Wall clock time and date at job start Tue Mar 31 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28714 * 125.32391 * 2 1 4 4 N 1.28982 * 108.98953 * 179.97438 * 3 2 1 5 5 C 1.34183 * 107.25186 * 359.97438 * 4 3 2 6 6 C 1.48008 * 126.69647 * 180.02562 * 5 4 3 7 7 O 1.21542 * 119.99884 * 173.85994 * 6 5 4 8 8 N 1.34775 * 119.99924 * 353.85941 * 6 5 4 9 9 C 1.46493 * 120.00098 * 4.45218 * 8 6 5 10 10 C 1.53001 * 109.47229 * 83.73455 * 9 8 6 11 11 O 1.42893 * 109.46990 * 65.00167 * 10 9 8 12 12 C 1.46505 * 119.99652 * 184.45185 * 8 6 5 13 13 C 1.52992 * 109.47295 * 90.00219 * 12 8 6 14 14 N 1.46496 * 109.47370 * 179.97438 * 13 12 8 15 15 C 1.36943 * 120.00368 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99566 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31610 * 120.00484 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99476 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47235 * 60.00149 * 19 17 15 21 21 H 1.48496 * 109.46725 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47067 * 299.99978 * 19 17 15 23 23 N 1.28870 * 125.31692 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47279 * 270.00393 * 1 2 3 25 25 H 1.09000 * 109.46694 * 30.00623 * 1 2 3 26 26 H 1.09000 * 109.47226 * 150.00428 * 1 2 3 27 27 H 1.09002 * 109.46927 * 203.73190 * 9 8 6 28 28 H 1.09006 * 109.47215 * 323.73050 * 9 8 6 29 29 H 1.09001 * 109.47079 * 184.99905 * 10 9 8 30 30 H 1.08994 * 109.46858 * 304.99567 * 10 9 8 31 31 H 0.96704 * 114.00192 * 180.02562 * 11 10 9 32 32 H 1.09009 * 109.46748 * 210.00286 * 12 8 6 33 33 H 1.09000 * 109.47433 * 329.99781 * 12 8 6 34 34 H 1.08999 * 109.47403 * 299.99843 * 13 12 8 35 35 H 1.09000 * 109.47237 * 59.99442 * 13 12 8 36 36 H 0.96998 * 119.99982 * 359.97438 * 14 13 12 37 37 H 0.97002 * 120.00567 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6874 0.0005 5 6 3.4684 -0.6542 0.0015 6 6 4.6692 -1.5196 0.0029 7 8 4.5502 -2.7238 0.1162 8 7 5.8945 -0.9722 -0.1215 9 6 6.0455 0.4845 -0.1600 10 6 6.0765 1.0319 1.2684 11 8 7.2423 0.5486 1.9385 12 6 7.0753 -1.8339 -0.2182 13 6 7.3514 -2.1578 -1.6878 14 7 8.5325 -3.0190 -1.7845 15 6 8.9732 -3.4417 -3.0103 16 1 8.4501 -3.1399 -3.9056 17 6 10.0927 -4.2573 -3.1019 18 7 10.7303 -4.6247 -2.0108 19 14 10.6942 -4.8334 -4.7740 20 1 11.0396 -3.6548 -5.6088 21 1 11.8967 -5.6871 -4.6002 22 1 9.6239 -5.6167 -5.4421 23 7 2.2100 -1.0515 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 6.9758 0.7400 -0.6672 28 1 5.2055 0.9227 -0.6990 29 1 6.0994 2.1213 1.2396 30 1 5.1863 0.7013 1.8035 31 1 7.3272 0.8561 2.8514 32 1 7.9365 -1.3194 0.2085 33 1 6.8962 -2.7587 0.3302 34 1 6.4903 -2.6722 -2.1144 35 1 7.5305 -1.2330 -2.2362 36 1 9.0025 -3.2898 -0.9804 37 1 11.5124 -5.1950 -2.0747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484491419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:04 Heat of formation + Delta-G solvation = 83.639727 kcal Electronic energy + Delta-G solvation = -22479.628261 eV Core-core repulsion = 18911.195777 eV Total energy + Delta-G solvation = -3568.432484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.69172 -39.85061 -37.16704 -35.66278 -35.54995 -34.21122 -33.42962 -31.49441 -29.62211 -29.12367 -27.58117 -25.31471 -23.70872 -23.16277 -22.96874 -21.51526 -19.90015 -18.08214 -17.89247 -17.51902 -17.14623 -16.84156 -16.10633 -15.46534 -14.72204 -14.52317 -14.37747 -14.00527 -13.91773 -13.68506 -13.52655 -13.18509 -13.13213 -12.81911 -12.63320 -12.17159 -11.64144 -11.40857 -11.18548 -11.06741 -10.85996 -10.82923 -10.62425 -10.54812 -10.26416 -10.06684 -9.98231 -9.66050 -8.79340 -8.54283 -6.85300 -5.68252 -2.97356 0.73714 1.23159 1.45524 2.68530 3.05442 3.50644 3.54145 3.55777 3.70463 3.79042 4.27268 4.36890 4.47864 4.67981 4.68271 4.87608 5.14546 5.16067 5.24059 5.36160 5.58013 5.62517 5.65128 5.79129 5.87909 6.02294 6.13260 6.25277 6.57056 6.79452 6.96393 7.35331 7.62379 7.76937 7.82416 8.08642 8.50159 9.60997 10.17638 10.53148 11.54634 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003728 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.570131 B = 7509.864671 C = 8257.780843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.135 5.135 3 N -0.061 5.061 4 N -0.257 5.257 5 C 0.141 3.859 6 C 0.606 3.394 7 O -0.501 6.501 8 N -0.574 5.574 9 C 0.098 3.902 10 C 0.069 3.931 11 O -0.567 6.567 12 C 0.113 3.887 13 C 0.141 3.859 14 N -0.729 5.729 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 N -0.248 5.248 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.375 0.625 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.020 0.980 36 H 0.385 0.615 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 15.894 8.375 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.048 5.048 3 N -0.054 5.054 4 N -0.132 5.132 5 C -0.143 4.143 6 C 0.387 3.613 7 O -0.371 6.371 8 N -0.306 5.306 9 C -0.025 4.025 10 C -0.010 4.010 11 O -0.372 6.372 12 C -0.008 4.008 13 C 0.012 3.988 14 N -0.374 5.374 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 N -0.101 5.101 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.222 0.778 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.151 15.417 7.677 27.276 hybrid contribution 0.418 -0.403 -0.111 0.591 sum -20.733 15.014 7.566 26.693 Atomic orbital electron populations 1.22551 0.68513 1.07285 1.06389 1.50235 1.11121 1.00707 1.42772 1.78910 0.96743 1.14307 1.15481 1.76216 1.09450 1.10275 1.17282 1.25478 0.93265 0.90121 1.05482 1.16239 0.80703 0.85648 0.78757 1.90889 1.84891 1.13002 1.48366 1.47550 1.05357 1.07584 1.70128 1.22126 1.05053 0.79220 0.96107 1.22538 0.87438 0.97395 0.93607 1.86572 1.44656 1.75901 1.30024 1.21862 0.85294 0.94811 0.98865 1.20938 0.91081 0.94060 0.92677 1.42178 1.30062 1.58317 1.06807 1.19166 1.07975 1.24201 0.85570 0.91257 1.24739 0.98438 1.00696 0.97078 1.69651 1.21812 1.40459 1.26257 0.86242 0.77961 0.78291 0.83539 1.21284 1.21675 1.21282 1.75140 1.02477 1.14151 1.18355 0.87663 0.86582 0.86702 0.88710 0.86744 0.92461 0.94074 0.77841 0.88882 0.89471 0.96078 0.96219 0.78136 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 11.62 59.85 0.70 0.97 16 2 N -0.14 -1.28 4.39 -16.65 -0.07 -1.36 16 3 N -0.06 -0.66 13.23 60.35 0.80 0.14 16 4 N -0.26 -3.22 8.04 32.10 0.26 -2.96 16 5 C 0.14 2.06 7.62 -156.25 -1.19 0.87 16 6 C 0.61 10.49 7.64 -12.26 -0.09 10.40 16 7 O -0.50 -10.44 16.65 5.33 0.09 -10.35 16 8 N -0.57 -9.26 2.43 -174.74 -0.43 -9.68 16 9 C 0.10 1.26 5.37 -4.05 -0.02 1.24 16 10 C 0.07 0.76 6.82 37.16 0.25 1.02 16 11 O -0.57 -6.81 13.26 -35.23 -0.47 -7.28 16 12 C 0.11 2.12 5.52 -4.04 -0.02 2.10 16 13 C 0.14 3.13 6.58 -4.05 -0.03 3.11 16 14 N -0.73 -19.71 5.60 -59.92 -0.34 -20.04 16 15 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 19 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 N -0.25 -3.31 12.17 32.11 0.39 -2.91 16 24 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 1.21 8.02 -51.93 -0.42 0.79 16 28 H 0.12 1.38 5.29 -51.93 -0.27 1.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.47 7.30 -51.93 -0.38 0.09 16 31 H 0.38 2.80 9.12 45.56 0.42 3.22 16 32 H 0.09 1.70 7.73 -51.92 -0.40 1.30 16 33 H 0.09 1.77 7.36 -51.93 -0.38 1.39 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.79 7.67 -40.82 -0.31 10.48 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -38.13 323.87 -3.67 -41.80 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.83 Total: 6.05 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -0.65 Total: 12.03 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 1.34 Total: -65.27 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.38 Total: -17.63 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.13 -3.67 -41.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484491419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.444 kcal (2) G-P(sol) polarization free energy of solvation -38.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds