Wall clock time and date at job start Tue Mar 31 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47166 * 239.99761 * 3 2 1 5 5 H 1.48499 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47493 * 119.99640 * 3 2 1 7 7 C 1.38809 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00067 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64099 * 323.31206 * 10 9 7 12 12 C 1.55156 * 110.71932 * 86.45553 * 10 9 7 13 13 C 1.54908 * 101.58139 * 154.04083 * 12 10 9 14 14 N 1.47430 * 104.82938 * 322.99196 * 13 12 10 15 15 C 1.34778 * 125.64619 * 204.08958 * 14 13 12 16 16 O 1.21275 * 120.00243 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99852 * 0.02664 * 15 14 13 18 18 O 1.42907 * 109.46967 * 179.97438 * 17 15 14 19 19 C 1.42897 * 113.99723 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.43873 * 330.70403 * 19 18 17 21 21 C 1.54816 * 110.59920 * 208.07886 * 19 18 17 22 22 C 1.54989 * 102.09401 * 220.38972 * 21 19 18 23 23 O 1.44383 * 103.48976 * 37.02246 * 22 21 19 24 24 C 1.43739 * 106.97729 * 319.94114 * 23 22 21 25 25 C 1.47011 * 108.70481 * 24.35653 * 14 13 12 26 26 H 0.96995 * 120.00122 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99409 * 0.02562 * 9 7 2 28 28 H 1.09006 * 111.00195 * 35.96947 * 12 10 9 29 29 H 1.08994 * 111.00397 * 272.11825 * 12 10 9 30 30 H 1.08997 * 110.36723 * 204.15626 * 13 12 10 31 31 H 1.09000 * 110.36493 * 81.82919 * 13 12 10 32 32 H 1.09004 * 109.47108 * 60.00234 * 17 15 14 33 33 H 1.08997 * 109.47105 * 299.99778 * 17 15 14 34 34 H 1.08999 * 110.90817 * 338.58967 * 21 19 18 35 35 H 1.09005 * 110.90433 * 102.19294 * 21 19 18 36 36 H 1.08999 * 110.62077 * 278.52724 * 22 21 19 37 37 H 1.08999 * 110.75439 * 155.59172 * 22 21 19 38 38 H 1.09005 * 109.87679 * 267.08788 * 24 23 22 39 39 H 1.08998 * 110.00208 * 146.00696 * 24 23 22 40 40 H 1.09002 * 109.88335 * 118.12938 * 25 14 13 41 41 H 1.09003 * 109.88715 * 239.29268 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9587 -3.5806 -0.6089 12 6 2.4103 -4.0873 1.4490 13 6 2.5191 -5.6252 1.2986 14 7 1.4630 -5.9857 0.3350 15 6 0.8735 -7.1933 0.2311 16 8 0.0123 -7.3780 -0.6026 17 6 1.2846 -8.3141 1.1508 18 8 0.5215 -9.4836 0.8472 19 6 0.8357 -10.6115 1.6665 20 1 1.8757 -10.5689 1.9902 21 6 0.5585 -11.9312 0.9060 22 6 -0.0703 -12.8171 2.0115 23 8 -0.8674 -11.8869 2.7757 24 6 -0.1062 -10.6725 2.8845 25 6 1.1640 -4.8118 -0.4978 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.6128 -3.8179 2.1415 29 1 3.3610 -3.6574 1.7641 30 1 2.3412 -6.1136 2.2566 31 1 3.4989 -5.8998 0.9079 32 1 1.1032 -8.0207 2.1849 33 1 2.3450 -8.5261 1.0139 34 1 -0.1457 -11.7693 0.0899 35 1 1.4857 -12.3695 0.5368 36 1 0.7056 -13.2605 2.6356 37 1 -0.6991 -13.5925 1.5740 38 1 0.4780 -10.6825 3.8047 39 1 -0.7749 -9.8117 2.8795 40 1 1.3867 -5.0316 -1.5420 41 1 0.1143 -4.5385 -0.3902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018836804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:19 Heat of formation + Delta-G solvation = -126.580645 kcal Electronic energy + Delta-G solvation = -22236.917917 eV Core-core repulsion = 18730.617186 eV Total energy + Delta-G solvation = -3506.300731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23204 -40.49794 -38.87172 -37.81075 -35.93569 -33.41571 -32.45712 -31.10701 -30.27375 -29.58699 -28.04629 -25.51604 -24.11745 -23.64551 -22.31937 -21.61615 -20.50291 -19.33506 -18.55537 -18.13447 -17.44365 -17.20178 -17.12012 -16.58523 -16.33371 -15.91207 -15.64775 -15.37500 -15.03588 -14.72241 -14.28612 -14.11473 -13.74920 -13.58946 -13.23284 -13.15409 -13.13156 -12.94934 -12.74633 -12.64761 -12.38130 -12.36211 -12.13954 -11.77398 -11.70344 -11.67571 -10.97759 -10.93921 -10.92299 -10.47240 -9.73953 -9.05028 -7.94655 -5.25460 1.49125 1.49922 1.52628 1.57824 1.60153 2.56425 2.74262 2.98889 3.35548 3.43976 3.54387 3.75259 3.85161 3.87699 4.01075 4.04403 4.12128 4.21475 4.26046 4.28171 4.37981 4.42443 4.51779 4.55728 4.67974 4.74474 4.81217 4.85038 4.90058 4.99856 5.05318 5.15657 5.26286 5.45350 5.54120 5.82328 6.08324 6.25558 6.48005 7.06569 7.31672 8.03808 8.27076 9.28847 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.002612 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.371644 B =10715.246571 C =10761.074869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.086 0.914 9 N -0.733 5.733 10 C 0.165 3.835 11 H 0.072 0.928 12 C -0.146 4.146 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.516 3.484 16 O -0.584 6.584 17 C 0.055 3.945 18 O -0.385 6.385 19 C 0.050 3.950 20 H 0.117 0.883 21 C -0.154 4.154 22 C 0.044 3.956 23 O -0.406 6.406 24 C 0.020 3.980 25 C 0.110 3.890 26 H 0.250 0.750 27 H 0.370 0.630 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -24.727 7.918 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.104 0.896 9 N -0.373 5.373 10 C 0.055 3.945 11 H 0.090 0.910 12 C -0.187 4.187 13 C -0.019 4.019 14 N -0.346 5.346 15 C 0.306 3.694 16 O -0.464 6.464 17 C -0.024 4.024 18 O -0.304 6.304 19 C -0.007 4.007 20 H 0.135 0.865 21 C -0.192 4.192 22 C -0.031 4.031 23 O -0.326 6.326 24 C -0.057 4.057 25 C -0.014 4.014 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.261 -24.822 7.411 27.510 hybrid contribution -0.368 1.491 -0.262 1.558 sum 8.893 -23.331 7.148 25.971 Atomic orbital electron populations 1.69833 1.06888 1.26188 1.59447 1.25633 0.96309 1.01395 1.03694 0.85170 0.77076 0.78885 0.78359 1.20330 1.22786 1.19891 1.19608 0.91710 0.84598 1.41086 0.89629 1.42563 1.05344 1.00827 1.88550 1.21395 0.93734 0.83750 0.95579 0.91031 1.23369 1.02676 0.94355 0.98252 1.22678 0.90878 0.95231 0.93106 1.48484 1.39849 1.09594 1.36681 1.20783 0.80926 0.82994 0.84700 1.90710 1.33755 1.82656 1.39259 1.22372 0.97774 0.84070 0.98180 1.88093 1.62975 1.19828 1.59471 1.23879 1.00296 0.86009 0.90566 0.86483 1.23275 1.03483 0.93392 0.99015 1.23760 0.95494 0.92391 0.91489 1.88875 1.43357 1.24905 1.75466 1.23860 0.95203 0.88102 0.98565 1.21984 0.99158 0.85705 0.94599 0.94095 0.79764 0.92623 0.88872 0.87475 0.88014 0.87358 0.86089 0.91457 0.86767 0.89369 0.87849 0.89020 0.90799 0.92049 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -12.64 9.98 84.03 0.84 -11.80 16 8 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -35.88 5.26 -317.30 -1.67 -37.55 16 10 C 0.16 6.02 3.57 46.18 0.17 6.19 16 11 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 12 C -0.15 -4.13 6.77 31.99 0.22 -3.91 16 13 C 0.10 1.99 6.69 86.85 0.58 2.57 16 14 N -0.61 -17.31 3.33 -811.79 -2.70 -20.01 16 15 C 0.52 15.60 7.93 87.66 0.69 16.30 16 16 O -0.58 -24.44 16.83 16.02 0.27 -24.17 16 17 C 0.05 1.01 5.27 71.24 0.38 1.39 16 18 O -0.38 -9.05 9.50 -129.94 -1.23 -10.28 16 19 C 0.05 0.73 3.52 31.59 0.11 0.84 16 20 H 0.12 0.81 7.84 -2.39 -0.02 0.80 16 21 C -0.15 -2.09 6.90 31.89 0.22 -1.87 16 22 C 0.04 0.56 7.72 72.66 0.56 1.12 16 23 O -0.41 -8.32 11.52 -148.98 -1.72 -10.04 16 24 C 0.02 0.32 7.52 72.35 0.54 0.87 16 25 C 0.11 3.92 6.63 86.73 0.57 4.49 16 26 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.37 20.19 7.53 -92.71 -0.70 19.50 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.11 1.35 7.48 -2.39 -0.02 1.34 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.39 7.85 -2.38 -0.02 1.37 16 33 H 0.12 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.70 7.70 -2.39 -0.02 1.68 16 Total: -1.00 -78.50 340.31 0.94 -77.56 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.32 Total: 24.51 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.35 Total: 12.25 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.08 Total: -116.80 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -2.68 Total: -44.49 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.50 0.94 -77.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018836804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.017 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds