Wall clock time and date at job start Tue Mar 31 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27647 * 125.77061 * 2 1 4 4 O 1.41376 * 113.17237 * 179.69797 * 3 2 1 5 5 C 1.44251 * 107.50872 * 17.36981 * 4 3 2 6 6 H 1.08993 * 111.04692 * 216.81005 * 5 4 3 7 7 C 1.53004 * 111.00965 * 92.95688 * 5 4 3 8 8 N 1.46499 * 109.47198 * 72.84228 * 7 5 4 9 9 C 1.34777 * 119.99665 * 180.27868 * 8 7 5 10 10 O 1.21583 * 120.00270 * 359.72083 * 9 8 7 11 11 N 1.34775 * 119.99585 * 179.72218 * 9 8 7 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46959 * 180.02562 * 12 11 9 14 14 O 1.21287 * 120.00116 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99464 * 180.02562 * 13 12 11 16 16 C 1.37103 * 119.99695 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00128 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00087 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47186 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47137 * 120.00292 * 20 18 16 23 23 H 1.48499 * 109.47678 * 240.00356 * 20 18 16 24 24 C 1.51690 * 125.77064 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46649 * 269.97865 * 1 2 3 26 26 H 1.08997 * 109.47179 * 29.97351 * 1 2 3 27 27 H 1.09001 * 109.47178 * 149.97811 * 1 2 3 28 28 H 1.09009 * 109.46730 * 312.84016 * 7 5 4 29 29 H 1.08998 * 109.46846 * 192.84560 * 7 5 4 30 30 H 0.97001 * 119.99790 * 359.97438 * 8 7 5 31 31 H 0.97000 * 120.00523 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.47039 * 300.00042 * 12 11 9 33 33 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 34 34 H 0.96995 * 120.00581 * 0.02562 * 15 13 12 35 35 H 0.97000 * 120.00069 * 180.02562 * 19 18 16 36 36 H 1.08996 * 110.80322 * 46.44775 * 24 2 1 37 37 H 1.08998 * 110.80227 * 282.94565 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7273 0.0069 5 6 3.7717 -0.6499 -0.3990 6 1 4.5759 -1.1404 0.1493 7 6 3.9964 -0.7569 -1.9087 8 7 5.3530 -0.3094 -2.2334 9 6 5.7748 -0.3109 -3.5135 10 8 5.0311 -0.6885 -4.3982 11 7 7.0209 0.1061 -3.8129 12 6 7.4796 0.1040 -5.2043 13 6 8.8972 0.6115 -5.2667 14 8 9.4683 0.9420 -4.2490 15 7 9.5302 0.6981 -6.4533 16 6 10.8197 1.1603 -6.5102 17 1 11.3283 1.4546 -5.6041 18 6 11.4727 1.2491 -7.7335 19 7 10.8539 0.8906 -8.8361 20 14 13.2298 1.8782 -7.8109 21 1 13.6964 2.2132 -6.4415 22 1 14.1065 0.8282 -8.3891 23 1 13.2838 3.0927 -8.6636 24 6 2.3937 -1.2308 -0.0006 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 3.2725 -0.1297 -2.4291 29 1 3.8709 -1.7933 -2.2221 30 1 5.9462 -0.0078 -1.5277 31 1 7.6144 0.4070 -3.1071 32 1 7.4399 -0.9115 -5.5984 33 1 6.8353 0.7504 -5.8002 34 1 9.0733 0.4342 -7.2672 35 1 11.3098 0.9522 -9.6900 36 1 2.0503 -1.9549 -0.7393 37 1 2.4347 -1.6787 0.9923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682373188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:45 Heat of formation + Delta-G solvation = -49.496943 kcal Electronic energy + Delta-G solvation = -21323.360727 eV Core-core repulsion = 17716.862253 eV Total energy + Delta-G solvation = -3606.498475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77134 -39.68608 -38.17849 -35.18450 -34.38287 -34.02491 -33.62817 -31.50211 -31.28746 -28.85542 -27.98592 -26.12977 -24.30648 -22.26631 -20.75452 -20.12847 -19.56854 -18.42922 -17.97189 -17.22746 -16.49119 -15.76970 -15.70487 -15.39881 -15.22059 -14.69843 -14.36954 -14.28855 -13.97620 -13.87289 -13.47846 -13.35548 -13.28114 -12.95285 -12.69918 -12.16519 -12.09938 -11.90541 -11.81730 -11.61754 -11.12924 -10.98258 -10.39484 -10.31302 -10.07933 -9.77854 -9.63010 -9.21026 -8.60644 -8.60509 -8.08167 -6.49757 -3.91638 1.44295 2.59621 2.88929 3.11624 3.23744 3.30708 3.39282 3.64734 3.77086 4.00629 4.07829 4.13899 4.18724 4.50739 4.67938 4.87775 4.92102 4.94797 5.02715 5.04746 5.18935 5.19869 5.41215 5.54436 5.67130 5.92890 6.02515 6.10115 6.41836 6.76349 7.05443 7.08221 7.48018 7.94575 8.22926 8.47143 8.78354 9.06604 9.41517 9.89438 10.67277 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.052273 B = 0.002401 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.523287 B =11657.580524 C =11893.694630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.079 3.921 3 N -0.290 5.290 4 O -0.191 6.191 5 C 0.027 3.973 6 H 0.123 0.877 7 C 0.131 3.869 8 N -0.745 5.745 9 C 0.706 3.294 10 O -0.599 6.599 11 N -0.723 5.723 12 C 0.128 3.872 13 C 0.429 3.571 14 O -0.597 6.597 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.145 4.145 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.400 0.600 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 -6.414 15.939 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 N -0.033 5.033 4 O -0.209 6.209 5 C -0.032 4.032 6 H 0.141 0.859 7 C 0.005 3.995 8 N -0.402 5.402 9 C 0.406 3.594 10 O -0.479 6.479 11 N -0.380 5.380 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.484 6.484 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.184 4.184 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.245 0.755 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.812 -5.322 15.609 25.017 hybrid contribution 1.273 -0.563 -0.097 1.395 sum -17.539 -5.886 15.512 24.143 Atomic orbital electron populations 1.20434 0.85240 1.04670 1.04134 1.26332 0.98271 0.92173 0.94714 1.77939 0.89356 1.23290 1.12689 1.91341 1.15723 1.26866 1.86959 1.24007 0.98803 0.84554 0.95831 0.85917 1.21499 0.84159 1.00910 0.92883 1.44855 1.15611 1.72304 1.07410 1.15801 0.82154 0.78780 0.82672 1.90899 1.55568 1.55019 1.46374 1.44754 1.13563 1.69569 1.10133 1.20791 0.94725 1.02313 0.82160 1.19763 0.87823 0.85972 0.84957 1.90492 1.67916 1.55732 1.34234 1.41795 1.13754 1.55905 1.07037 1.19780 0.88616 1.39883 0.95039 0.87631 1.25333 1.00528 0.97254 0.94713 1.69625 1.38186 1.47163 0.98536 0.85751 0.81363 0.78294 0.78634 1.19143 1.20641 1.20620 1.23107 0.91417 0.98787 1.05137 0.89255 0.89673 0.89418 0.91237 0.90156 0.76593 0.75510 0.89994 0.89997 0.77014 0.91661 0.87379 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.49 36.00 0.38 0.06 16 2 C 0.08 0.57 7.45 -78.57 -0.59 -0.01 16 3 N -0.29 -3.28 12.45 35.65 0.44 -2.83 16 4 O -0.19 -2.28 12.24 -11.36 -0.14 -2.42 16 5 C 0.03 0.22 3.86 -25.80 -0.10 0.12 16 6 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 7 C 0.13 1.39 5.38 -4.04 -0.02 1.37 16 8 N -0.75 -9.53 5.56 -65.22 -0.36 -9.89 16 9 C 0.71 11.97 8.57 -86.92 -0.74 11.23 16 10 O -0.60 -12.05 16.34 5.29 0.09 -11.96 16 11 N -0.72 -12.66 5.53 -66.41 -0.37 -13.02 16 12 C 0.13 2.46 6.15 -5.19 -0.03 2.43 16 13 C 0.43 10.05 7.85 -10.99 -0.09 9.96 16 14 O -0.60 -15.55 15.24 5.55 0.08 -15.46 16 15 N -0.55 -13.85 5.29 -10.96 -0.06 -13.91 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 17 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.89 -24.13 13.05 55.50 0.72 -23.41 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.14 -0.78 6.62 -26.47 -0.18 -0.95 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.40 4.34 8.49 -40.82 -0.35 3.99 16 31 H 0.41 6.95 7.45 -40.82 -0.30 6.64 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.59 7.90 -40.82 -0.32 9.26 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.11 0.39 7.90 -51.93 -0.41 -0.02 16 37 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -35.17 328.59 -5.96 -41.13 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -4.70 Total: 14.85 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -1.61 Total: 16.26 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.38 Total: -63.07 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.03 Total: -29.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.17 -5.96 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.368 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds