Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 C 1.50698 * 109.47549 * 239.99543 * 2 1 3 5 5 H 1.07993 * 120.00823 * 240.00647 * 4 2 1 6 6 C 1.37880 * 119.99564 * 59.99750 * 4 2 1 7 7 N 1.31518 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00016 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47092 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47433 * 120.00217 * 8 6 4 11 11 H 1.48502 * 109.47495 * 240.00190 * 8 6 4 12 12 C 1.53002 * 109.47118 * 119.99738 * 2 1 3 13 13 N 1.46494 * 109.47166 * 299.99832 * 12 2 1 14 14 C 1.34783 * 120.00126 * 179.97438 * 13 12 2 15 15 O 1.21278 * 119.99733 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00026 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47066 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.46842 * 180.02562 * 17 16 14 19 19 C 1.47093 * 125.55889 * 90.00569 * 18 17 16 20 20 C 1.54091 * 103.77776 * 180.02562 * 19 18 17 21 21 O 1.45704 * 104.12991 * 359.92869 * 20 19 18 22 22 C 1.34001 * 125.56070 * 270.01636 * 18 17 16 23 23 O 1.21513 * 123.07229 * 0.03827 * 22 18 17 24 24 H 1.09001 * 109.46734 * 300.00277 * 1 2 3 25 25 H 1.08997 * 109.46794 * 60.00426 * 1 2 3 26 26 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47232 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46897 * 299.99511 * 3 2 1 29 29 H 1.09001 * 109.47501 * 60.00192 * 3 2 1 30 30 H 0.97007 * 119.99693 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47022 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.47141 * 60.00417 * 12 2 1 33 33 H 0.97003 * 120.00349 * 0.02562 * 13 12 2 34 34 H 1.09004 * 109.47083 * 60.00413 * 16 14 13 35 35 H 1.08996 * 109.47409 * 300.00047 * 16 14 13 36 36 H 1.09004 * 109.47022 * 60.00143 * 17 16 14 37 37 H 1.08996 * 109.46855 * 300.00154 * 17 16 14 38 38 H 1.09000 * 110.56724 * 61.43908 * 19 18 17 39 39 H 1.09004 * 110.68940 * 298.64853 * 19 18 17 40 40 H 1.09002 * 110.52360 * 118.62859 * 20 19 18 41 41 H 1.09002 * 110.51975 * 241.22721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5741 -1.4773 3.7809 16 6 1.3751 0.2196 4.9000 17 6 1.8850 -0.5017 6.1493 18 7 1.3966 0.1890 7.3454 19 6 0.1344 -0.0986 8.0438 20 6 0.1239 0.9066 9.2116 21 8 1.3683 1.6479 9.0540 22 6 2.0268 1.1859 7.9815 23 8 3.0979 1.6311 7.6195 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7095 1.1616 -3.4845 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7579 2.3564 34 1 0.2850 0.2204 4.9000 35 1 1.7392 1.2469 4.9000 36 1 2.9750 -0.5022 6.1491 37 1 1.5212 -1.5292 6.1494 38 1 0.1290 -1.1219 8.4191 39 1 -0.7175 0.0710 7.3852 40 1 -0.7325 1.5762 9.1318 41 1 0.1099 0.3821 10.1671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626124274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = -136.796602 kcal Electronic energy + Delta-G solvation = -22503.029525 eV Core-core repulsion = 18996.285797 eV Total energy + Delta-G solvation = -3506.743729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50766 -40.78535 -38.37183 -38.18458 -36.82068 -34.99393 -33.10143 -32.37238 -30.22509 -27.60009 -27.55938 -27.08797 -25.27582 -24.43184 -22.07776 -21.31383 -20.59192 -18.82940 -18.16505 -18.05169 -17.79072 -17.47246 -16.78683 -16.64851 -16.41307 -15.89572 -15.11946 -15.05378 -14.95104 -14.81964 -14.56784 -14.21423 -13.97813 -13.91456 -13.19800 -13.18296 -13.09997 -13.06819 -12.68990 -12.57438 -12.29571 -12.23212 -12.14054 -11.79078 -11.62147 -11.48367 -11.28338 -10.91100 -10.68234 -10.40391 -9.98323 -9.93133 -8.02937 -6.18556 1.34661 1.40802 1.45321 1.54437 1.58170 1.67940 2.34792 2.49714 2.68990 3.20810 3.39990 3.66374 3.75438 3.96047 4.09172 4.23166 4.42704 4.48298 4.52357 4.58024 4.65823 4.72363 4.79606 4.88609 4.96323 5.01075 5.06120 5.11301 5.19963 5.34067 5.37582 5.59869 5.67080 5.67685 6.15439 6.22281 6.32313 6.43537 6.65981 6.86282 6.89260 7.31156 7.49419 8.96017 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040996 B = 0.002859 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.837772 B = 9790.430253 C = 9857.390858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.147 3.853 13 N -0.711 5.711 14 C 0.510 3.490 15 O -0.591 6.591 16 C -0.146 4.146 17 C 0.167 3.833 18 N -0.623 5.623 19 C 0.059 3.941 20 C 0.035 3.965 21 O -0.349 6.349 22 C 0.635 3.365 23 O -0.579 6.579 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.409 0.591 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -0.343 21.594 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.209 1.209 12 C 0.023 3.977 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.472 6.472 16 C -0.187 4.187 17 C 0.046 3.954 18 N -0.370 5.370 19 C -0.063 4.063 20 C -0.039 4.039 21 O -0.259 6.259 22 C 0.389 3.611 23 O -0.468 6.468 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.323 -0.527 21.501 23.062 hybrid contribution 0.378 -0.105 -1.368 1.424 sum -7.945 -0.633 20.133 21.653 Atomic orbital electron populations 1.21659 0.96829 0.98813 1.00473 1.18358 0.93474 0.92803 0.90363 1.21691 0.97806 0.98121 1.00404 1.21324 1.31603 1.12139 0.91651 0.93771 1.25451 0.95160 0.95601 1.00975 1.69917 1.37083 1.23284 1.23523 0.85717 0.78150 0.78719 0.80276 1.20014 1.20595 1.20887 1.21259 0.96866 0.95249 0.84314 1.46159 1.52713 1.31931 1.05404 1.20997 0.79726 0.84174 0.85430 1.90674 1.40216 1.28766 1.87549 1.21980 1.04960 1.00890 0.90866 1.20911 0.99457 0.95607 0.79456 1.48122 1.23346 1.36162 1.29339 1.23266 0.86516 1.02143 0.94343 1.24800 0.83964 0.94104 1.00985 1.87343 1.36449 1.58331 1.43773 1.18823 0.83524 0.79511 0.79196 1.91017 1.21997 1.64499 1.69243 0.94171 0.92045 0.96056 0.96594 0.91909 0.94420 0.93051 0.94737 0.93910 0.75344 0.84939 0.88559 0.91614 0.86955 0.86486 0.86161 0.84969 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 4 C -0.53 -27.83 8.01 25.60 0.21 -27.62 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.46 5.15 84.65 0.44 1.90 16 7 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.15 6.12 4.50 86.38 0.39 6.50 16 13 N -0.71 -23.14 4.96 -463.06 -2.30 -25.44 16 14 C 0.51 15.66 7.83 87.66 0.69 16.35 16 15 O -0.59 -22.88 15.98 -3.02 -0.05 -22.93 16 16 C -0.15 -2.99 6.02 29.85 0.18 -2.81 16 17 C 0.17 3.42 5.30 86.38 0.46 3.88 16 18 N -0.62 -10.71 2.96 -951.01 -2.82 -13.52 16 19 C 0.06 0.32 7.70 86.64 0.67 0.98 16 20 C 0.03 0.18 8.22 72.35 0.59 0.78 16 21 O -0.35 -6.80 11.11 -50.08 -0.56 -7.36 16 22 C 0.64 16.00 8.85 129.91 1.15 17.15 16 23 O -0.58 -20.90 17.55 19.63 0.34 -20.55 16 24 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 25 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 30 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 31 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.41 11.46 6.16 -92.71 -0.57 10.89 16 34 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.80 7.89 -2.38 -0.02 1.78 16 37 H 0.11 1.92 8.10 -2.39 -0.02 1.90 16 38 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 40 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -74.14 336.50 3.22 -70.92 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.46 Total: 11.89 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.90 Total: 9.97 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -4.91 Total: -86.47 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.26 Total: -50.84 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.14 3.22 -70.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626124274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.876 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds