Wall clock time and date at job start Tue Mar 31 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 H 1.08997 * 109.46588 * 304.99304 * 4 3 2 6 6 O 1.42896 * 109.47169 * 64.99772 * 4 3 2 7 7 C 1.52998 * 109.47162 * 184.99790 * 4 3 2 8 8 N 1.46499 * 109.47101 * 179.97438 * 7 4 3 9 9 C 1.36931 * 119.99959 * 180.02562 * 8 7 4 10 10 H 1.08006 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99699 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47440 * 59.99847 * 13 11 9 15 15 H 1.48506 * 109.46748 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46885 * 299.99404 * 13 11 9 17 17 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00463 * 179.97438 * 17 2 1 19 19 C 1.50700 * 119.99675 * 359.72090 * 17 2 1 20 20 N 1.46499 * 109.47257 * 180.27849 * 19 17 2 21 21 C 1.34599 * 126.44012 * 124.99824 * 20 19 17 22 22 N 1.31071 * 106.68205 * 180.02562 * 21 20 19 23 23 N 1.28849 * 107.99004 * 359.97438 * 22 21 20 24 24 N 1.28738 * 109.39356 * 359.73650 * 23 22 21 25 25 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 26 26 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 27 27 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 28 28 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 29 29 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 30 30 H 0.96704 * 114.00190 * 59.99884 * 6 4 3 31 31 H 1.08997 * 109.47290 * 299.99991 * 7 4 3 32 32 H 1.09003 * 109.47275 * 59.99501 * 7 4 3 33 33 H 0.97000 * 119.99982 * 359.97438 * 8 7 4 34 34 H 0.97007 * 120.00112 * 180.02562 * 12 11 9 35 35 H 1.09009 * 109.47352 * 300.27556 * 19 17 2 36 36 H 1.08998 * 109.47585 * 60.27844 * 19 17 2 37 37 H 1.07997 * 126.66069 * 0.03459 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 2.9642 0.9132 -1.9816 6 8 1.2059 1.9936 -2.0814 7 6 3.3237 2.9681 -1.4444 8 7 3.5683 3.3908 -2.8256 9 6 4.3293 4.5009 -3.0773 10 1 4.7489 5.0653 -2.2576 11 6 4.5606 4.9017 -4.3861 12 7 4.0489 4.2143 -5.3850 13 14 5.5994 6.4159 -4.7295 14 1 6.9602 6.2203 -4.1683 15 1 5.6940 6.6290 -6.1961 16 1 4.9689 7.6025 -4.0971 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 0.0053 20 7 2.3374 -3.5858 0.0102 21 6 2.3849 -4.5931 0.9016 22 7 3.3800 -5.3669 0.5424 23 7 3.9155 -4.8614 -0.5150 24 7 3.2842 -3.7884 -0.8426 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0283 0.5138 29 1 3.1500 1.1384 0.5137 30 1 0.6954 2.6950 -1.6541 31 1 2.8120 3.7654 -0.9053 32 1 4.2745 2.7522 -0.9571 33 1 3.1917 2.8837 -3.5618 34 1 4.2108 4.4942 -6.2996 35 1 0.7588 -2.5261 0.8956 36 1 0.7587 -2.5340 -0.8844 37 1 1.7301 -4.7362 1.7485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677055698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:39 Heat of formation + Delta-G solvation = 28.956478 kcal Electronic energy + Delta-G solvation = -22210.176890 eV Core-core repulsion = 18639.373162 eV Total energy + Delta-G solvation = -3570.803728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.16955 -41.21030 -38.95117 -36.59922 -36.39995 -35.83641 -33.48284 -33.26932 -31.57470 -29.87035 -27.87094 -26.80104 -25.03026 -24.78716 -23.94250 -22.73465 -20.73046 -19.27537 -18.91823 -18.59575 -17.71900 -17.55363 -17.12229 -16.92526 -16.49499 -16.45135 -16.05938 -15.61381 -15.00364 -14.60735 -14.52311 -14.18820 -13.83168 -13.65562 -13.56609 -13.24178 -13.14560 -12.99248 -12.75156 -12.60843 -12.25302 -12.21115 -12.15117 -12.04960 -11.85101 -11.50318 -11.28256 -11.00245 -10.90001 -9.63316 -9.05241 -7.97477 -5.28023 0.27474 0.97705 1.25727 1.35276 1.44342 1.48632 1.54744 1.90556 2.53213 3.09895 3.33428 3.45010 3.46059 3.50712 3.72209 3.93022 3.97947 4.00968 4.14774 4.33210 4.38300 4.45327 4.52451 4.68910 4.71469 4.85689 4.88237 5.07243 5.14921 5.23655 5.40438 5.44207 6.21904 6.23170 6.88580 6.95438 7.29344 7.57948 8.05346 8.27968 9.25721 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.003276 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.814598 B = 8544.904172 C = 9228.263331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.099 3.901 4 C 0.104 3.896 5 H 0.058 0.942 6 O -0.559 6.559 7 C 0.122 3.878 8 N -0.742 5.742 9 C -0.252 4.252 10 H 0.078 0.922 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.272 1.272 17 C 0.486 3.514 18 O -0.576 6.576 19 C 0.098 3.902 20 N -0.300 5.300 21 C 0.186 3.814 22 N -0.348 5.348 23 N -0.121 5.121 24 N -0.103 5.103 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.385 0.615 31 H 0.044 0.956 32 H 0.017 0.983 33 H 0.374 0.626 34 H 0.252 0.748 35 H 0.211 0.789 36 H 0.162 0.838 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.073 -12.677 19.825 29.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.326 5.326 3 C -0.025 4.025 4 C 0.044 3.956 5 H 0.076 0.924 6 O -0.366 6.366 7 C -0.005 4.005 8 N -0.385 5.385 9 C -0.384 4.384 10 H 0.095 0.905 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.806 3.194 14 H -0.206 1.206 15 H -0.221 1.221 16 H -0.197 1.197 17 C 0.273 3.727 18 O -0.455 6.455 19 C -0.025 4.025 20 N -0.102 5.102 21 C -0.111 4.111 22 N -0.195 5.195 23 N -0.115 5.115 24 N -0.091 5.091 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.234 0.766 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.206 0.794 34 H 0.060 0.940 35 H 0.228 0.772 36 H 0.179 0.821 37 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges -16.087 -13.382 18.672 28.045 hybrid contribution 0.094 1.537 -0.193 1.551 sum -15.992 -11.846 18.479 27.158 Atomic orbital electron populations 1.22365 0.75439 1.05763 1.04405 1.47743 1.09176 1.04144 1.71586 1.22028 0.99014 0.86132 0.95308 1.22152 0.84630 0.95104 0.93749 0.92402 1.86592 1.31753 1.59829 1.58402 1.21449 0.97020 0.95285 0.86795 1.42450 1.61581 1.31643 1.02807 1.19639 1.23413 1.03127 0.92197 0.90453 1.25667 1.02989 1.02817 0.95491 1.69849 1.50961 1.42825 0.98375 0.85150 0.78588 0.79301 0.76329 1.20602 1.22101 1.19731 1.21028 0.87895 0.86872 0.76890 1.90871 1.16243 1.87546 1.50799 1.22621 0.88348 0.78793 1.12720 1.48484 1.22743 1.20713 1.18297 1.28857 0.99147 0.84633 0.98494 1.74861 1.09266 1.26565 1.08857 1.78671 1.20896 1.02825 1.09152 1.79015 0.99921 1.13574 1.16546 0.88608 0.89915 0.88561 0.85768 0.90655 0.76561 0.93809 0.96494 0.79421 0.93969 0.77247 0.82104 0.68391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 10.06 127.77 1.28 1.52 16 2 N -0.59 -8.89 2.84 -846.76 -2.40 -11.29 16 3 C 0.10 2.06 5.06 86.38 0.44 2.49 16 4 C 0.10 3.27 3.30 30.60 0.10 3.38 16 5 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 6 O -0.56 -16.22 11.91 -148.98 -1.77 -17.99 16 7 C 0.12 4.80 5.92 86.38 0.51 5.31 16 8 N -0.74 -39.34 5.49 -343.45 -1.89 -41.23 16 9 C -0.25 -14.55 9.99 84.04 0.84 -13.71 16 10 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 11 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 12 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 13 Si 0.98 47.22 29.55 68.60 2.03 49.24 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 C 0.49 9.45 7.69 87.66 0.67 10.12 16 18 O -0.58 -19.23 15.29 -3.04 -0.05 -19.28 16 19 C 0.10 0.72 5.52 85.63 0.47 1.19 16 20 N -0.30 -5.26 3.19 -355.56 -1.13 -6.40 16 21 C 0.19 2.40 12.79 180.27 2.31 4.71 16 22 N -0.35 -8.76 12.36 -60.30 -0.75 -9.50 16 23 N -0.12 -3.98 13.43 37.01 0.50 -3.48 16 24 N -0.10 -3.16 12.30 37.02 0.46 -2.70 16 25 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.08 0.48 7.11 -2.39 -0.02 0.46 16 27 H 0.10 -0.11 6.45 -2.39 -0.02 -0.12 16 28 H 0.12 1.62 8.07 -2.39 -0.02 1.60 16 29 H 0.08 1.91 7.42 -2.39 -0.02 1.89 16 30 H 0.39 7.89 9.04 -74.05 -0.67 7.22 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.37 21.74 7.54 -92.71 -0.70 21.04 16 34 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 35 H 0.21 -1.45 8.04 -2.38 -0.02 -1.47 16 36 H 0.16 0.44 7.41 -2.39 -0.02 0.42 16 37 H 0.30 -0.97 8.06 -2.91 -0.02 -0.99 16 Total: -1.00 -99.77 324.42 2.12 -97.65 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.25 Total: 15.60 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.09 Total: 10.88 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -4.93 Total: -136.11 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.82 Total: -37.27 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -99.77 2.12 -97.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677055698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.611 kcal (2) G-P(sol) polarization free energy of solvation -99.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds