Wall clock time and date at job start Tue Mar 31 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99590 * 3 2 1 5 5 H 1.48502 * 109.47431 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46984 * 119.99977 * 3 2 1 7 7 C 1.38811 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99113 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00180 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47255 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47022 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99952 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99761 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99703 * 180.02562 * 14 13 12 17 17 N 1.46504 * 109.46603 * 180.02562 * 16 14 13 18 18 C 1.47308 * 126.69390 * 270.29480 * 17 16 14 19 19 C 1.51579 * 103.59774 * 180.02562 * 18 17 16 20 20 O 1.21233 * 127.16311 * 179.97438 * 19 18 17 21 21 N 1.34773 * 105.68013 * 359.65777 * 19 18 17 22 22 C 1.33795 * 111.64536 * 0.22635 * 21 19 18 23 23 O 1.21531 * 123.76756 * 179.97438 * 22 21 19 24 24 H 0.97008 * 119.99981 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99376 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47290 * 59.99282 * 10 9 7 27 27 H 1.08998 * 109.47172 * 300.00141 * 10 9 7 28 28 H 1.08999 * 109.46907 * 59.99608 * 11 10 9 29 29 H 1.09003 * 109.47142 * 299.99819 * 11 10 9 30 30 H 1.08999 * 109.47438 * 59.99989 * 12 11 10 31 31 H 1.08993 * 109.47410 * 299.99748 * 12 11 10 32 32 H 0.96996 * 120.00258 * 0.02562 * 13 12 11 33 33 H 1.09001 * 109.47164 * 60.00785 * 16 14 13 34 34 H 1.08993 * 109.47070 * 300.00472 * 16 14 13 35 35 H 1.08999 * 110.69646 * 61.50423 * 18 17 16 36 36 H 1.09002 * 110.50179 * 298.56348 * 18 17 16 37 37 H 0.97003 * 124.17604 * 180.26125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 7 0.8768 -7.2582 0.0018 14 6 1.3260 -8.5289 0.0009 15 8 2.5184 -8.7505 -0.0003 16 6 0.3467 -9.6743 0.0016 17 7 1.0792 -10.9431 0.0011 18 6 1.5238 -11.7023 -1.1803 19 6 2.2182 -12.9116 -0.5862 20 8 2.7463 -13.8220 -1.1880 21 7 2.1327 -12.7607 0.7503 22 6 1.4832 -11.6383 1.0796 23 8 1.2805 -11.2864 2.2251 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6847 -3.7145 0.8905 27 1 2.6846 -3.7145 -0.8894 28 1 0.4368 -4.7621 -0.8885 29 1 0.4375 -4.7618 0.8914 30 1 2.4561 -6.2025 0.8900 31 1 2.4547 -6.2024 -0.8899 32 1 -0.0769 -7.0810 0.0024 33 1 -0.2808 -9.6164 -0.8878 34 1 -0.2791 -9.6168 0.8922 35 1 2.2222 -11.1142 -1.7758 36 1 0.6679 -12.0077 -1.7821 37 1 2.4974 -13.3881 1.3940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168606057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:32 Heat of formation + Delta-G solvation = -97.656616 kcal Electronic energy + Delta-G solvation = -21251.507229 eV Core-core repulsion = 17642.920394 eV Total energy + Delta-G solvation = -3608.586835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.27413 -40.69303 -39.68061 -37.57433 -37.25827 -35.92282 -35.46060 -33.76920 -31.62060 -30.16645 -28.10688 -26.68758 -24.48321 -23.36077 -22.72850 -22.54532 -21.22314 -19.34213 -19.17907 -18.56683 -17.79923 -17.48642 -17.20442 -16.97978 -16.69057 -16.51622 -15.82208 -15.62686 -15.40517 -15.26873 -15.08562 -15.01922 -14.60304 -13.99878 -13.96755 -13.29189 -13.09073 -12.77921 -12.59893 -12.41908 -12.17990 -12.09830 -12.01849 -11.79782 -11.50321 -11.45587 -11.30258 -10.93504 -10.10123 -10.04654 -9.01623 -7.96529 -5.25503 0.55712 1.09994 1.48084 1.50844 1.57034 1.59611 1.86881 1.99395 2.34941 2.57046 3.05736 3.37153 3.75484 3.78044 3.79354 4.11042 4.27936 4.31102 4.35217 4.41285 4.47394 4.68074 4.75081 4.76014 4.89433 5.03273 5.19202 5.30154 5.33523 5.43827 5.48783 5.91938 6.26408 6.31308 6.55922 6.99213 7.24318 7.32967 8.07959 8.31773 9.26603 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.051898 B = 0.002195 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.386050 B =12752.441242 C =12855.380317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.747 5.747 10 C 0.150 3.850 11 C -0.118 4.118 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.485 3.515 15 O -0.584 6.584 16 C 0.137 3.863 17 N -0.605 5.605 18 C 0.070 3.930 19 C 0.532 3.468 20 O -0.504 6.504 21 N -0.675 5.675 22 C 0.701 3.299 23 O -0.583 6.583 24 H 0.253 0.747 25 H 0.377 0.623 26 H 0.017 0.983 27 H 0.022 0.978 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.177 0.823 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.172 0.828 37 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -26.744 -3.737 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.023 3.977 11 C -0.156 4.156 12 C 0.010 3.990 13 N -0.365 5.365 14 C 0.271 3.729 15 O -0.464 6.464 16 C 0.012 3.988 17 N -0.342 5.342 18 C -0.055 4.055 19 C 0.320 3.680 20 O -0.376 6.376 21 N -0.344 5.344 22 C 0.402 3.598 23 O -0.460 6.460 24 H 0.061 0.939 25 H 0.209 0.791 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.194 0.806 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.189 0.811 37 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.323 -26.919 -3.550 27.251 hybrid contribution 0.216 0.989 0.621 1.188 sum -2.107 -25.930 -2.930 26.180 Atomic orbital electron populations 1.69793 1.06481 1.26279 1.59210 1.25578 0.96498 1.01118 1.03504 0.85206 0.77244 0.79090 0.78181 1.20339 1.21911 1.20536 1.19595 0.91513 0.85495 1.41687 0.90876 1.42528 1.05764 1.01129 1.89549 1.20690 0.94223 0.84953 0.97784 1.21694 0.98386 0.92005 1.03483 1.21031 0.91797 0.84636 1.01583 1.45856 1.11469 1.04810 1.74374 1.21928 0.90362 0.85265 0.75355 1.90724 1.19108 1.85335 1.51196 1.21487 0.91219 0.76175 1.09900 1.47121 1.58654 1.22673 1.05738 1.22798 1.03454 0.89732 0.89485 1.21144 0.77642 0.87154 0.82028 1.90861 1.43689 1.36494 1.66536 1.44304 1.54369 1.24501 1.11230 1.15988 0.78162 0.80419 0.85198 1.91009 1.61916 1.72457 1.20598 0.93859 0.79130 0.96504 0.96000 0.90152 0.90815 0.92928 0.91784 0.74199 0.80612 0.84752 0.84897 0.81069 0.72011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.75 -37.23 5.60 -343.47 -1.92 -39.15 16 10 C 0.15 5.74 6.26 86.38 0.54 6.29 16 11 C -0.12 -3.16 5.44 30.59 0.17 -3.00 16 12 C 0.13 3.16 5.67 86.38 0.49 3.65 16 13 N -0.71 -11.61 5.56 -463.06 -2.57 -14.18 16 14 C 0.48 8.77 7.90 87.66 0.69 9.46 16 15 O -0.58 -16.67 16.43 -3.03 -0.05 -16.72 16 16 C 0.14 1.09 6.63 85.63 0.57 1.66 16 17 N -0.60 -7.26 2.51 -846.26 -2.12 -9.38 16 18 C 0.07 0.47 7.66 85.76 0.66 1.13 16 19 C 0.53 7.02 8.81 87.94 0.77 7.80 16 20 O -0.50 -9.80 18.02 -2.88 -0.05 -9.85 16 21 N -0.67 -9.60 5.70 -441.12 -2.52 -12.11 16 22 C 0.70 13.08 8.68 179.44 1.56 14.64 16 23 O -0.58 -15.81 17.71 -3.81 -0.07 -15.88 16 24 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 25 H 0.38 19.52 7.67 -92.71 -0.71 18.81 16 26 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.42 3.90 8.47 -92.71 -0.79 3.11 16 33 H 0.18 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.13 0.89 8.03 -2.39 -0.02 0.87 16 35 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.44 5.02 8.96 -92.71 -0.83 4.19 16 Total: -1.00 -84.87 330.56 -1.43 -86.31 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -1.19 Total: 16.45 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 6.75 Total: 24.67 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -8.85 Total: -132.74 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.17 Total: -42.45 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -84.87 -1.43 -86.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168606057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.350 kcal (2) G-P(sol) polarization free energy of solvation -84.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds