Wall clock time and date at job start Tue Mar 31 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53091 * 109.47888 * 239.97167 * 2 1 3 5 5 C 1.53185 * 109.16041 * 182.42117 * 4 2 1 6 6 H 1.09007 * 109.53353 * 297.09906 * 5 4 2 7 7 C 1.50692 * 109.54451 * 176.83708 * 5 4 2 8 8 O 1.21286 * 119.99879 * 0.43783 * 7 5 4 9 9 N 1.34776 * 120.00206 * 180.43052 * 7 5 4 10 10 C 1.46504 * 119.99822 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.46745 * 180.02562 * 10 9 7 12 12 O 1.21296 * 120.00374 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00119 * 180.02562 * 11 10 9 14 14 C 1.37100 * 120.00448 * 180.02562 * 13 11 10 15 15 H 1.08008 * 119.99438 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00269 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99949 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99952 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47179 * 90.00005 * 18 16 14 20 20 H 1.48500 * 109.46693 * 209.99687 * 18 16 14 21 21 H 1.48494 * 109.46979 * 329.99660 * 18 16 14 22 22 C 1.53178 * 109.04173 * 56.96585 * 5 4 2 23 23 C 1.53096 * 109.16518 * 303.02263 * 22 5 4 24 24 O 1.42903 * 109.47659 * 120.02008 * 2 1 3 25 25 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 28 28 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 29 29 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 31 31 H 1.08994 * 109.52416 * 302.31443 * 4 2 1 32 32 H 1.08997 * 109.52121 * 62.50683 * 4 2 1 33 33 H 0.96992 * 119.99717 * 0.02562 * 9 7 5 34 34 H 1.08991 * 109.47279 * 299.99802 * 10 9 7 35 35 H 1.08998 * 109.47062 * 60.00545 * 10 9 7 36 36 H 0.97001 * 120.00319 * 359.97438 * 13 11 10 37 37 H 0.97002 * 119.99670 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.51918 * 183.12015 * 22 5 4 39 39 H 1.08996 * 109.57642 * 62.96740 * 22 5 4 40 40 H 1.09007 * 109.47792 * 297.62976 * 23 22 5 41 41 H 1.08996 * 109.47841 * 177.59629 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5712 -0.7711 -1.2120 6 1 3.9690 0.2433 -1.2408 7 6 4.0800 -1.5480 -2.3987 8 8 3.2974 -2.0105 -3.2015 9 7 5.4048 -1.7288 -2.5681 10 6 5.8995 -2.4836 -3.7221 11 6 7.4048 -2.5403 -3.6774 12 8 8.0053 -2.0027 -2.7710 13 7 8.0838 -3.1875 -4.6451 14 6 9.4532 -3.2396 -4.6042 15 1 9.9878 -2.7615 -3.7966 16 6 10.1532 -3.9073 -5.6016 17 7 11.4658 -3.9568 -5.5626 18 14 9.2284 -4.7347 -6.9979 19 1 9.0500 -3.7707 -8.1133 20 1 10.0020 -5.9083 -7.4770 21 1 7.8982 -5.1829 -6.5135 22 6 4.0176 -1.4602 0.0812 23 6 3.4307 -0.7092 1.2793 24 8 2.0065 -0.6740 1.1665 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6770 1.9564 0.8899 29 1 3.1303 1.4422 -0.0005 30 1 1.6770 1.9563 -0.8901 31 1 1.6443 -1.7374 -1.2710 32 1 1.7149 -0.1843 -2.1398 33 1 6.0307 -1.3591 -1.9259 34 1 5.4972 -3.4961 -3.6936 35 1 5.5813 -1.9919 -4.6414 36 1 7.6036 -3.6172 -5.3702 37 1 11.9545 -4.4226 -6.2591 38 1 5.1058 -1.4499 0.1424 39 1 3.6622 -2.4906 0.0874 40 1 3.8193 0.3091 1.2958 41 1 3.7099 -1.2200 2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337227483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:17 Heat of formation + Delta-G solvation = -131.684314 kcal Electronic energy + Delta-G solvation = -22684.631215 eV Core-core repulsion = 19178.109172 eV Total energy + Delta-G solvation = -3506.522043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71561 -39.22901 -38.23978 -34.61350 -33.96589 -33.90641 -33.52775 -31.83499 -28.69382 -28.00759 -27.59905 -25.08727 -23.88323 -22.70257 -20.23122 -19.68411 -19.37751 -18.66003 -17.33005 -16.44124 -16.20040 -15.77440 -15.46266 -15.30756 -14.90260 -14.82507 -14.53960 -14.18911 -13.69488 -13.46077 -13.23294 -13.04394 -12.70332 -12.53074 -12.38294 -12.21847 -12.14877 -12.05099 -11.95514 -11.52561 -11.30713 -11.26615 -10.94731 -10.67434 -10.39651 -10.09927 -9.97513 -9.73557 -9.48252 -8.93222 -8.81637 -8.34244 -6.44252 -3.97015 2.69092 2.96778 3.01472 3.09487 3.21562 3.51932 3.53552 4.00407 4.36819 4.46358 4.54503 4.57250 4.60354 4.75628 4.93442 5.10429 5.10828 5.16221 5.21375 5.32032 5.40711 5.45618 5.50657 5.57925 5.63683 5.69374 5.73508 5.76643 5.79261 5.83885 5.92711 5.99458 6.13687 6.52168 7.05714 7.40273 7.68332 7.96441 8.31008 8.42278 8.77906 9.26025 9.59200 10.67846 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.003080 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.433511 B = 9088.794987 C = 9499.948986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.110 3.890 3 C -0.182 4.182 4 C -0.120 4.120 5 C -0.108 4.108 6 H 0.100 0.900 7 C 0.517 3.483 8 O -0.548 6.548 9 N -0.707 5.707 10 C 0.105 3.895 11 C 0.437 3.563 12 O -0.580 6.580 13 N -0.576 5.576 14 C -0.311 4.311 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.267 1.267 22 C -0.150 4.150 23 C 0.061 3.939 24 O -0.374 6.374 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.276 0.724 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 7.360 9.222 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.071 3.929 3 C -0.239 4.239 4 C -0.158 4.158 5 C -0.129 4.129 6 H 0.118 0.882 7 C 0.303 3.697 8 O -0.426 6.426 9 N -0.361 5.361 10 C -0.023 4.023 11 C 0.223 3.777 12 O -0.464 6.464 13 N -0.213 5.213 14 C -0.439 4.439 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.512 5.512 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.192 1.192 22 C -0.188 4.188 23 C -0.016 4.016 24 O -0.293 6.293 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.208 0.792 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.208 7.221 9.269 22.516 hybrid contribution 0.171 -0.506 -1.219 1.331 sum -19.037 6.715 8.049 21.732 Atomic orbital electron populations 1.21739 0.92233 1.02994 1.02418 1.21528 0.94952 0.91115 0.85324 1.22484 1.02080 0.96445 1.02884 1.22004 0.93021 1.02749 0.98011 1.21394 0.97636 1.00405 0.93512 0.88212 1.20493 0.81999 0.80414 0.86812 1.90680 1.55815 1.50459 1.45634 1.45726 1.07205 1.55458 1.27695 1.20980 0.93749 0.97603 0.89922 1.19634 0.88004 0.84959 0.85077 1.90536 1.69475 1.49973 1.36417 1.42130 1.07835 1.48317 1.23023 1.19443 0.79056 1.33768 1.11667 0.86071 1.25070 0.95529 0.97327 0.97954 1.69620 1.05654 1.41678 1.34281 0.86667 0.79867 0.80235 0.82711 1.19372 1.19938 1.19240 1.22226 1.01975 1.00965 0.93601 1.22574 0.81218 0.99741 0.98023 1.87969 1.20871 1.77419 1.43072 0.91028 0.91700 0.91835 0.91745 0.91786 0.91321 0.90128 0.90213 0.75029 0.89764 0.89753 0.79238 0.91345 0.89814 0.90320 0.92563 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 2 C 0.11 1.02 1.11 -90.57 -0.10 0.92 16 3 C -0.18 -1.41 7.93 37.16 0.29 -1.11 16 4 C -0.12 -1.28 3.52 -26.59 -0.09 -1.37 16 5 C -0.11 -1.19 2.31 -91.59 -0.21 -1.40 16 6 H 0.10 0.96 6.62 -51.93 -0.34 0.61 16 7 C 0.52 7.59 7.16 -10.99 -0.08 7.51 16 8 O -0.55 -9.67 15.97 5.55 0.09 -9.59 16 9 N -0.71 -10.94 5.43 -61.48 -0.33 -11.27 16 10 C 0.11 1.80 6.15 -5.19 -0.03 1.77 16 11 C 0.44 9.49 7.85 -10.99 -0.09 9.40 16 12 O -0.58 -14.39 15.24 5.54 0.08 -14.31 16 13 N -0.58 -13.27 5.09 -10.96 -0.06 -13.33 16 14 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 15 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 16 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 17 N -0.87 -24.79 13.96 55.50 0.77 -24.01 16 18 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 22 C -0.15 -1.49 5.29 -26.59 -0.14 -1.63 16 23 C 0.06 0.54 6.52 37.21 0.24 0.78 16 24 O -0.37 -3.96 10.24 -35.23 -0.36 -4.32 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 4.98 -51.93 -0.26 0.23 16 30 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.08 0.98 8.03 -51.93 -0.42 0.57 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 6.24 6.92 -40.82 -0.28 5.96 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 37 H 0.28 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -32.17 330.18 -5.71 -37.89 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.05 Total: 13.24 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.12 Total: 6.56 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.38 Total: -48.61 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.19 Total: -28.22 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.17 -5.71 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337227483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.798 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds