Wall clock time and date at job start Tue Mar 31 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47084 * 269.99851 * 3 2 1 5 5 H 1.48499 * 109.47544 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.47117 * 150.00245 * 3 2 1 7 7 C 1.37876 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47586 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47235 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99864 * 179.97438 * 12 11 10 14 14 O 1.21346 * 120.00146 * 359.97438 * 13 12 11 15 15 C 1.49460 * 120.00134 * 179.97438 * 13 12 11 16 16 O 1.21347 * 119.99485 * 358.88852 * 15 13 12 17 17 N 1.34772 * 120.00434 * 178.88810 * 15 13 12 18 18 C 1.46499 * 119.99719 * 5.86410 * 17 15 13 19 19 C 1.52998 * 109.47655 * 266.03248 * 18 17 15 20 20 O 1.42901 * 109.46610 * 65.00235 * 19 18 17 21 21 C 1.46497 * 120.00255 * 185.86687 * 17 15 13 22 22 C 1.53002 * 117.49859 * 16.29100 * 21 17 15 23 23 C 1.53001 * 117.50005 * 307.63151 * 21 17 15 24 24 H 0.96996 * 120.00530 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47494 * 59.99738 * 9 7 2 26 26 H 1.09006 * 109.47295 * 299.99827 * 9 7 2 27 27 H 1.09004 * 109.47104 * 59.99375 * 10 9 7 28 28 H 1.09006 * 109.46645 * 300.00100 * 10 9 7 29 29 H 1.09000 * 109.47105 * 59.99146 * 11 10 9 30 30 H 1.09004 * 109.46703 * 300.00318 * 11 10 9 31 31 H 0.96998 * 120.00168 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47487 * 26.03963 * 18 17 15 33 33 H 1.09001 * 109.47358 * 146.02912 * 18 17 15 34 34 H 1.09000 * 109.47320 * 184.99887 * 19 18 17 35 35 H 1.08991 * 109.47196 * 305.00342 * 19 18 17 36 36 H 0.96705 * 113.99768 * 180.02562 * 20 19 18 37 37 H 1.08998 * 115.55143 * 161.95517 * 21 17 15 38 38 H 1.09005 * 117.49574 * 359.97438 * 22 21 17 39 39 H 1.08999 * 117.49896 * 145.01410 * 22 21 17 40 40 H 1.08998 * 117.49493 * 214.98139 * 23 21 17 41 41 H 1.08998 * 117.49832 * 359.97259 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4806 -4.9871 -0.0033 12 7 2.4326 -6.1005 -0.0037 13 6 1.9834 -7.3712 -0.0047 14 8 0.7904 -7.5930 -0.0048 15 6 2.9547 -8.5072 -0.0057 16 8 4.1475 -8.2854 -0.0259 17 7 2.5057 -9.7777 0.0160 18 6 1.0699 -10.0491 -0.0893 19 6 0.4706 -10.1757 1.3128 20 8 0.5695 -8.9202 1.9881 21 6 3.4534 -10.8874 0.1447 22 6 4.8670 -10.5568 0.6279 23 6 4.6264 -10.9322 -0.8365 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 2.8715 -3.6046 0.8890 28 1 2.8728 -3.6038 -0.8910 29 1 0.8548 -5.0441 -0.8939 30 1 0.8529 -5.0454 0.8860 31 1 3.3863 -5.9232 -0.0032 32 1 0.5833 -9.2307 -0.6199 33 1 0.9150 -10.9793 -0.6359 34 1 -0.5775 -10.4649 1.2352 35 1 1.0162 -10.9341 1.8740 36 1 0.2084 -8.9266 2.8852 37 1 3.0237 -11.8385 0.4592 38 1 5.0919 -9.5135 0.8495 39 1 5.3673 -11.2905 1.2598 40 1 4.9686 -11.9127 -1.1674 41 1 4.6928 -10.1362 -1.5782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328617254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:39 Heat of formation + Delta-G solvation = -99.565693 kcal Electronic energy + Delta-G solvation = -22667.824864 eV Core-core repulsion = 19162.695589 eV Total energy + Delta-G solvation = -3505.129275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05927 -39.97343 -38.26680 -37.21742 -36.99339 -35.32641 -34.79459 -32.99126 -29.99576 -28.90481 -26.50169 -24.75804 -23.83314 -23.27746 -22.61662 -22.32874 -20.54593 -18.84837 -18.53194 -18.14473 -17.59812 -17.15757 -17.09036 -16.64624 -16.36162 -16.17395 -15.46950 -15.30092 -15.04323 -14.60594 -14.54629 -14.26696 -13.81115 -13.77207 -13.61941 -13.31594 -12.83673 -12.74466 -12.55124 -12.44770 -12.36806 -11.98527 -11.71836 -11.66246 -11.50991 -11.30090 -11.21664 -10.78223 -10.54831 -10.17898 -10.04378 -9.54736 -8.19423 -6.30512 0.42065 1.30369 1.41914 1.42956 1.54167 2.19426 2.38533 2.44962 2.94578 3.14233 3.35493 3.54197 3.85475 4.02572 4.06390 4.12184 4.20133 4.27176 4.34553 4.50056 4.54331 4.62739 4.78645 4.83183 4.86467 4.93269 5.02104 5.06905 5.15091 5.30675 5.40521 5.51828 5.64150 5.70847 5.84308 5.95680 6.22544 6.30435 6.75961 6.86252 6.99364 7.07703 7.38789 8.92588 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.003053 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.504399 B = 9169.214068 C = 9862.266860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.135 3.865 12 N -0.697 5.697 13 C 0.499 3.501 14 O -0.506 6.506 15 C 0.511 3.489 16 O -0.538 6.538 17 N -0.548 5.548 18 C 0.081 3.919 19 C 0.067 3.933 20 O -0.582 6.582 21 C 0.064 3.936 22 C -0.201 4.201 23 C -0.180 4.180 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.413 0.587 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.384 0.616 37 H 0.169 0.831 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -27.347 1.621 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.012 3.988 12 N -0.350 5.350 13 C 0.280 3.720 14 O -0.382 6.382 15 C 0.294 3.706 16 O -0.417 6.417 17 N -0.278 5.278 18 C -0.040 4.040 19 C -0.011 4.011 20 O -0.389 6.389 21 C -0.039 4.039 22 C -0.238 4.238 23 C -0.219 4.219 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.249 0.751 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.186 0.814 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.563 -27.119 1.045 27.520 hybrid contribution 0.169 1.096 0.559 1.242 sum 4.733 -26.023 1.604 26.499 Atomic orbital electron populations 1.70096 1.07809 1.27815 1.51619 1.25984 0.95766 1.03403 0.94741 0.85435 0.78667 0.78400 0.78466 1.19809 1.20834 1.18679 1.21679 0.93677 0.92182 1.50591 0.91883 1.18914 0.94277 0.92536 0.95346 1.21634 0.98627 0.92180 1.01907 1.21337 0.91464 0.84481 1.01521 1.45841 1.11730 1.04752 1.72707 1.20202 0.88896 0.84432 0.78458 1.90621 1.16606 1.83566 1.47361 1.20177 0.87879 0.84781 0.77723 1.90602 1.16543 1.84857 1.49721 1.47200 1.08786 1.03576 1.68231 1.22621 0.77550 1.05704 0.98148 1.22539 1.00144 0.85573 0.92871 1.86701 1.85545 1.33978 1.32671 1.22214 0.84923 0.91011 1.05788 1.23745 0.97454 1.04739 0.97869 1.23280 1.02029 1.03480 0.93073 0.92748 0.98561 0.98598 0.91802 0.91699 0.92089 0.92208 0.75069 0.87438 0.86034 0.91159 0.92546 0.76858 0.81414 0.87776 0.86753 0.85637 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.11 -4.26 5.27 30.59 0.16 -4.10 16 11 C 0.14 4.90 5.67 86.38 0.49 5.39 16 12 N -0.70 -22.27 5.55 -464.42 -2.58 -24.85 16 13 C 0.50 15.78 7.22 87.27 0.63 16.41 16 14 O -0.51 -17.06 10.93 18.89 0.21 -16.85 16 15 C 0.51 14.43 7.35 87.27 0.64 15.07 16 16 O -0.54 -16.62 12.23 -3.24 -0.04 -16.66 16 17 N -0.55 -11.62 2.80 -799.41 -2.24 -13.86 16 18 C 0.08 1.41 5.64 86.38 0.49 1.90 16 19 C 0.07 1.04 7.36 71.98 0.53 1.57 16 20 O -0.58 -13.16 10.57 -126.86 -1.34 -14.51 16 21 C 0.06 1.01 6.62 44.99 0.30 1.31 16 22 C -0.20 -3.73 9.63 30.62 0.29 -3.44 16 23 C -0.18 -3.02 9.88 30.62 0.30 -2.72 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.41 12.23 7.95 -92.71 -0.74 11.49 16 32 H 0.11 2.55 5.05 -10.57 -0.05 2.50 16 33 H 0.12 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.38 5.74 9.12 -74.05 -0.68 5.06 16 37 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 2.72 5.21 -5.87 -0.03 2.69 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.61 7.61 -2.39 -0.02 1.60 16 Total: -1.00 -72.28 339.04 0.58 -71.70 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.42 Total: 22.72 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.68 Total: 2.70 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -4.53 Total: -95.53 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.17 Total: -48.01 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.28 0.58 -71.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328617254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.867 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds