Wall clock time and date at job start Tue Mar 31 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48505 * 109.47569 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.47338 * 30.00861 * 3 2 1 6 6 H 1.48499 * 109.47186 * 150.00540 * 3 2 1 7 7 C 1.38808 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49684 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11861 * 155.35627 * 10 9 7 12 12 C 1.52995 * 113.74429 * 269.15328 * 11 10 9 13 13 C 1.52998 * 109.47442 * 172.36733 * 12 11 10 14 14 O 1.42894 * 109.47382 * 175.17587 * 13 12 11 15 15 N 1.46500 * 113.73922 * 137.94934 * 11 10 9 16 16 C 1.34778 * 119.99921 * 64.62610 * 15 11 10 17 17 O 1.21276 * 119.99821 * 354.92799 * 16 15 11 18 18 C 1.50700 * 120.00022 * 174.92374 * 16 15 11 19 19 H 1.09002 * 110.27025 * 54.36549 * 18 16 15 20 20 C 1.54941 * 110.39549 * 292.21857 * 18 16 15 21 21 C 1.55307 * 100.93973 * 204.59929 * 20 18 16 22 22 C 1.54373 * 102.25546 * 34.13052 * 21 20 18 23 23 O 1.43238 * 107.58978 * 338.64459 * 22 21 20 24 24 C 1.47587 * 134.49211 * 359.97438 * 9 7 2 25 25 H 0.97006 * 119.99468 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.76671 * 41.05749 * 10 9 7 27 27 H 1.08999 * 113.76472 * 269.66101 * 10 9 7 28 28 H 1.09002 * 109.47286 * 292.37078 * 12 11 10 29 29 H 1.09005 * 109.47321 * 52.36976 * 12 11 10 30 30 H 1.09000 * 109.47098 * 295.18131 * 13 12 11 31 31 H 1.09006 * 109.46806 * 55.17771 * 13 12 11 32 32 H 0.96702 * 114.00319 * 179.97438 * 14 13 12 33 33 H 0.96996 * 120.00353 * 244.62116 * 15 11 10 34 34 H 1.08997 * 111.12914 * 86.67657 * 20 18 16 35 35 H 1.09006 * 111.12481 * 322.51185 * 20 18 16 36 36 H 1.09002 * 110.84319 * 275.93855 * 21 20 18 37 37 H 1.09002 * 110.84909 * 152.32573 * 21 20 18 38 38 H 1.09003 * 109.83413 * 98.16027 * 22 21 20 39 39 H 1.09002 * 109.82980 * 219.03930 * 22 21 20 40 40 H 1.09003 * 113.76217 * 90.33780 * 24 9 7 41 41 H 1.08998 * 113.76959 * 318.95161 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6399 12 6 0.3645 -4.0562 2.1695 13 6 -1.0686 -4.1474 2.6977 14 8 -1.0460 -4.2357 4.1237 15 7 -0.3334 -5.2613 0.0970 16 6 0.2000 -6.4868 0.2701 17 8 1.2873 -6.6065 0.7939 18 6 -0.5547 -7.7085 -0.1871 19 1 -0.8236 -7.6145 -1.2392 20 6 -1.8248 -7.9132 0.6765 21 6 -2.0514 -9.4406 0.5099 22 6 -0.6072 -9.9781 0.4184 23 8 0.2354 -8.8898 0.0219 24 6 -0.1033 -2.7574 0.0004 25 1 -0.4850 0.8401 0.0004 26 1 2.5623 -4.0324 0.6547 27 1 1.8318 -4.2350 -0.9981 28 1 0.9431 -4.9019 2.5411 29 1 0.8192 -3.1265 2.5116 30 1 -1.6237 -3.2587 2.3973 31 1 -1.5516 -5.0338 2.2864 32 1 -1.9224 -4.2961 4.5280 33 1 -1.1678 -5.1595 -0.3871 34 1 -2.6659 -7.3455 0.2788 35 1 -1.6369 -7.6553 1.7188 36 1 -2.6033 -9.6532 -0.4057 37 1 -2.5648 -9.8535 1.3783 38 1 -0.2908 -10.3556 1.3908 39 1 -0.5560 -10.7761 -0.3223 40 1 -0.5279 -2.8726 -0.9969 41 1 -0.7164 -2.1393 0.6562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675058607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:11 Heat of formation + Delta-G solvation = -73.627354 kcal Electronic energy + Delta-G solvation = -23624.456947 eV Core-core repulsion = 20120.452442 eV Total energy + Delta-G solvation = -3504.004504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39175 -39.15377 -37.36704 -36.40132 -33.72455 -32.43890 -31.84769 -30.50900 -29.52804 -27.03641 -25.04739 -24.16592 -23.05338 -21.92444 -21.57583 -20.16119 -18.66182 -17.62140 -17.18491 -16.77405 -16.62828 -15.59224 -15.34038 -15.05133 -14.77963 -14.64998 -14.26283 -13.83411 -13.64816 -13.48097 -13.30874 -12.48892 -12.18861 -11.96884 -11.92311 -11.73507 -11.61770 -11.51678 -11.18451 -11.07136 -10.92320 -10.75395 -10.72422 -10.16507 -9.99023 -9.85446 -9.66134 -9.49747 -9.07241 -8.89611 -8.58991 -6.92528 -5.80744 -3.12229 2.84238 3.08315 3.39677 3.44940 3.46658 3.89730 4.18074 4.43934 4.46980 4.55153 4.67657 4.89546 4.90948 5.08435 5.21903 5.25718 5.37539 5.42574 5.46124 5.51351 5.54613 5.58914 5.70738 5.79657 5.82831 5.93237 6.33849 6.45867 6.54072 6.67151 6.72587 6.77251 6.84539 7.10977 7.31904 7.48146 7.82518 7.86931 7.94584 8.55392 9.01878 9.67602 10.54172 11.36963 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.004320 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.009419 B = 6479.758514 C = 6967.552347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.124 3.876 12 C -0.095 4.095 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.714 5.714 16 C 0.510 3.490 17 O -0.514 6.514 18 C 0.063 3.937 19 H 0.094 0.906 20 C -0.145 4.145 21 C -0.154 4.154 22 C 0.048 3.952 23 O -0.354 6.354 24 C 0.167 3.833 25 H 0.254 0.746 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.371 0.629 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -16.565 1.118 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.332 5.332 10 C 0.002 3.998 11 C 0.038 3.962 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.388 6.388 18 C 0.001 3.999 19 H 0.111 0.889 20 C -0.182 4.182 21 C -0.192 4.192 22 C -0.029 4.029 23 O -0.272 6.272 24 C 0.041 3.959 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.217 0.783 33 H 0.230 0.770 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.206 -16.278 1.398 18.283 hybrid contribution -0.897 0.864 -0.437 1.320 sum -9.103 -15.413 0.961 17.926 Atomic orbital electron populations 1.69786 1.05012 1.25404 1.56877 1.24756 0.95709 0.97512 1.02324 0.86093 0.78726 0.83256 0.77555 1.21635 1.21614 1.20524 1.19023 0.90364 0.81555 1.43672 0.89976 1.45683 1.01869 0.99587 1.86012 1.22793 0.94553 0.85434 0.96994 1.22948 0.95870 0.84333 0.93037 1.21328 0.95485 1.04202 0.92333 1.22140 0.98338 0.99084 0.79970 1.86507 1.33440 1.97306 1.20664 1.46120 1.27163 1.05921 1.57516 1.20318 0.86509 0.84091 0.79664 1.90716 1.19956 1.86076 1.42056 1.22886 0.90533 0.86371 1.00062 0.88891 1.23236 0.96878 0.96658 1.01477 1.23126 0.97466 0.95211 1.03348 1.23185 0.89234 0.90036 1.00420 1.88548 1.31853 1.17657 1.89136 1.22529 0.89096 0.87342 0.96916 0.93635 0.92958 0.94588 0.91018 0.89098 0.93197 0.94605 0.78297 0.77047 0.88985 0.89699 0.90192 0.89694 0.91139 0.91161 0.95184 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 11.38 55.49 0.63 -25.94 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -15.49 3.54 -177.71 -0.63 -16.11 16 10 C 0.13 2.87 7.41 -2.97 -0.02 2.85 16 11 C 0.12 2.36 0.67 -134.05 -0.09 2.27 16 12 C -0.09 -1.83 4.85 -26.73 -0.13 -1.96 16 13 C 0.08 1.30 6.86 37.16 0.25 1.55 16 14 O -0.57 -8.93 13.66 -35.23 -0.48 -9.41 16 15 N -0.71 -10.61 4.47 -49.09 -0.22 -10.83 16 16 C 0.51 8.10 6.85 -10.98 -0.08 8.02 16 17 O -0.51 -10.57 15.00 -13.76 -0.21 -10.78 16 18 C 0.06 0.75 3.86 -26.86 -0.10 0.65 16 19 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.14 -1.25 6.56 -24.48 -0.16 -1.41 16 21 C -0.15 -1.08 7.02 -24.79 -0.17 -1.25 16 22 C 0.05 0.45 7.79 37.88 0.30 0.75 16 23 O -0.35 -4.99 10.61 -54.56 -0.58 -5.56 16 24 C 0.17 3.72 6.71 -2.99 -0.02 3.70 16 25 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.47 7.24 -51.93 -0.38 1.10 16 29 H 0.09 2.02 8.02 -51.93 -0.42 1.61 16 30 H 0.05 0.80 7.61 -51.93 -0.40 0.40 16 31 H 0.04 0.49 7.53 -51.93 -0.39 0.10 16 32 H 0.37 3.72 9.12 45.56 0.42 4.14 16 33 H 0.40 4.58 8.72 -40.82 -0.36 4.22 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.98 6.58 -51.93 -0.34 1.63 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -35.11 336.57 -7.54 -42.66 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.63 Total: 5.24 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.48 Total: 8.58 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.22 Total: -52.89 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.27 Total: -25.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.11 -7.54 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675058607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.970 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds