Wall clock time and date at job start Tue Mar 31 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47166 * 239.99761 * 3 2 1 5 5 H 1.48499 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47493 * 119.99640 * 3 2 1 7 7 C 1.38809 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00067 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64099 * 323.31206 * 10 9 7 12 12 C 1.55156 * 110.71932 * 86.45553 * 10 9 7 13 13 C 1.54908 * 101.58139 * 154.04083 * 12 10 9 14 14 N 1.47430 * 104.82938 * 322.99196 * 13 12 10 15 15 C 1.34778 * 125.64619 * 204.08958 * 14 13 12 16 16 O 1.21275 * 120.00243 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99852 * 0.02664 * 15 14 13 18 18 O 1.42907 * 109.46967 * 179.97438 * 17 15 14 19 19 C 1.42897 * 113.99723 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.43873 * 330.70403 * 19 18 17 21 21 C 1.54816 * 110.59920 * 208.07886 * 19 18 17 22 22 C 1.54989 * 102.09401 * 220.38972 * 21 19 18 23 23 O 1.44383 * 103.48976 * 37.02246 * 22 21 19 24 24 C 1.43739 * 106.97729 * 319.94114 * 23 22 21 25 25 C 1.47011 * 108.70481 * 24.35653 * 14 13 12 26 26 H 0.96995 * 120.00122 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99409 * 0.02562 * 9 7 2 28 28 H 1.09006 * 111.00195 * 35.96947 * 12 10 9 29 29 H 1.08994 * 111.00397 * 272.11825 * 12 10 9 30 30 H 1.08997 * 110.36723 * 204.15626 * 13 12 10 31 31 H 1.09000 * 110.36493 * 81.82919 * 13 12 10 32 32 H 1.09004 * 109.47108 * 60.00234 * 17 15 14 33 33 H 1.08997 * 109.47105 * 299.99778 * 17 15 14 34 34 H 1.08999 * 110.90817 * 338.58967 * 21 19 18 35 35 H 1.09005 * 110.90433 * 102.19294 * 21 19 18 36 36 H 1.08999 * 110.62077 * 278.52724 * 22 21 19 37 37 H 1.08999 * 110.75439 * 155.59172 * 22 21 19 38 38 H 1.09005 * 109.87679 * 267.08788 * 24 23 22 39 39 H 1.08998 * 110.00208 * 146.00696 * 24 23 22 40 40 H 1.09002 * 109.88335 * 118.12938 * 25 14 13 41 41 H 1.09003 * 109.88715 * 239.29268 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9587 -3.5806 -0.6089 12 6 2.4103 -4.0873 1.4490 13 6 2.5191 -5.6252 1.2986 14 7 1.4630 -5.9857 0.3350 15 6 0.8735 -7.1933 0.2311 16 8 0.0123 -7.3780 -0.6026 17 6 1.2846 -8.3141 1.1508 18 8 0.5215 -9.4836 0.8472 19 6 0.8357 -10.6115 1.6665 20 1 1.8757 -10.5689 1.9902 21 6 0.5585 -11.9312 0.9060 22 6 -0.0703 -12.8171 2.0115 23 8 -0.8674 -11.8869 2.7757 24 6 -0.1062 -10.6725 2.8845 25 6 1.1640 -4.8118 -0.4978 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.6128 -3.8179 2.1415 29 1 3.3610 -3.6574 1.7641 30 1 2.3412 -6.1136 2.2566 31 1 3.4989 -5.8998 0.9079 32 1 1.1032 -8.0207 2.1849 33 1 2.3450 -8.5261 1.0139 34 1 -0.1457 -11.7693 0.0899 35 1 1.4857 -12.3695 0.5368 36 1 0.7056 -13.2605 2.6356 37 1 -0.6991 -13.5925 1.5740 38 1 0.4780 -10.6825 3.8047 39 1 -0.7749 -9.8117 2.8795 40 1 1.3867 -5.0316 -1.5420 41 1 0.1143 -4.5385 -0.3902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018836804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:20 Heat of formation + Delta-G solvation = -101.663719 kcal Electronic energy + Delta-G solvation = -22235.837438 eV Core-core repulsion = 18730.617186 eV Total energy + Delta-G solvation = -3505.220252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21362 -39.61757 -37.70672 -36.77702 -34.17749 -31.90738 -31.54485 -29.64817 -29.37203 -28.60501 -26.80768 -23.69815 -23.11206 -22.76689 -21.68535 -20.15581 -19.33465 -17.72874 -17.46597 -17.20577 -16.43241 -16.25638 -16.12959 -15.48439 -15.15673 -14.81834 -14.47633 -13.80562 -13.55771 -13.44226 -13.26951 -12.96461 -12.67477 -12.57897 -12.40615 -12.06669 -11.87220 -11.77858 -11.70501 -11.21643 -11.12812 -10.86844 -10.74735 -10.40524 -10.29329 -10.14369 -9.81221 -9.79217 -9.65895 -9.00047 -8.48083 -7.08364 -5.84850 -3.16102 2.61110 2.67246 3.39160 3.43623 3.45216 3.52337 3.63685 4.09362 4.44122 4.47530 4.51533 4.57090 4.74274 4.81957 4.90411 4.95968 4.99106 5.12998 5.22574 5.29414 5.30030 5.33093 5.48937 5.50456 5.51590 5.64551 5.71214 5.89843 6.09000 6.19748 6.31141 6.41175 6.48468 6.54148 6.79362 6.85471 7.61062 7.62646 8.25260 8.32450 9.43685 9.97653 10.32209 11.37213 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.002612 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.371644 B =10715.246571 C =10761.074869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.095 3.905 14 N -0.612 5.612 15 C 0.525 3.475 16 O -0.523 6.523 17 C 0.047 3.953 18 O -0.347 6.347 19 C 0.053 3.947 20 H 0.079 0.921 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.372 6.372 24 C 0.023 3.977 25 C 0.103 3.897 26 H 0.258 0.742 27 H 0.386 0.614 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -22.960 6.246 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.028 4.028 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.399 6.399 17 C -0.033 4.033 18 O -0.265 6.265 19 C -0.005 4.005 20 H 0.097 0.903 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.291 6.291 24 C -0.054 4.054 25 C -0.020 4.020 26 H 0.068 0.932 27 H 0.221 0.779 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.760 -23.006 5.704 24.392 hybrid contribution 0.688 1.054 0.280 1.289 sum 6.449 -21.952 5.984 23.649 Atomic orbital electron populations 1.69653 1.05179 1.26073 1.56778 1.24786 0.95530 0.97858 1.02451 0.86236 0.78515 0.83325 0.77873 1.21155 1.21647 1.21174 1.19154 0.91009 0.83773 1.43827 0.90992 1.42354 1.05829 0.99323 1.88139 1.21171 0.94126 0.85663 0.93020 0.91794 1.23568 1.02811 0.91357 1.01822 1.22459 0.90444 0.98037 0.91847 1.48404 1.39273 1.10453 1.36736 1.19731 0.82103 0.82115 0.84847 1.90739 1.31059 1.81593 1.36491 1.22280 0.96139 0.86187 0.98660 1.88123 1.61771 1.18508 1.58069 1.23611 0.98524 0.87176 0.91213 0.90271 1.23232 1.02909 0.93243 0.99682 1.23552 0.95022 0.92868 0.91542 1.88918 1.41595 1.23787 1.74824 1.23765 0.95353 0.89237 0.97027 1.22303 1.01136 0.84435 0.94127 0.93243 0.77906 0.90519 0.90423 0.91390 0.91444 0.90230 0.90177 0.88728 0.89376 0.91959 0.88424 0.91693 0.88651 0.91483 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.55 9.98 -15.06 -0.15 -6.70 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.72 -17.21 5.26 -51.64 -0.27 -17.48 16 10 C 0.17 3.19 3.57 -66.09 -0.24 2.96 16 11 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 12 C -0.15 -2.37 6.77 -24.58 -0.17 -2.54 16 13 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 14 N -0.61 -9.20 3.33 -170.52 -0.57 -9.77 16 15 C 0.53 8.26 7.93 -10.98 -0.09 8.17 16 16 O -0.52 -10.65 16.83 -14.35 -0.24 -10.89 16 17 C 0.05 0.52 5.27 36.01 0.19 0.71 16 18 O -0.35 -4.39 9.50 -55.14 -0.52 -4.92 16 19 C 0.05 0.47 3.52 -25.20 -0.09 0.38 16 20 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 21 C -0.15 -1.19 6.90 -24.72 -0.17 -1.36 16 22 C 0.05 0.34 7.72 38.21 0.29 0.63 16 23 O -0.37 -4.01 11.52 -35.23 -0.41 -4.42 16 24 C 0.02 0.21 7.52 37.73 0.28 0.50 16 25 C 0.10 1.81 6.63 -3.07 -0.02 1.79 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 10.06 7.53 -40.82 -0.31 9.75 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.63 7.48 -51.93 -0.39 0.25 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 33 H 0.08 0.66 8.10 -51.93 -0.42 0.23 16 34 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.98 7.97 -51.93 -0.41 0.57 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.41 7.70 -51.93 -0.40 1.01 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -33.75 340.31 -7.96 -41.71 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.51 Total: 5.46 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.26 Total: 5.30 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.11 Total: -54.07 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -1.17 Total: -20.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.75 -7.96 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018836804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.956 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds