Wall clock time and date at job start Tue Mar 31 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81406 * 103.00065 * 2 1 4 4 H 1.08997 * 109.46694 * 305.00103 * 3 2 1 5 5 C 1.53005 * 109.46813 * 64.99853 * 3 2 1 6 6 C 1.50698 * 109.47100 * 184.99793 * 3 2 1 7 7 O 1.21279 * 120.00345 * 340.00022 * 6 3 2 8 8 N 1.34780 * 119.99752 * 160.00270 * 6 3 2 9 9 C 1.46628 * 134.54655 * 359.54194 * 8 6 3 10 10 C 1.54649 * 85.47887 * 153.48330 * 9 8 6 11 11 H 1.09003 * 114.43685 * 140.46172 * 10 9 8 12 12 C 1.53008 * 111.41405 * 270.79681 * 10 9 8 13 13 C 1.52795 * 109.28067 * 144.54216 * 12 10 9 14 14 N 1.46618 * 107.63403 * 300.17357 * 13 12 10 15 15 C 1.36938 * 119.88878 * 238.22719 * 14 13 12 16 16 H 1.08001 * 119.99986 * 150.67543 * 15 14 13 17 17 C 1.38808 * 120.00112 * 330.66834 * 15 14 13 18 18 N 1.31625 * 120.00158 * 335.03544 * 17 15 14 19 19 Si 1.86798 * 120.00149 * 155.03525 * 17 15 14 20 20 H 1.48496 * 109.47127 * 90.00344 * 19 17 15 21 21 H 1.48495 * 109.47027 * 330.00068 * 19 17 15 22 22 H 1.48508 * 109.47175 * 210.00616 * 19 17 15 23 23 C 1.45680 * 120.22009 * 57.95200 * 14 13 12 24 24 C 1.46815 * 135.01380 * 180.02562 * 8 6 3 25 25 H 1.09000 * 111.56198 * 95.11223 * 24 8 6 26 26 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47597 * 299.99884 * 1 2 3 28 28 H 1.08999 * 109.47193 * 59.99986 * 1 2 3 29 29 H 1.09004 * 109.47088 * 300.00291 * 5 3 2 30 30 H 1.09003 * 109.46974 * 60.00293 * 5 3 2 31 31 H 1.08997 * 109.46717 * 180.02562 * 5 3 2 32 32 H 1.08999 * 113.37831 * 39.45312 * 9 8 6 33 33 H 1.08996 * 114.62461 * 267.65536 * 9 8 6 34 34 H 1.09000 * 109.47904 * 264.17452 * 12 10 9 35 35 H 1.09000 * 109.47487 * 24.18997 * 12 10 9 36 36 H 1.09002 * 109.19320 * 181.08222 * 13 12 10 37 37 H 1.08997 * 110.68102 * 60.11196 * 13 12 10 38 38 H 0.96997 * 119.99769 * 354.27959 * 18 17 15 39 39 H 1.08994 * 108.71670 * 82.01705 * 23 14 13 40 40 H 1.09005 * 108.71626 * 200.04479 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 3.7141 1.9386 -0.1238 7 8 4.4551 1.0200 0.1556 8 7 4.2252 3.1125 -0.5449 9 6 3.6489 4.3941 -0.9636 10 6 4.9880 5.0098 -0.4952 11 1 5.3690 5.8032 -1.1384 12 6 4.9376 5.3974 0.9841 13 6 6.3057 5.1495 1.6175 14 7 6.6129 3.7237 1.4676 15 6 6.8570 2.9580 2.5764 16 1 6.6205 1.9042 2.5677 17 6 7.4085 3.5361 3.7114 18 7 8.1357 4.6282 3.6067 19 14 7.1187 2.7643 5.3876 20 1 8.1924 1.7783 5.6709 21 1 5.8019 2.0781 5.3956 22 1 7.1315 3.8230 6.4290 23 6 6.6533 3.1176 0.1435 24 6 5.5783 3.6309 -0.7811 25 1 5.8702 3.5275 -1.8261 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.6634 2.2778 1.3969 30 1 2.2353 1.9149 2.1492 31 1 1.9875 3.4637 1.3072 32 1 2.7909 4.6988 -0.3645 33 1 3.4738 4.4847 -2.0356 34 1 4.6855 6.4540 1.0746 35 1 4.1810 4.7985 1.4910 36 1 6.2629 5.4079 2.6756 37 1 7.0726 5.7455 1.1229 38 1 8.3556 4.9823 2.7308 39 1 7.6259 3.3206 -0.3045 40 1 6.5379 2.0388 0.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084196769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:05 Heat of formation + Delta-G solvation = 5.113089 kcal Electronic energy + Delta-G solvation = -21709.689768 eV Core-core repulsion = 18651.852577 eV Total energy + Delta-G solvation = -3057.837191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.06769 -39.43600 -37.42464 -34.55636 -33.53615 -32.69076 -30.28031 -29.55303 -28.54432 -25.84797 -25.59627 -24.42528 -22.74472 -21.29175 -19.74039 -18.97190 -18.07093 -17.80292 -17.09531 -16.52340 -16.19448 -15.91484 -15.47193 -15.42245 -15.16863 -14.85856 -14.63659 -14.35332 -14.04665 -13.84892 -13.58002 -13.35339 -13.24085 -12.98222 -12.92661 -12.76050 -12.61139 -12.40937 -12.00731 -11.95561 -11.77732 -11.54970 -11.20606 -10.83817 -10.57748 -10.51367 -9.65794 -8.91338 -8.77247 -8.28531 -5.43012 0.42135 1.50276 1.53177 1.57261 1.67513 1.77217 1.87056 2.58779 3.14714 3.26146 3.37576 3.53581 3.74140 3.85523 3.91746 4.05233 4.25370 4.29156 4.33632 4.35768 4.42419 4.47110 4.55513 4.58574 4.63841 4.68757 4.84216 4.89001 4.97521 5.01668 5.05765 5.13098 5.14761 5.26894 5.56236 5.83172 6.38983 6.75612 7.08650 7.13049 7.79225 8.15143 8.95294 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.006323 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.997791 B = 4427.159758 C = 5366.969778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.278 6.278 3 C -0.062 4.062 4 H 0.137 0.863 5 C -0.134 4.134 6 C 0.541 3.459 7 O -0.575 6.575 8 N -0.630 5.630 9 C 0.109 3.891 10 C -0.100 4.100 11 H 0.127 0.873 12 C -0.106 4.106 13 C 0.150 3.850 14 N -0.604 5.604 15 C -0.348 4.348 16 H 0.019 0.981 17 C -0.066 4.066 18 N -0.934 5.934 19 Si 1.107 2.893 20 H -0.285 1.285 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.145 3.855 24 C 0.122 3.878 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.256 0.744 39 H 0.010 0.990 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.903 2.796 -12.180 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.053 6.053 3 C -0.194 4.194 4 H 0.155 0.845 5 C -0.192 4.192 6 C 0.329 3.671 7 O -0.455 6.455 8 N -0.365 5.365 9 C -0.012 4.012 10 C -0.118 4.118 11 H 0.145 0.855 12 C -0.145 4.145 13 C 0.025 3.975 14 N -0.329 5.329 15 C -0.478 4.478 16 H 0.037 0.963 17 C -0.263 4.263 18 N -0.576 5.576 19 Si 0.932 3.068 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.201 1.201 23 C 0.018 3.982 24 C 0.018 3.982 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.668 1.416 -10.358 20.530 hybrid contribution -0.232 0.170 -1.427 1.455 sum -17.900 1.586 -11.785 21.490 Atomic orbital electron populations 1.23570 0.90589 1.07805 1.06413 1.87830 1.10417 1.08982 1.98077 1.23166 0.94654 0.96769 1.04783 0.84546 1.21934 1.02894 1.01124 0.93294 1.19950 0.89799 0.80715 0.76617 1.90720 1.62071 1.41413 1.51264 1.49683 1.10083 1.12251 1.64529 1.23675 0.97160 0.77983 1.02374 1.22894 0.96196 0.95425 0.97328 0.85476 1.21679 0.97217 1.01272 0.94337 1.20774 0.94153 0.83595 0.98962 1.43719 1.81704 1.06366 1.01084 1.19981 1.39318 0.93569 0.94966 0.96283 1.26959 0.94551 0.99164 1.05600 1.70868 1.34399 1.25689 1.26621 0.82967 0.76093 0.74997 0.72709 1.21174 1.21474 1.20107 1.20139 0.95107 0.96621 0.86314 1.22526 0.83970 0.92765 0.98983 0.87225 0.86778 0.89101 0.88529 0.88157 0.94137 0.90391 0.88282 0.85576 0.89080 0.93766 0.93680 0.96287 0.93377 0.97281 0.95123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 10.45 113.37 1.18 -0.56 16 2 S -0.28 -7.97 21.04 -56.49 -1.19 -9.16 16 3 C -0.06 -1.65 2.93 29.85 0.09 -1.56 16 4 H 0.14 2.52 8.11 -2.39 -0.02 2.50 16 5 C -0.13 -3.20 9.08 71.98 0.65 -2.54 16 6 C 0.54 20.00 7.16 87.66 0.63 20.63 16 7 O -0.58 -28.47 15.16 -3.03 -0.05 -28.51 16 8 N -0.63 -19.66 3.26 -843.01 -2.75 -22.41 16 9 C 0.11 2.03 7.90 86.56 0.68 2.71 16 10 C -0.10 -2.49 4.34 -10.27 -0.04 -2.53 16 11 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 12 C -0.11 -3.47 5.65 30.53 0.17 -3.29 16 13 C 0.15 6.92 4.67 86.29 0.40 7.32 16 14 N -0.60 -32.16 2.83 -708.36 -2.00 -34.16 16 15 C -0.35 -21.52 9.41 84.03 0.79 -20.73 16 16 H 0.02 1.30 7.90 -2.91 -0.02 1.28 16 17 C -0.07 -3.97 4.65 84.86 0.39 -3.57 16 18 N -0.93 -58.12 12.37 21.65 0.27 -57.85 16 19 Si 1.11 55.00 29.99 68.60 2.06 57.06 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 C 0.14 6.80 6.17 85.82 0.53 7.33 16 24 C 0.12 4.03 4.29 43.76 0.19 4.22 16 25 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.15 7.14 -2.39 -0.02 1.14 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.64 6.92 -2.39 -0.02 1.63 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.73 7.49 -2.39 -0.02 1.71 16 32 H 0.10 1.49 7.36 -2.39 -0.02 1.47 16 33 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 36 H 0.04 2.40 6.16 -2.39 -0.01 2.39 16 37 H 0.02 0.87 7.99 -2.39 -0.02 0.85 16 38 H 0.26 16.10 6.85 -92.71 -0.63 15.47 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.03 1.68 6.33 -2.38 -0.02 1.67 16 Total: -1.00 -84.65 327.78 3.16 -81.49 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.15 Total: 6.13 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.67 Total: 7.42 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.48 Total: -114.42 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.05 Total: -28.51 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.06 Total: 57.06 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.19 Total: -9.16 kcal Total: -84.65 3.16 -81.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084196769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.601 kcal (2) G-P(sol) polarization free energy of solvation -84.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds