Wall clock time and date at job start Tue Mar 31 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99398 * 2 1 4 4 H 1.48499 * 109.47185 * 239.99926 * 3 2 1 5 5 H 1.48501 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46958 * 120.00452 * 3 2 1 7 7 C 1.38806 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49270 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11441 * 155.36143 * 10 9 7 12 12 O 1.42902 * 113.74218 * 269.15086 * 11 10 9 13 13 C 1.53006 * 113.73862 * 137.95352 * 11 10 9 14 14 N 1.46498 * 109.46687 * 184.99722 * 13 11 10 15 15 C 1.34782 * 119.99965 * 180.02562 * 14 13 11 16 16 O 1.21287 * 119.99775 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00376 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.48982 * 321.24660 * 17 15 14 19 19 C 1.54106 * 110.55078 * 84.10110 * 17 15 14 20 20 N 1.47050 * 103.86362 * 118.59660 * 19 17 15 21 21 C 1.33947 * 109.17740 * 0.02562 * 20 19 17 22 22 O 1.21593 * 123.04273 * 179.97438 * 21 20 19 23 23 N 1.33944 * 113.91804 * 0.02562 * 21 20 19 24 24 C 1.47577 * 134.49446 * 0.02562 * 9 7 2 25 25 H 0.96998 * 120.00656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 113.77328 * 41.06092 * 10 9 7 27 27 H 1.09003 * 113.87223 * 269.67319 * 10 9 7 28 28 H 0.96699 * 113.99880 * 178.07455 * 12 11 10 29 29 H 1.08992 * 109.47046 * 304.99640 * 13 11 10 30 30 H 1.08997 * 109.47395 * 65.00181 * 13 11 10 31 31 H 0.97004 * 120.00552 * 359.97438 * 14 13 11 32 32 H 1.08998 * 110.54806 * 237.19388 * 19 17 15 33 33 H 1.09000 * 110.54932 * 359.97438 * 19 17 15 34 34 H 0.96994 * 125.41061 * 179.97438 * 20 19 17 35 35 H 0.97006 * 125.41021 * 180.02562 * 23 21 20 36 36 H 1.09003 * 113.76916 * 90.33323 * 24 9 7 37 37 H 1.09004 * 113.76688 * 318.94485 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7466 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.7204 -3.8101 -0.0005 11 6 0.3473 -4.0829 0.6398 12 8 0.3635 -4.0580 2.0685 13 6 -0.3632 -5.3137 0.0727 14 7 -1.7022 -5.4173 0.6578 15 6 -2.5157 -6.4319 0.3037 16 8 -2.1393 -7.2589 -0.4996 17 6 -3.8934 -6.5382 0.9050 18 1 -3.8722 -6.2604 1.9588 19 6 -4.8915 -5.6562 0.1299 20 7 -5.8792 -6.6142 -0.3889 21 6 -5.5408 -7.8500 0.0017 22 8 -6.1879 -8.8376 -0.2887 23 7 -4.4256 -7.8993 0.7419 24 6 -0.1031 -2.7575 -0.0005 25 1 -0.4851 0.8400 0.0004 26 1 2.5627 -4.0323 0.6547 27 1 1.8329 -4.2366 -0.9973 28 1 -0.5027 -4.1998 2.4742 29 1 -0.4460 -5.2187 -1.0099 30 1 0.2098 -6.2084 0.3162 31 1 -2.0032 -4.7561 1.3006 32 1 -5.3682 -4.9395 0.7986 33 1 -4.3905 -5.1410 -0.6897 34 1 -6.6532 -6.3872 -0.9275 35 1 -4.0308 -8.7050 1.1107 36 1 -0.5270 -2.8731 -0.9981 37 1 -0.7167 -2.1391 0.6547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484292204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:25 Heat of formation + Delta-G solvation = -31.268471 kcal Electronic energy + Delta-G solvation = -22500.131551 eV Core-core repulsion = 18894.423522 eV Total energy + Delta-G solvation = -3605.708029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55685 -39.72339 -38.62806 -36.42107 -35.04932 -34.19354 -33.28801 -32.07261 -30.07048 -28.31236 -26.12394 -25.09981 -24.01841 -22.06272 -21.96843 -20.82220 -19.45655 -18.49709 -17.97164 -16.88778 -16.66028 -16.29235 -16.00761 -15.67827 -15.15320 -14.93014 -14.52825 -14.30877 -14.02790 -13.96975 -13.58134 -13.45916 -13.20410 -12.79136 -12.55882 -12.34467 -11.84880 -11.14034 -10.99253 -10.81178 -10.62709 -10.54804 -10.40559 -9.94744 -9.68002 -9.60240 -9.38245 -9.14162 -9.10612 -8.88818 -6.97729 -5.84579 -3.16147 2.19003 2.49092 2.75112 3.06149 3.36120 3.40157 3.40885 3.70752 3.92017 4.28966 4.37181 4.42330 4.46869 4.87919 4.93118 5.09625 5.11853 5.17989 5.29997 5.50000 5.62264 5.89976 6.15379 6.27508 6.41406 6.46910 6.69753 6.85181 6.90779 7.06374 7.06897 7.23921 7.41773 7.88722 7.92564 8.03887 8.35992 8.96780 9.63094 10.48161 11.32794 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.003405 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.028675 B = 8221.848966 C = 8743.765056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.135 3.865 11 C 0.063 3.937 12 O -0.525 6.525 13 C 0.102 3.898 14 N -0.717 5.717 15 C 0.501 3.499 16 O -0.523 6.523 17 C 0.103 3.897 18 H 0.118 0.882 19 C 0.103 3.897 20 N -0.738 5.738 21 C 0.706 3.294 22 O -0.586 6.586 23 N -0.715 5.715 24 C 0.144 3.856 25 H 0.254 0.746 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.361 0.639 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.401 0.599 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.433 0.567 35 H 0.434 0.566 36 H 0.034 0.966 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -9.813 4.093 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.009 3.991 11 C 0.020 3.980 12 O -0.328 6.328 13 C -0.022 4.022 14 N -0.370 5.370 15 C 0.283 3.717 16 O -0.398 6.398 17 C -0.008 4.008 18 H 0.136 0.864 19 C -0.023 4.023 20 N -0.402 5.402 21 C 0.405 3.595 22 O -0.464 6.464 23 N -0.377 5.377 24 C 0.018 3.982 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.207 0.793 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.275 0.725 35 H 0.276 0.724 36 H 0.052 0.948 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.795 -10.429 3.255 14.025 hybrid contribution -0.233 1.112 0.197 1.153 sum -9.028 -9.317 3.452 13.425 Atomic orbital electron populations 1.69769 1.05031 1.25483 1.56825 1.24750 0.95720 0.97523 1.02321 0.86170 0.78490 0.82934 0.77985 1.21162 1.21531 1.21031 1.18955 0.90303 0.81717 1.43797 0.90150 1.45638 1.01941 0.99149 1.85993 1.22558 0.93369 0.86670 0.96538 1.23778 0.99277 0.93252 0.81648 1.86648 1.33466 1.95153 1.17565 1.22112 0.81463 0.99533 0.99126 1.45935 1.16309 1.28379 1.46411 1.20706 0.86528 0.81832 0.82597 1.90769 1.75344 1.40496 1.33146 1.21871 0.92184 0.84856 1.01840 0.86435 1.22285 0.89003 0.92061 0.98915 1.45047 1.30301 1.06393 1.58420 1.15852 0.81253 0.83902 0.78474 1.91004 1.56850 1.36137 1.62416 1.44814 1.27088 1.08438 1.57338 1.22902 0.89033 0.89069 0.97156 0.93621 0.92622 0.93222 0.79312 0.90103 0.90946 0.76423 0.88285 0.89123 0.72507 0.72373 0.94847 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.09 11.38 55.49 0.63 -25.45 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.04 10.70 -15.06 -0.16 -6.20 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -14.75 3.70 -177.81 -0.66 -15.41 16 10 C 0.14 2.62 8.34 -2.97 -0.02 2.60 16 11 C 0.06 1.04 1.52 -89.69 -0.14 0.90 16 12 O -0.52 -8.51 13.51 -35.23 -0.48 -8.99 16 13 C 0.10 1.34 5.28 -4.04 -0.02 1.32 16 14 N -0.72 -7.02 5.34 -60.30 -0.32 -7.35 16 15 C 0.50 5.31 6.93 -10.99 -0.08 5.24 16 16 O -0.52 -7.99 16.60 5.55 0.09 -7.90 16 17 C 0.10 0.75 4.17 -68.21 -0.28 0.47 16 18 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 19 C 0.10 0.65 7.70 -3.16 -0.02 0.63 16 20 N -0.74 -6.36 6.37 -64.70 -0.41 -6.78 16 21 C 0.71 8.63 8.92 -88.40 -0.79 7.84 16 22 O -0.59 -9.68 18.05 5.28 0.10 -9.59 16 23 N -0.71 -6.97 5.63 -59.33 -0.33 -7.31 16 24 C 0.14 3.02 6.92 -2.98 -0.02 3.00 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.36 4.00 7.61 45.56 0.35 4.34 16 29 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.40 2.88 7.31 -40.82 -0.30 2.58 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.61 7.72 -51.93 -0.40 0.21 16 34 H 0.43 2.97 8.96 -40.82 -0.37 2.60 16 35 H 0.43 3.89 8.96 -40.82 -0.37 3.53 16 36 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 37 H 0.08 1.82 7.15 -51.93 -0.37 1.44 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -37.96 318.02 -7.19 -45.15 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.95 Total: 6.74 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -1.63 Total: 15.50 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.09 Total: -62.29 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.29 Total: -26.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.96 -7.19 -45.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484292204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.886 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds