13.78999 -13.72179 -13.62003 -13.31651 -13.24878 -12.87372 -12.34382 -12.23594 -11.95531 -11.31528 -11.13651 -11.04048 -10.91698 -10.82149 -10.61682 -10.46452 -10.34651 -10.02888 -9.75534 -9.50733 -9.24051 -8.94998 -8.55521 -7.09429 -6.13007 -3.14250 2.47518 2.57093 3.31517 3.50595 3.55614 3.57188 3.69759 4.16163 4.28419 4.51556 4.61730 4.63533 4.72043 4.76099 4.82180 4.98706 5.06727 5.15452 5.23210 5.35532 5.39448 5.41359 5.45319 5.53127 5.67173 5.67779 5.87944 6.00865 6.07402 6.24987 6.38395 6.46951 6.53370 6.63647 6.76058 6.91234 7.36912 7.77858 8.12475 8.72309 9.17480 10.03860 10.17514 11.35212 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.003730 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.351223 B = 7505.691204 C = 7621.605412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.052 0.948 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.099 3.901 15 N -0.602 5.602 16 C 0.521 3.479 17 O -0.515 6.515 18 C 0.040 3.960 19 H 0.092 0.908 20 C 0.034 3.966 21 O -0.373 6.373 22 C 0.020 3.980 23 C 0.023 3.977 24 O -0.350 6.350 25 C 0.107 3.893 26 H 0.256 0.744 27 H 0.367 0.633 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -21.539 0.992 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.375 5.375 10 C 0.063 3.937 11 H 0.070 0.930 12 C -0.177 4.177 13 C -0.173 4.173 14 C -0.023 4.023 15 N -0.337 5.337 16 C 0.307 3.693 17 O -0.390 6.390 18 C -0.022 4.022 19 H 0.109 0.891 20 C -0.043 4.043 21 O -0.291 6.291 22 C -0.057 4.057 23 C -0.054 4.054 24 O -0.268 6.268 25 C -0.015 4.015 26 H 0.067 0.933 27 H 0.201 0.799 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.046 -19.669 0.362 21.652 hybrid contribution -0.077 -1.793 0.173 1.803 sum 8.969 -21.462 0.535 23.267 Atomic orbital electron populations 1.70846 1.06066 1.28524 1.53294 1.25780 0.97035 1.01003 1.00239 0.83198 0.73917 0.75313 0.76218 1.22296 1.22129 1.21342 1.20029 0.91993 0.85501 1.48775 0.91666 1.42321 1.04837 1.00492 1.89821 1.20420 0.94573 0.85457 0.93296 0.93029 1.22267 0.99659 0.95299 1.00508 1.21967 0.98717 0.95880 1.00767 1.21952 0.98819 0.97774 0.83783 1.48027 1.57870 1.20533 1.07288 1.19831 0.81100 0.84198 0.84215 1.90739 1.49080 1.71993 1.27140 1.22576 0.96384 0.93238 0.89997 0.89060 1.23266 0.88579 0.87707 1.04775 1.88118 1.66918 1.35587 1.38512 1.23321 0.96899 0.97050 0.88452 1.23342 0.90921 0.87282 1.03851 1.88246 1.67068 1.35139 1.36389 1.22050 0.95061 0.80972 1.03428 0.93296 0.79917 0.91331 0.92491 0.91700 0.90919 0.90169 0.90816 0.91118 0.86595 0.91721 0.87420 0.87179 0.91890 0.91572 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 3 Si 1.08 25.90 29.92 -169.99 -5.09 20.81 16 4 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.33 -9.22 9.93 -15.06 -0.15 -9.37 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -18.04 5.12 -53.31 -0.27 -18.32 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.14 -2.24 5.47 -26.69 -0.15 -2.39 16 13 C -0.13 -1.58 5.97 -26.62 -0.16 -1.74 16 14 C 0.10 1.07 5.61 -3.71 -0.02 1.05 16 15 N -0.60 -8.70 2.97 -172.76 -0.51 -9.21 16 16 C 0.52 8.18 7.03 -10.99 -0.08 8.11 16 17 O -0.52 -10.43 15.97 -14.10 -0.23 -10.65 16 18 C 0.04 0.48 2.39 -27.81 -0.07 0.42 16 19 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 20 C 0.03 0.37 6.00 37.23 0.22 0.59 16 21 O -0.37 -3.85 10.85 -48.80 -0.53 -4.38 16 22 C 0.02 0.16 7.05 37.23 0.26 0.42 16 23 C 0.02 0.20 7.05 37.23 0.26 0.46 16 24 O -0.35 -4.65 10.05 -62.43 -0.63 -5.28 16 25 C 0.11 1.88 5.89 -3.70 -0.02 1.86 16 26 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 27 H 0.37 9.34 6.63 -40.82 -0.27 9.06 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.66 4.56 -51.93 -0.24 0.43 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.12 1.08 5.77 -51.93 -0.30 0.78 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.86 7.04 -51.93 -0.37 1.50 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -34.75 323.74 -7.88 -42.63 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.08 Total: 6.51 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.19 Total: 1.26 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.03 Total: -55.78 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.38 Total: -20.31 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.75 -7.88 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998597910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.260 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds