Wall clock time and date at job start Tue Mar 31 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.21346 * 2 1 4 4 C 1.53465 * 109.32938 * 240.69149 * 2 1 3 5 5 N 1.47271 * 107.93412 * 286.52738 * 4 2 1 6 6 C 1.34783 * 121.35096 * 118.51287 * 5 4 2 7 7 O 1.21590 * 119.99935 * 359.71550 * 6 5 4 8 8 N 1.34779 * 119.99768 * 179.71761 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00506 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00009 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47177 * 89.99959 * 17 15 13 19 19 H 1.48505 * 109.47036 * 210.00243 * 17 15 13 20 20 H 1.48499 * 109.46776 * 329.99732 * 17 15 13 21 21 C 1.47043 * 117.29379 * 298.23866 * 5 4 2 22 22 C 1.50442 * 108.89130 * 42.98937 * 21 5 4 23 23 O 1.21276 * 118.49335 * 167.27005 * 22 21 5 24 24 N 1.33384 * 123.01750 * 347.29353 * 22 21 5 25 25 H 1.09000 * 109.46978 * 300.61720 * 1 2 3 26 26 H 1.08999 * 109.47721 * 60.62092 * 1 2 3 27 27 H 1.08999 * 109.47427 * 180.61878 * 1 2 3 28 28 H 1.09004 * 109.85379 * 166.92848 * 4 2 1 29 29 H 1.09006 * 109.84259 * 46.11739 * 4 2 1 30 30 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 32 32 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 33 33 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 34 34 H 0.96993 * 120.00255 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.56946 * 162.81011 * 21 5 4 36 36 H 1.08996 * 109.56741 * 283.04959 * 21 5 4 37 37 H 0.97006 * 117.70336 * 184.29872 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0380 -0.7089 -1.2628 5 7 1.8119 -2.1543 -1.0934 6 6 1.0078 -2.8409 -1.9292 7 8 0.4475 -2.2664 -2.8426 8 7 0.8247 -4.1645 -1.7523 9 6 -0.0489 -4.9110 -2.6610 10 6 -0.0816 -6.3602 -2.2489 11 8 0.5613 -6.7326 -1.2901 12 7 -0.8259 -7.2421 -2.9450 13 6 -0.8561 -8.5604 -2.5698 14 1 -0.2830 -8.8922 -1.7165 15 6 -1.6230 -9.4697 -3.2877 16 7 -1.6523 -10.7333 -2.9278 17 14 -2.6135 -8.8959 -4.7639 18 1 -1.7834 -9.0060 -5.9902 19 1 -3.8240 -9.7441 -4.9077 20 1 -3.0208 -7.4815 -4.5671 21 6 2.5041 -2.8190 0.0207 22 6 2.4107 -1.9460 1.2424 23 8 2.7138 -2.4201 2.3167 24 7 2.0094 -0.6748 1.1984 25 1 -0.3633 0.5234 0.8844 26 1 -0.3634 0.5041 -0.8955 27 1 -0.3634 -1.0276 0.0111 28 1 3.1029 -0.5159 -1.3927 29 1 1.4897 -0.3505 -2.1341 30 1 1.2720 -4.6228 -1.0238 31 1 0.3327 -4.8316 -3.6789 32 1 -1.0565 -4.4976 -2.6175 33 1 -1.3402 -6.9441 -3.7115 34 1 -2.1874 -11.3681 -3.4293 35 1 2.0319 -3.7805 0.2222 36 1 3.5509 -2.9738 -0.2403 37 1 2.0386 -0.1638 2.0224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312662199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:01 Heat of formation + Delta-G solvation = -111.225730 kcal Electronic energy + Delta-G solvation = -22508.663588 eV Core-core repulsion = 18899.488352 eV Total energy + Delta-G solvation = -3609.175236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02626 -40.77721 -40.03707 -37.93916 -36.30937 -35.74803 -35.15091 -33.83032 -32.16984 -29.73256 -28.95025 -27.39604 -25.88522 -23.74019 -21.88161 -21.49398 -20.68067 -19.99571 -19.64698 -18.33051 -17.79673 -17.50737 -17.16798 -16.77116 -16.64895 -16.41582 -15.85604 -15.68082 -15.33448 -15.05380 -14.86915 -14.57942 -14.33864 -14.09916 -13.69367 -13.62215 -13.43954 -13.00410 -12.95321 -12.48564 -12.44200 -12.32416 -11.99647 -11.73190 -11.57665 -11.19384 -10.66132 -10.37240 -10.30375 -10.24815 -9.68163 -8.45143 -6.07605 1.30333 1.32954 1.34889 1.38935 1.45312 1.78643 1.97654 2.19766 2.21360 2.56445 2.93151 3.11156 3.34115 3.63206 3.92138 4.00392 4.02256 4.24551 4.34522 4.38079 4.44515 4.59168 4.75179 4.83322 4.86860 5.14514 5.22398 5.30424 5.48579 5.64741 5.76959 5.88512 6.17191 6.48942 6.71055 6.78712 7.04648 7.27313 7.38211 7.78598 8.71402 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.003589 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.180074 B = 7799.840362 C = 8406.392678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 H 0.143 0.857 4 C 0.112 3.888 5 N -0.627 5.627 6 C 0.716 3.284 7 O -0.610 6.610 8 N -0.731 5.731 9 C 0.138 3.862 10 C 0.443 3.557 11 O -0.616 6.616 12 N -0.576 5.576 13 C -0.332 4.332 14 H 0.062 0.938 15 C -0.008 4.008 16 N -0.927 5.927 17 Si 0.960 3.040 18 H -0.255 1.255 19 H -0.274 1.274 20 H -0.231 1.231 21 C 0.098 3.902 22 C 0.516 3.484 23 O -0.591 6.591 24 N -0.698 5.698 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.025 0.975 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.406 0.594 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.393 0.607 34 H 0.281 0.719 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 26.258 -0.462 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.160 0.840 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.417 3.583 7 O -0.490 6.490 8 N -0.390 5.390 9 C 0.010 3.990 10 C 0.231 3.769 11 O -0.502 6.502 12 N -0.216 5.216 13 C -0.461 4.461 14 H 0.080 0.920 15 C -0.208 4.208 16 N -0.567 5.567 17 Si 0.780 3.220 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.154 1.154 21 C -0.029 4.029 22 C 0.302 3.698 23 O -0.472 6.472 24 N -0.349 5.349 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.245 0.755 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.148 0.852 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.180 25.822 -0.201 26.337 hybrid contribution -0.503 -0.792 0.161 0.952 sum 4.677 25.030 -0.040 25.463 Atomic orbital electron populations 1.22213 0.95166 1.01167 1.03543 1.21706 0.94502 0.98371 0.83381 0.83951 1.22326 1.03543 0.76517 0.98633 1.47253 1.48873 1.10283 1.30207 1.15637 0.79576 0.81023 0.82022 1.90890 1.54126 1.69171 1.34855 1.44962 1.51692 1.07283 1.35062 1.20736 0.96662 0.86920 0.94702 1.20561 0.82878 0.88441 0.85050 1.90537 1.47949 1.80484 1.31271 1.41895 1.43117 1.07561 1.29040 1.19027 1.29081 0.83396 1.14644 0.92013 1.26088 0.98236 0.94715 1.01781 1.69784 1.41122 1.03778 1.41966 0.85427 0.78415 0.80314 0.77840 1.17958 1.19933 1.15434 1.21853 1.01530 0.96153 0.83325 1.20328 0.76001 0.83282 0.90142 1.90809 1.52207 1.73092 1.31080 1.45444 1.64078 1.11220 1.14159 0.91098 0.90024 0.95575 0.87595 0.86817 0.75480 0.87411 0.87884 0.77130 0.90917 0.87889 0.85247 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.38 71.98 0.68 -1.40 16 2 C 0.13 1.15 3.87 45.31 0.18 1.33 16 3 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 4 C 0.11 1.38 5.92 86.39 0.51 1.89 16 5 N -0.63 -12.46 2.74 -840.36 -2.30 -14.76 16 6 C 0.72 19.51 8.34 179.05 1.49 21.00 16 7 O -0.61 -19.14 15.82 -4.00 -0.06 -19.20 16 8 N -0.73 -22.03 5.43 -482.28 -2.62 -24.65 16 9 C 0.14 4.39 6.15 85.63 0.53 4.91 16 10 C 0.44 19.15 7.85 87.66 0.69 19.83 16 11 O -0.62 -31.84 15.24 -3.07 -0.05 -31.89 16 12 N -0.58 -26.22 5.09 -306.98 -1.56 -27.79 16 13 C -0.33 -18.86 10.16 84.04 0.85 -18.01 16 14 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 15 C -0.01 -0.45 5.50 84.92 0.47 0.02 16 16 N -0.93 -54.53 13.96 21.66 0.30 -54.23 16 17 Si 0.96 37.73 27.74 68.60 1.90 39.63 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 21 C 0.10 1.93 6.43 85.45 0.55 2.48 16 22 C 0.52 11.07 7.84 87.79 0.69 11.75 16 23 O -0.59 -17.98 17.80 -3.02 -0.05 -18.04 16 24 N -0.70 -9.63 5.00 -445.66 -2.23 -11.86 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.02 0.52 7.99 -2.39 -0.02 0.50 16 28 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.11 1.55 7.00 -2.38 -0.02 1.54 16 30 H 0.41 12.77 5.07 -92.71 -0.47 12.30 16 31 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 34 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.10 2.42 5.95 -2.39 -0.01 2.40 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 4.62 8.80 -92.70 -0.82 3.81 16 Total: -1.00 -80.20 314.28 -0.78 -80.98 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.74 Total: 38.00 kcal Atomic # 6 Polarization: 37.18 SS G_CDS: 6.63 Total: 43.81 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -8.41 Total: -133.29 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -0.16 Total: -69.13 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.90 Total: 39.63 kcal Total: -80.20 -0.78 -80.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.246 kcal (2) G-P(sol) polarization free energy of solvation -80.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds