Wall clock time and date at job start Tue Mar 31 2020 03:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21272 * 120.00513 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99846 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47148 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.77011 * 305.70294 * 10 9 7 12 12 C 1.54569 * 110.86429 * 69.22498 * 10 9 7 13 13 O 1.46162 * 104.28554 * 144.85674 * 12 10 9 14 14 C 1.34060 * 110.02974 * 329.67278 * 13 12 10 15 15 O 1.20820 * 125.09542 * 200.67849 * 14 13 12 16 16 C 1.51329 * 109.81020 * 20.68490 * 14 13 12 17 17 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 18 18 C 1.36943 * 119.99752 * 274.72222 * 17 3 2 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 3 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 3 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 28 28 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 29 29 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 30 30 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 31 31 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 32 32 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 33 33 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47068 * 300.00700 * 9 7 6 35 35 H 1.09008 * 109.46877 * 60.00083 * 9 7 6 36 36 H 1.09000 * 110.44263 * 263.75010 * 12 10 9 37 37 H 1.08999 * 110.44030 * 26.27298 * 12 10 9 38 38 H 1.09002 * 110.36277 * 238.84796 * 16 14 13 39 39 H 1.08997 * 110.37105 * 116.51802 * 16 14 13 40 40 H 0.97001 * 120.00384 * 95.00578 * 17 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1634 2.1484 -0.2592 9 6 5.8984 4.4747 0.0368 10 6 7.4232 4.4765 -0.0890 11 1 7.8711 3.7898 0.6294 12 6 7.8571 4.1255 -1.5304 13 8 9.0524 4.9361 -1.7547 14 6 8.9772 6.0712 -1.0456 15 8 9.6049 7.0774 -1.2764 16 6 7.9883 5.9035 0.0875 17 7 1.6525 2.0974 1.2518 18 6 0.4178 2.6784 1.3668 19 1 -0.2719 2.6498 0.5362 20 6 0.0527 3.3040 2.5509 21 7 0.8936 3.3393 3.5630 22 14 -1.6317 4.0959 2.7081 23 1 -2.3821 3.9193 1.4389 24 1 -2.3795 3.4527 3.8182 25 1 -1.4730 5.5448 2.9923 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9955 0.8311 0.6660 32 1 3.8500 1.0376 -1.0960 33 1 3.4412 3.5482 0.1314 34 1 5.4674 5.0883 -0.7543 35 1 5.6137 4.8808 1.0075 36 1 8.0921 3.0641 -1.6095 37 1 7.0755 4.3971 -2.2400 38 1 7.1894 6.6406 0.0060 39 1 8.4936 5.9951 1.0489 40 1 2.2720 2.1232 1.9978 41 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753469716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:37 Heat of formation + Delta-G solvation = -144.843400 kcal Electronic energy + Delta-G solvation = -22447.992717 eV Core-core repulsion = 18940.900053 eV Total energy + Delta-G solvation = -3507.092664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04990 -40.58588 -38.65490 -38.18984 -35.30429 -35.07109 -34.09424 -31.49705 -30.44780 -29.17606 -27.89552 -25.51478 -24.06720 -22.42373 -22.27217 -21.57914 -20.86351 -19.22945 -18.50118 -17.87484 -17.48777 -17.27783 -16.94055 -16.74114 -16.18752 -15.79494 -15.34839 -15.01825 -14.86916 -14.57524 -14.55695 -14.33054 -13.94515 -13.80429 -13.34454 -12.95372 -12.92135 -12.77922 -12.73633 -12.33732 -12.27773 -12.18799 -12.03953 -11.83946 -11.58218 -11.53097 -11.33572 -11.30795 -10.92582 -10.69709 -9.90807 -8.94016 -7.85629 -5.11775 0.98490 1.50882 1.54762 1.61051 1.75861 2.26759 2.34208 2.62146 2.98145 3.30802 3.49104 3.63591 3.76513 3.94143 4.01633 4.10381 4.31141 4.42845 4.46054 4.51975 4.55392 4.61424 4.68154 4.74278 4.84302 4.88530 4.92728 5.11559 5.14724 5.17335 5.24036 5.53733 5.63520 5.66128 5.73760 5.74296 6.35539 6.36961 6.70931 7.35608 7.43950 8.16000 8.40538 9.37297 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019639 B = 0.003514 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.366720 B = 7965.278840 C = 9057.175453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.123 3.877 6 N -0.713 5.713 7 C 0.506 3.494 8 O -0.583 6.583 9 C -0.127 4.127 10 C -0.097 4.097 11 H 0.101 0.899 12 C 0.062 3.938 13 O -0.370 6.370 14 C 0.482 3.518 15 O -0.507 6.507 16 C -0.170 4.170 17 N -0.727 5.727 18 C -0.213 4.213 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.954 3.046 23 H -0.268 1.268 24 H -0.305 1.305 25 H -0.298 1.298 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.373 0.627 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 0.762 -8.980 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.056 3.944 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.364 5.364 7 C 0.294 3.706 8 O -0.465 6.465 9 C -0.166 4.166 10 C -0.116 4.116 11 H 0.120 0.880 12 C -0.011 4.011 13 O -0.287 6.287 14 C 0.326 3.674 15 O -0.395 6.395 16 C -0.208 4.208 17 N -0.367 5.367 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.618 5.618 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.233 1.233 25 H -0.225 1.225 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.205 0.795 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.980 0.553 -9.434 13.036 hybrid contribution -1.153 0.516 0.982 1.600 sum 7.827 1.070 -8.452 11.569 Atomic orbital electron populations 1.21703 0.96154 1.00493 1.01762 1.22007 0.96502 0.97712 1.00946 1.20708 0.91319 0.92970 0.89434 0.92319 1.21501 0.94009 0.83393 1.01290 1.46025 1.07730 1.10351 1.72270 1.21111 0.81885 0.92191 0.75450 1.90661 1.56433 1.47929 1.51443 1.21737 0.94146 0.93218 1.07523 1.22164 0.95549 0.96312 0.97620 0.88028 1.24513 0.83676 0.96053 0.96905 1.87043 1.43740 1.31494 1.66397 1.23690 0.80458 0.80592 0.82684 1.90685 1.47980 1.28280 1.72513 1.22983 0.99887 0.98692 0.99200 1.42574 1.15882 1.65853 1.12426 1.19515 0.92693 1.24811 0.97494 0.90323 1.25297 1.00651 1.03535 0.96734 1.69794 1.36643 1.50933 1.04388 0.85343 0.81251 0.77526 0.77271 1.19198 1.23330 1.22546 0.93055 0.93320 0.93195 0.90753 0.93737 0.93360 0.90297 0.75206 0.85678 0.86040 0.86648 0.88203 0.84273 0.84821 0.79465 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.18 71.98 0.66 -3.89 16 2 C -0.13 -3.94 5.61 30.60 0.17 -3.77 16 3 C 0.16 5.25 2.59 44.99 0.12 5.36 16 4 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 5 C 0.12 3.48 5.23 86.38 0.45 3.93 16 6 N -0.71 -18.46 5.39 -463.07 -2.49 -20.96 16 7 C 0.51 11.95 7.64 87.66 0.67 12.62 16 8 O -0.58 -17.16 14.95 -3.00 -0.04 -17.21 16 9 C -0.13 -1.85 5.00 29.85 0.15 -1.70 16 10 C -0.10 -1.44 2.75 -9.75 -0.03 -1.47 16 11 H 0.10 1.70 7.97 -2.39 -0.02 1.68 16 12 C 0.06 1.05 6.67 72.52 0.48 1.53 16 13 O -0.37 -8.39 11.06 -50.12 -0.55 -8.94 16 14 C 0.48 10.69 8.58 71.44 0.61 11.30 16 15 O -0.51 -15.17 18.00 21.66 0.39 -14.78 16 16 C -0.17 -2.22 6.52 30.56 0.20 -2.03 16 17 N -0.73 -30.23 4.50 -322.94 -1.45 -31.69 16 18 C -0.21 -10.04 7.76 84.03 0.65 -9.39 16 19 H 0.08 3.59 7.33 -2.91 -0.02 3.57 16 20 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 21 N -0.97 -53.76 13.06 21.65 0.28 -53.47 16 22 Si 0.95 42.45 29.55 68.60 2.03 44.48 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.31 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.89 6.01 -2.39 -0.01 1.88 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.41 10.81 8.14 -92.71 -0.75 10.05 16 34 H 0.13 1.22 8.01 -2.39 -0.02 1.20 16 35 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.12 2.14 7.67 -2.39 -0.02 2.12 16 37 H 0.10 1.38 7.82 -2.39 -0.02 1.36 16 38 H 0.14 1.25 7.80 -2.39 -0.02 1.23 16 39 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.37 17.38 7.80 -92.71 -0.72 16.66 16 41 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -65.15 340.96 2.33 -62.82 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.43 Total: 30.36 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.61 Total: 9.38 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.67 Total: -106.12 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.21 Total: -40.93 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.15 2.33 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.024 kcal (2) G-P(sol) polarization free energy of solvation -65.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds