Wall clock time and date at job start Tue Mar 31 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99857 * 2 1 4 4 N 1.46901 * 109.46900 * 125.17884 * 3 2 1 5 5 C 1.46194 * 111.00583 * 65.99945 * 4 3 2 6 6 C 1.51272 * 109.09940 * 144.75773 * 5 4 3 7 7 C 1.53828 * 109.63699 * 92.40448 * 6 5 4 8 8 N 1.47612 * 111.29002 * 319.98547 * 7 6 5 9 9 C 1.34775 * 118.75189 * 138.30738 * 8 7 6 10 10 O 1.21274 * 120.00563 * 179.97438 * 9 8 7 11 11 C 1.50706 * 119.99303 * 359.97438 * 9 8 7 12 12 S 1.81006 * 109.46631 * 179.97438 * 11 9 8 13 13 C 1.76198 * 100.00086 * 179.97438 * 12 11 9 14 14 H 1.08009 * 119.99700 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00437 * 179.97438 * 13 12 11 16 16 N 1.31629 * 119.99421 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00332 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47035 * 60.00466 * 17 15 13 19 19 H 1.48503 * 109.47468 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47086 * 300.00591 * 17 15 13 21 21 C 1.44883 * 122.50188 * 318.28428 * 8 7 6 22 22 C 1.41448 * 110.99737 * 294.96122 * 4 3 2 23 23 H 1.08000 * 119.99615 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00154 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99434 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47422 * 5.17952 * 3 2 1 27 27 H 1.09004 * 109.46787 * 245.17113 * 3 2 1 28 28 H 1.09004 * 109.53654 * 264.65214 * 5 4 3 29 29 H 1.09008 * 109.52761 * 24.87595 * 5 4 3 30 30 H 1.09000 * 109.44488 * 212.46271 * 6 5 4 31 31 H 1.08995 * 109.44283 * 332.36501 * 6 5 4 32 32 H 1.09003 * 109.12838 * 199.51493 * 7 6 5 33 33 H 1.09008 * 109.06376 * 80.41241 * 7 6 5 34 34 H 1.09000 * 109.47465 * 299.99734 * 11 9 8 35 35 H 1.08991 * 109.47269 * 60.00192 * 11 9 8 36 36 H 0.97008 * 119.99971 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.44023 * 329.67590 * 21 8 7 38 38 H 1.09004 * 109.43358 * 209.80853 * 21 8 7 39 39 H 1.08994 * 109.38498 * 311.84934 * 22 4 3 40 40 H 1.09003 * 109.38485 * 71.53973 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9994 1.3302 1.1321 5 6 4.0464 0.3230 0.9688 6 6 5.3439 0.8627 1.5287 7 6 5.4858 0.4425 3.0017 8 7 4.1948 0.5336 3.7117 9 6 3.8552 -0.4501 4.5682 10 8 2.8002 -0.3980 5.1640 11 6 4.7867 -1.6147 4.7855 12 16 4.0545 -2.7574 5.9832 13 6 5.3160 -3.9860 6.0447 14 1 6.2051 -3.8777 5.4410 15 6 5.1677 -5.0924 6.8695 16 7 4.0844 -5.2240 7.6054 17 14 6.5054 -6.3945 6.9351 18 1 7.7765 -5.7758 7.3900 19 1 6.1080 -7.4651 7.8844 20 1 6.6951 -6.9779 5.5828 21 6 3.2791 1.6404 3.5233 22 6 2.3048 1.3195 2.3642 23 1 -0.5399 0.9353 0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3589 2.1315 0.0928 27 1 2.6189 1.4040 -0.9327 28 1 3.7669 -0.5836 1.5055 29 1 4.1725 0.0969 -0.0901 30 1 6.1805 0.4635 0.9553 31 1 5.3440 1.9505 1.4603 32 1 6.2090 1.0948 3.4912 33 1 5.8455 -0.5856 3.0456 34 1 4.9476 -2.1327 3.8400 35 1 5.7405 -1.2508 5.1673 36 1 3.9805 -5.9975 8.1817 37 1 3.8436 2.5415 3.2837 38 1 2.7116 1.8017 4.4399 39 1 1.5128 2.0680 2.3395 40 1 1.8652 0.3349 2.5232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194912719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:36 Heat of formation + Delta-G solvation = -23.345636 kcal Electronic energy + Delta-G solvation = -20648.600388 eV Core-core repulsion = 17589.529134 eV Total energy + Delta-G solvation = -3059.071254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44530 -39.47992 -36.80624 -34.60260 -34.12520 -33.63175 -31.44974 -29.01141 -27.67068 -27.32350 -25.63839 -23.31209 -22.06078 -20.42333 -20.38797 -19.44576 -18.18268 -17.41866 -17.07573 -16.89392 -16.67093 -16.42667 -15.97522 -15.54364 -15.17071 -14.68419 -14.59404 -14.49064 -14.29458 -13.75411 -13.38461 -13.21633 -13.09746 -12.88580 -12.79878 -12.68814 -12.50697 -12.25755 -12.21900 -11.84985 -11.78061 -11.67210 -11.14179 -10.86218 -10.39526 -10.28591 -9.68185 -9.20940 -8.69883 -8.35799 -6.14933 1.24707 1.27816 1.43040 1.45037 1.54682 1.55960 2.13354 2.26487 2.98251 2.99703 3.23437 3.67607 3.81968 3.89201 4.04374 4.11274 4.15054 4.19751 4.28349 4.35449 4.40867 4.48864 4.59868 4.64382 4.74825 4.81719 4.88657 4.89547 4.97512 5.04255 5.14488 5.29870 5.39444 5.60308 5.69025 5.72950 6.14374 6.17925 6.22626 6.40706 7.04984 7.15157 8.73345 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.003954 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.489202 B = 7079.245625 C = 7269.545152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.205 4.205 3 C 0.091 3.909 4 N -0.547 5.547 5 C 0.068 3.932 6 C -0.118 4.118 7 C 0.096 3.904 8 N -0.599 5.599 9 C 0.525 3.475 10 O -0.566 6.566 11 C -0.122 4.122 12 S -0.154 6.154 13 C -0.547 4.547 14 H 0.083 0.917 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.262 1.262 21 C 0.119 3.881 22 C 0.069 3.931 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.012 0.988 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.095 0.905 40 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.580 15.540 -18.349 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.225 4.225 3 C -0.035 4.035 4 N -0.270 5.270 5 C -0.060 4.060 6 C -0.156 4.156 7 C -0.025 4.025 8 N -0.333 5.333 9 C 0.312 3.688 10 O -0.444 6.444 11 C -0.273 4.273 12 S 0.073 5.927 13 C -0.695 4.695 14 H 0.101 0.899 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.004 4.004 22 C -0.061 4.061 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.030 0.970 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 1.199 15.974 -17.354 23.617 hybrid contribution 0.940 -2.044 -0.099 2.252 sum 2.139 13.930 -17.453 22.433 Atomic orbital electron populations 1.24013 0.95970 1.02501 0.99468 1.23795 0.97197 1.00204 1.01276 1.21462 0.94315 0.93637 0.94108 1.58797 1.15189 1.50770 1.02213 1.21587 0.91595 0.91709 1.01082 1.21841 0.97454 1.03339 0.93011 1.22358 0.83039 1.03279 0.93841 1.47868 1.21353 1.21730 1.42345 1.20227 0.86118 0.83513 0.78925 1.90666 1.26105 1.78043 1.49631 1.23380 1.02230 0.97764 1.03927 1.85591 1.30657 1.22221 1.54229 1.23156 1.06442 1.08779 1.31086 0.89938 1.26138 0.99001 1.00100 0.93803 1.70186 1.28501 1.30226 1.25911 0.84999 0.77626 0.76673 0.78675 1.18503 1.20357 1.18626 1.21607 0.91858 0.89247 0.97681 1.21520 0.95912 0.99264 0.89429 0.86919 0.89065 0.89212 0.89284 0.88275 0.96972 0.89361 0.87740 0.89050 0.89537 0.90232 0.87982 0.87541 0.91975 0.87188 0.91440 0.88734 0.98679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 14.32 67.78 0.97 -2.41 16 2 C -0.20 -4.02 8.12 25.64 0.21 -3.81 16 3 C 0.09 1.43 5.54 85.56 0.47 1.90 16 4 N -0.55 -10.14 4.00 -916.17 -3.67 -13.81 16 5 C 0.07 1.25 4.47 85.87 0.38 1.63 16 6 C -0.12 -1.69 5.78 30.31 0.18 -1.52 16 7 C 0.10 1.89 5.99 86.45 0.52 2.41 16 8 N -0.60 -16.80 2.18 -817.81 -1.79 -18.59 16 9 C 0.52 20.66 7.65 87.66 0.67 21.33 16 10 O -0.57 -27.47 15.29 -3.01 -0.05 -27.52 16 11 C -0.12 -5.06 4.49 71.24 0.32 -4.74 16 12 S -0.15 -8.79 20.57 -56.49 -1.16 -9.95 16 13 C -0.55 -31.63 9.50 67.95 0.65 -30.98 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.82 5.49 84.86 0.47 1.29 16 16 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 17 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 C 0.12 2.93 5.51 87.29 0.48 3.41 16 22 C 0.07 1.62 4.98 87.91 0.44 2.06 16 23 H 0.11 1.70 7.84 -2.91 -0.02 1.68 16 24 H 0.09 1.74 8.06 -2.91 -0.02 1.72 16 25 H 0.09 2.03 7.77 -2.91 -0.02 2.00 16 26 H 0.09 1.20 7.60 -2.39 -0.02 1.19 16 27 H 0.10 1.22 7.90 -2.38 -0.02 1.20 16 28 H 0.01 0.31 7.32 -2.39 -0.02 0.29 16 29 H 0.09 1.32 7.55 -2.38 -0.02 1.30 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.18 7.98 -2.39 -0.02 1.16 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.67 5.87 -2.38 -0.01 1.65 16 34 H 0.10 3.90 7.41 -2.39 -0.02 3.88 16 35 H 0.11 4.00 8.04 -2.40 -0.02 3.98 16 36 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.11 2.05 8.11 -2.39 -0.02 2.03 16 38 H 0.07 1.96 7.28 -2.38 -0.02 1.94 16 39 H 0.09 1.90 7.86 -2.39 -0.02 1.88 16 40 H 0.00 -0.16 7.52 -2.39 -0.02 -0.18 16 Total: -1.00 -76.29 334.51 2.41 -73.88 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.00 Total: 16.01 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.75 Total: -9.43 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -5.16 Total: -88.75 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -76.29 2.41 -73.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194912719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.532 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds