Wall clock time and date at job start Tue Mar 31 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28714 * 125.32391 * 2 1 4 4 N 1.28982 * 108.98953 * 179.97438 * 3 2 1 5 5 C 1.34183 * 107.25186 * 359.97438 * 4 3 2 6 6 C 1.48008 * 126.69647 * 180.02562 * 5 4 3 7 7 O 1.21542 * 119.99884 * 173.85994 * 6 5 4 8 8 N 1.34775 * 119.99924 * 353.85941 * 6 5 4 9 9 C 1.46493 * 120.00098 * 4.45218 * 8 6 5 10 10 C 1.53001 * 109.47229 * 83.73455 * 9 8 6 11 11 O 1.42893 * 109.46990 * 65.00167 * 10 9 8 12 12 C 1.46505 * 119.99652 * 184.45185 * 8 6 5 13 13 C 1.52992 * 109.47295 * 90.00219 * 12 8 6 14 14 N 1.46496 * 109.47370 * 179.97438 * 13 12 8 15 15 C 1.36943 * 120.00368 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99566 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31610 * 120.00484 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99476 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47235 * 60.00149 * 19 17 15 21 21 H 1.48496 * 109.46725 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47067 * 299.99978 * 19 17 15 23 23 N 1.28870 * 125.31692 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47279 * 270.00393 * 1 2 3 25 25 H 1.09000 * 109.46694 * 30.00623 * 1 2 3 26 26 H 1.09000 * 109.47226 * 150.00428 * 1 2 3 27 27 H 1.09002 * 109.46927 * 203.73190 * 9 8 6 28 28 H 1.09006 * 109.47215 * 323.73050 * 9 8 6 29 29 H 1.09001 * 109.47079 * 184.99905 * 10 9 8 30 30 H 1.08994 * 109.46858 * 304.99567 * 10 9 8 31 31 H 0.96704 * 114.00192 * 180.02562 * 11 10 9 32 32 H 1.09009 * 109.46748 * 210.00286 * 12 8 6 33 33 H 1.09000 * 109.47433 * 329.99781 * 12 8 6 34 34 H 1.08999 * 109.47403 * 299.99843 * 13 12 8 35 35 H 1.09000 * 109.47237 * 59.99442 * 13 12 8 36 36 H 0.96998 * 119.99982 * 359.97438 * 14 13 12 37 37 H 0.97002 * 120.00567 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6874 0.0005 5 6 3.4684 -0.6542 0.0015 6 6 4.6692 -1.5196 0.0029 7 8 4.5502 -2.7238 0.1162 8 7 5.8945 -0.9722 -0.1215 9 6 6.0455 0.4845 -0.1600 10 6 6.0765 1.0319 1.2684 11 8 7.2423 0.5486 1.9385 12 6 7.0753 -1.8339 -0.2182 13 6 7.3514 -2.1578 -1.6878 14 7 8.5325 -3.0190 -1.7845 15 6 8.9732 -3.4417 -3.0103 16 1 8.4501 -3.1399 -3.9056 17 6 10.0927 -4.2573 -3.1019 18 7 10.7303 -4.6247 -2.0108 19 14 10.6942 -4.8334 -4.7740 20 1 11.0396 -3.6548 -5.6088 21 1 11.8967 -5.6871 -4.6002 22 1 9.6239 -5.6167 -5.4421 23 7 2.2100 -1.0515 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 6.9758 0.7400 -0.6672 28 1 5.2055 0.9227 -0.6990 29 1 6.0994 2.1213 1.2396 30 1 5.1863 0.7013 1.8035 31 1 7.3272 0.8561 2.8514 32 1 7.9365 -1.3194 0.2085 33 1 6.8962 -2.7587 0.3302 34 1 6.4903 -2.6722 -2.1144 35 1 7.5305 -1.2330 -2.2362 36 1 9.0025 -3.2898 -0.9804 37 1 11.5124 -5.1950 -2.0747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484491419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:03 Heat of formation + Delta-G solvation = 51.164520 kcal Electronic energy + Delta-G solvation = -22481.036492 eV Core-core repulsion = 18911.195777 eV Total energy + Delta-G solvation = -3569.840715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.59842 -41.18150 -38.26826 -37.14716 -36.46316 -35.83830 -34.39838 -33.44973 -30.97499 -29.91404 -28.99728 -26.68393 -25.31228 -24.18076 -24.02368 -23.21563 -21.14049 -19.34427 -18.98241 -18.73382 -18.39250 -17.85922 -17.50805 -16.85321 -16.39951 -15.77875 -15.55411 -15.38069 -15.23305 -14.96938 -14.66515 -14.35432 -14.27603 -14.03664 -13.64429 -13.17391 -13.04533 -12.89480 -12.80483 -12.51014 -12.30782 -12.27989 -12.15183 -11.98304 -11.88153 -11.57611 -11.46543 -10.96614 -10.87679 -9.90794 -9.06100 -7.95878 -5.27269 -0.21002 0.20608 0.76735 1.46705 1.51723 1.54207 1.58571 1.79679 2.53337 2.61921 2.96714 3.36905 3.44403 3.72147 4.01373 4.04288 4.13092 4.13462 4.23967 4.25707 4.32212 4.45594 4.53901 4.57433 4.60505 4.72318 4.95563 4.99916 5.01545 5.06034 5.35734 5.47395 6.05666 6.24773 6.66622 6.95839 6.99344 7.31102 8.01831 8.28326 9.27402 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003728 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.570131 B = 7509.864671 C = 8257.780843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.056 5.056 4 N -0.256 5.256 5 C 0.122 3.878 6 C 0.604 3.396 7 O -0.549 6.549 8 N -0.570 5.570 9 C 0.093 3.907 10 C 0.075 3.925 11 O -0.590 6.590 12 C 0.132 3.868 13 C 0.148 3.852 14 N -0.741 5.741 15 C -0.254 4.254 16 H 0.074 0.926 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.980 3.020 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.280 1.280 23 N -0.265 5.265 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.128 0.872 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.004 0.996 35 H 0.032 0.968 36 H 0.376 0.624 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.335 17.754 7.880 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.029 5.029 3 N -0.049 5.049 4 N -0.131 5.131 5 C -0.161 4.161 6 C 0.387 3.613 7 O -0.423 6.423 8 N -0.301 5.301 9 C -0.029 4.029 10 C -0.003 4.003 11 O -0.398 6.398 12 C 0.009 3.991 13 C 0.020 3.980 14 N -0.385 5.385 15 C -0.385 4.385 16 H 0.092 0.908 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.807 3.193 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.206 1.206 23 N -0.120 5.120 24 H 0.149 0.851 25 H 0.164 0.836 26 H 0.146 0.854 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.050 0.950 36 H 0.209 0.791 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.699 17.360 7.190 29.467 hybrid contribution 0.690 -0.889 0.082 1.129 sum -22.009 16.471 7.272 28.435 Atomic orbital electron populations 1.23280 0.64900 1.09476 1.08767 1.50787 1.12713 0.99384 1.39988 1.78839 0.96303 1.14405 1.15388 1.76154 1.10481 1.09046 1.17408 1.24825 0.92749 0.90588 1.07920 1.16537 0.81627 0.85418 0.77700 1.90851 1.85769 1.15093 1.50612 1.47561 1.04347 1.08750 1.69448 1.22405 1.05586 0.76968 0.97932 1.22485 0.86945 0.98831 0.92059 1.86515 1.44981 1.76608 1.31721 1.21441 0.86703 0.94756 0.96180 1.20964 0.88703 0.93280 0.95065 1.42348 1.31196 1.59033 1.05907 1.19571 1.08177 1.24215 0.86557 0.90793 1.25641 0.98740 1.01062 1.01026 1.69815 1.22215 1.41209 1.28516 0.85134 0.77196 0.77959 0.78972 1.19926 1.21723 1.20570 1.75093 1.02429 1.15706 1.18790 0.85077 0.83610 0.85374 0.88503 0.85709 0.89473 0.94576 0.75630 0.88093 0.91498 0.97819 0.95002 0.79147 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.62 127.77 1.49 1.68 16 2 N -0.11 -1.90 4.39 -206.59 -0.91 -2.81 16 3 N -0.06 -1.09 13.23 37.02 0.49 -0.60 16 4 N -0.26 -6.05 8.04 -52.37 -0.42 -6.47 16 5 C 0.12 3.53 7.62 137.15 1.05 4.57 16 6 C 0.60 21.39 7.64 86.83 0.66 22.06 16 7 O -0.55 -23.89 16.65 -3.85 -0.06 -23.96 16 8 N -0.57 -18.54 2.43 -825.03 -2.01 -20.55 16 9 C 0.09 2.29 5.37 86.38 0.46 2.75 16 10 C 0.08 1.53 6.82 71.98 0.49 2.03 16 11 O -0.59 -13.44 13.26 -148.98 -1.97 -15.42 16 12 C 0.13 5.07 5.52 86.38 0.48 5.55 16 13 C 0.15 6.69 6.58 86.38 0.57 7.25 16 14 N -0.74 -40.93 5.60 -343.47 -1.92 -42.86 16 15 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 16 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 18 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 19 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 N -0.26 -6.83 12.17 -52.32 -0.64 -7.46 16 24 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.10 2.34 8.02 -2.39 -0.02 2.33 16 28 H 0.13 2.83 5.29 -2.38 -0.01 2.82 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 0.78 7.30 -2.39 -0.02 0.76 16 31 H 0.39 5.31 9.12 -74.05 -0.68 4.63 16 32 H 0.10 3.72 7.73 -2.38 -0.02 3.70 16 33 H 0.07 2.85 7.36 -2.39 -0.02 2.83 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.38 21.75 7.67 -92.71 -0.71 21.04 16 37 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -83.37 323.87 1.10 -82.26 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.26 Total: 21.36 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 6.50 Total: 27.81 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -5.12 Total: -141.75 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.04 Total: -39.37 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -83.37 1.10 -82.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484491419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.429 kcal (2) G-P(sol) polarization free energy of solvation -83.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds