Wall clock time and date at job start Tue Mar 31 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64792 * 0.02562 * 9 7 2 11 11 C 1.54914 * 104.83159 * 204.08975 * 10 9 7 12 12 C 1.55151 * 101.58023 * 322.99181 * 11 10 9 13 13 H 1.08995 * 110.72026 * 276.95828 * 12 11 10 14 14 O 1.42907 * 110.71895 * 153.86196 * 12 11 10 15 15 C 1.42902 * 113.99938 * 149.99886 * 14 12 11 16 16 C 1.50699 * 109.46918 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00156 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99793 * 179.97438 * 16 15 14 19 19 C 1.47157 * 120.98337 * 359.71830 * 18 16 15 20 20 C 1.53707 * 108.16388 * 129.43293 * 19 18 16 21 21 O 1.42961 * 109.14969 * 52.53708 * 20 19 18 22 22 C 1.42965 * 114.16510 * 297.29157 * 21 20 19 23 23 C 1.47149 * 120.98360 * 180.02562 * 18 16 15 24 24 C 1.47020 * 125.64525 * 179.71622 * 9 7 2 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.36700 * 322.93272 * 10 9 7 27 27 H 1.08998 * 110.36896 * 85.14511 * 10 9 7 28 28 H 1.09002 * 111.00120 * 81.06703 * 11 10 9 29 29 H 1.08990 * 111.00564 * 204.87622 * 11 10 9 30 30 H 1.09008 * 109.46981 * 300.00280 * 15 14 12 31 31 H 1.08997 * 109.46799 * 60.00000 * 15 14 12 32 32 H 1.08997 * 109.68263 * 249.21110 * 19 18 16 33 33 H 1.08997 * 109.68186 * 9.76463 * 19 18 16 34 34 H 1.09008 * 109.65776 * 292.57541 * 20 19 18 35 35 H 1.09000 * 109.44917 * 172.37569 * 20 19 18 36 36 H 1.09000 * 109.51713 * 302.65338 * 22 21 20 37 37 H 1.09004 * 109.51306 * 182.50317 * 22 21 20 38 38 H 1.09000 * 109.68009 * 350.23600 * 23 18 16 39 39 H 1.09004 * 109.68401 * 110.74808 * 23 18 16 40 40 H 1.09001 * 109.88406 * 298.39096 * 24 9 7 41 41 H 1.09001 * 109.88743 * 59.55748 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0005 11 6 -0.4019 -3.9324 0.6111 12 6 0.7785 -4.7524 0.0269 13 1 0.5455 -5.1006 -0.9793 14 8 1.1000 -5.8535 0.8792 15 6 1.6317 -6.9865 0.1895 16 6 1.9325 -8.0817 1.1800 17 8 1.7127 -7.9093 2.3602 18 7 2.4448 -9.2533 0.7541 19 6 2.7131 -9.4884 -0.6736 20 6 4.1534 -10.0072 -0.8114 21 8 4.3346 -11.1255 0.0607 22 6 4.1804 -10.8167 1.4481 23 6 2.7461 -10.3376 1.7021 24 6 1.9319 -3.7274 -0.0048 25 1 -0.4850 0.8401 0.0004 26 1 -0.5997 -1.7588 0.6147 27 1 -0.5267 -2.4849 -1.0190 28 1 -0.3531 -3.8982 1.6995 29 1 -1.3593 -4.3325 0.2775 30 1 0.9025 -7.3445 -0.5373 31 1 2.5484 -6.7005 -0.3261 32 1 2.0144 -10.2297 -1.0612 33 1 2.6033 -8.5554 -1.2263 34 1 4.8549 -9.2177 -0.5414 35 1 4.3309 -10.3163 -1.8414 36 1 4.8819 -10.0302 1.7262 37 1 4.3771 -11.7083 2.0435 38 1 2.6582 -9.9672 2.7235 39 1 2.0501 -11.1626 1.5497 40 1 2.5253 -3.8621 -0.9092 41 1 2.5614 -3.8530 0.8761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210260920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:38 Heat of formation + Delta-G solvation = -106.528161 kcal Electronic energy + Delta-G solvation = -22733.156487 eV Core-core repulsion = 19227.725297 eV Total energy + Delta-G solvation = -3505.431190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44230 -39.95742 -39.19303 -37.40424 -35.88652 -34.21563 -32.61550 -31.22622 -30.02557 -28.87979 -27.85039 -26.27009 -25.01015 -23.18252 -22.12296 -21.84659 -20.41171 -19.05560 -18.47997 -18.07534 -17.47307 -17.05278 -16.87665 -16.64994 -16.30782 -16.07420 -15.82445 -15.50864 -15.18105 -15.05317 -14.32053 -14.17667 -13.93839 -13.61014 -13.49205 -13.15495 -12.97307 -12.82351 -12.66958 -12.50516 -12.37459 -12.15099 -12.02197 -11.80045 -11.77394 -11.34646 -11.27080 -10.85444 -10.76448 -10.62351 -9.69322 -8.92057 -7.79237 -5.24530 1.41471 1.46519 1.49085 1.52408 1.57831 2.47504 2.71967 2.85989 3.31202 3.44008 3.68756 3.71972 3.80276 3.94327 4.04604 4.08800 4.10932 4.16144 4.20471 4.23841 4.30392 4.46620 4.62222 4.63913 4.73478 4.75253 4.83166 4.91692 4.95144 4.98033 5.03054 5.30497 5.43949 5.59905 5.76734 6.04647 6.08520 6.24927 6.30485 6.99785 7.08363 7.74778 8.38039 9.22942 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033000 B = 0.003072 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.285348 B = 9113.753247 C = 9451.048460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.983 3.017 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.155 3.845 11 C -0.129 4.129 12 C 0.093 3.907 13 H 0.103 0.897 14 O -0.380 6.380 15 C 0.039 3.961 16 C 0.515 3.485 17 O -0.572 6.572 18 N -0.616 5.616 19 C 0.065 3.935 20 C 0.042 3.958 21 O -0.393 6.393 22 C 0.053 3.947 23 C 0.074 3.926 24 C 0.113 3.887 25 H 0.249 0.751 26 H 0.075 0.925 27 H 0.004 0.996 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.135 0.865 36 H 0.050 0.950 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -24.074 -4.793 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.811 3.189 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.168 4.168 12 C 0.035 3.965 13 H 0.121 0.879 14 O -0.298 6.298 15 C -0.040 4.040 16 C 0.303 3.697 17 O -0.450 6.450 18 N -0.352 5.352 19 C -0.057 4.057 20 C -0.035 4.035 21 O -0.311 6.311 22 C -0.024 4.024 23 C -0.048 4.048 24 C -0.012 4.012 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.905 -23.960 -4.045 25.006 hybrid contribution 0.271 1.399 0.144 1.432 sum 6.177 -22.561 -3.901 23.714 Atomic orbital electron populations 1.70031 1.06214 1.25217 1.58359 1.25672 0.96720 1.01052 1.02430 0.85007 0.77641 0.78781 0.77447 1.21446 1.19320 1.21665 1.19465 0.91053 0.83695 1.43002 0.90191 1.44695 1.02865 1.00728 1.87041 1.21734 0.84082 0.93941 0.97197 1.22994 0.97734 0.95724 1.00300 1.23112 0.94080 0.85088 0.94228 0.87921 1.88046 1.83476 1.23601 1.34682 1.22539 1.01799 0.85923 0.93782 1.20765 0.76470 0.83351 0.89070 1.90710 1.53410 1.80982 1.19897 1.48203 1.63584 1.13564 1.09821 1.22905 0.98647 1.04528 0.79594 1.23270 0.94387 0.89317 0.96488 1.87956 1.91700 1.34856 1.16612 1.23033 0.93853 1.02444 0.83085 1.22396 0.98297 0.89604 0.94518 1.21861 0.95519 0.85702 0.98161 0.94147 0.90744 0.97835 0.92759 0.88664 0.86741 0.87959 0.88384 0.86636 0.92653 0.84773 0.93150 0.85412 0.89815 0.89264 0.94316 0.96469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.09 21.65 0.22 -56.86 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -33.38 3.39 -691.97 -2.35 -35.73 16 10 C 0.16 7.81 5.89 86.86 0.51 8.33 16 11 C -0.13 -5.14 6.81 31.99 0.22 -4.93 16 12 C 0.09 3.25 3.44 31.79 0.11 3.36 16 13 H 0.10 2.85 7.82 -2.39 -0.02 2.84 16 14 O -0.38 -13.15 9.61 -129.94 -1.25 -14.40 16 15 C 0.04 0.89 4.63 71.24 0.33 1.22 16 16 C 0.51 13.74 7.79 87.66 0.68 14.43 16 17 O -0.57 -21.49 15.97 16.00 0.26 -21.23 16 18 N -0.62 -11.43 3.01 -816.47 -2.46 -13.89 16 19 C 0.06 0.66 6.57 86.49 0.57 1.23 16 20 C 0.04 0.42 7.00 72.22 0.51 0.93 16 21 O -0.39 -5.69 10.74 -148.98 -1.60 -7.29 16 22 C 0.05 0.71 6.99 72.09 0.50 1.22 16 23 C 0.07 1.25 6.64 86.37 0.57 1.82 16 24 C 0.11 4.85 7.03 86.73 0.61 5.46 16 25 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.07 4.30 5.87 -2.39 -0.01 4.28 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 30 H 0.11 1.80 7.98 -2.38 -0.02 1.78 16 31 H 0.10 1.87 7.67 -2.39 -0.02 1.85 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 0.74 6.05 -2.39 -0.01 0.73 16 34 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.76 7.08 -2.39 -0.02 1.74 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 Total: -1.00 -78.90 330.30 1.80 -77.11 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.01 Total: 7.58 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.94 Total: 16.58 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -4.59 Total: -106.48 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -2.59 Total: -42.92 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.90 1.80 -77.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210260920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.419 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds