Wall clock time and date at job start Tue Mar 31 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99867 * 2 1 4 4 H 1.48498 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46689 * 299.99551 * 3 2 1 6 6 H 1.48494 * 109.47139 * 59.99841 * 3 2 1 7 7 C 1.38807 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99981 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.30998 * 119.99851 * 127.00695 * 11 10 9 13 13 C 1.50702 * 120.00172 * 7.56082 * 12 11 10 14 14 N 1.46497 * 109.46908 * 127.15413 * 13 12 11 15 15 C 1.34777 * 119.99614 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.99671 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.46894 * 179.97438 * 17 15 14 19 19 O 1.42969 * 109.47225 * 294.99709 * 18 17 15 20 20 C 1.43087 * 113.77068 * 181.20410 * 19 18 17 21 21 C 1.53258 * 108.94133 * 57.96994 * 20 19 18 22 22 C 1.53258 * 108.84863 * 305.47437 * 21 20 19 23 23 O 1.42966 * 109.47323 * 174.99861 * 18 17 15 24 24 H 0.97006 * 119.99951 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00191 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.46832 * 60.00672 * 10 9 7 27 27 H 1.08992 * 109.47366 * 300.00340 * 10 9 7 28 28 H 1.08003 * 119.99726 * 307.00977 * 11 10 9 29 29 H 1.08002 * 120.00002 * 187.55952 * 12 11 10 30 30 H 1.08993 * 109.47292 * 247.15791 * 13 12 11 31 31 H 1.09000 * 109.46967 * 7.15681 * 13 12 11 32 32 H 0.96999 * 120.00440 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.46986 * 299.99538 * 17 15 14 34 34 H 1.09000 * 109.47269 * 59.99869 * 17 15 14 35 35 H 1.09006 * 109.47418 * 54.99987 * 18 17 15 36 36 H 1.08999 * 109.56178 * 298.13307 * 20 19 18 37 37 H 1.09003 * 109.55951 * 177.80814 * 20 19 18 38 38 H 1.09004 * 109.57975 * 185.66232 * 21 20 19 39 39 H 1.09009 * 109.68110 * 65.34963 * 21 20 19 40 40 H 1.08996 * 109.55879 * 294.68602 * 22 21 20 41 41 H 1.08999 * 109.65036 * 174.41046 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0788 -4.8022 0.0022 12 6 1.1719 -5.7440 -0.9036 13 6 2.3536 -5.7763 -1.8383 14 7 2.9752 -7.1021 -1.7939 15 6 4.0571 -7.3648 -2.5535 16 8 4.5162 -6.5036 -3.2735 17 6 4.6963 -8.7289 -2.5082 18 6 5.8960 -8.7617 -3.4572 19 8 5.4431 -8.6007 -4.8037 20 6 6.4933 -8.6449 -5.7745 21 6 7.2314 -9.9821 -5.6484 22 6 7.6984 -10.1552 -4.1990 23 8 6.5716 -10.0150 -3.3282 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0016 26 1 2.6854 -3.7141 0.8912 27 1 2.6841 -3.7149 -0.8887 28 1 0.3003 -4.8466 0.7495 29 1 0.4018 -6.4973 -0.9804 30 1 2.0192 -5.5657 -2.8541 31 1 3.0801 -5.0239 -1.5316 32 1 2.6082 -7.7908 -1.2178 33 1 5.0302 -8.9401 -1.4923 34 1 3.9697 -9.4810 -2.8156 35 1 6.5810 -7.9521 -3.2050 36 1 7.1897 -7.8255 -5.5964 37 1 6.0696 -8.5549 -6.7748 38 1 8.0952 -9.9867 -6.3133 39 1 6.5604 -10.7985 -5.9159 40 1 8.4404 -9.3930 -3.9612 41 1 8.1375 -11.1445 -4.0710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754116255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:17 Heat of formation + Delta-G solvation = -97.893892 kcal Electronic energy + Delta-G solvation = -21772.513814 eV Core-core repulsion = 18267.457033 eV Total energy + Delta-G solvation = -3505.056780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44180 -39.34851 -36.57078 -35.92049 -34.48417 -33.51890 -32.81571 -30.77751 -30.13691 -26.63805 -26.29013 -24.99207 -23.53679 -22.47484 -21.48980 -20.46258 -18.76460 -17.85211 -17.09967 -16.96921 -16.67461 -16.18769 -15.93850 -15.43131 -15.18128 -15.05272 -14.57960 -14.25113 -13.65383 -13.60592 -13.38796 -13.25394 -13.15741 -12.72040 -12.52521 -12.11014 -11.87159 -11.72249 -11.42901 -11.41312 -10.95436 -10.80396 -10.40968 -10.33082 -9.99847 -9.98553 -9.91091 -9.76911 -9.14467 -9.01332 -8.58456 -6.91131 -5.76211 -3.05322 2.25026 2.64250 2.95049 3.37681 3.45089 3.50774 3.53163 3.68399 4.35048 4.36697 4.48464 4.62273 4.65552 4.74071 4.91750 4.95566 5.04976 5.08415 5.18233 5.31554 5.36371 5.37834 5.47526 5.57198 5.66354 5.71597 5.92042 5.98159 6.26535 6.35660 6.51571 6.55327 6.60065 6.88529 6.88998 7.15842 7.50080 7.71541 8.22812 8.42294 9.53729 10.09707 10.45076 11.46675 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.002558 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.460751 B =10943.272121 C =11615.238431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.141 3.859 14 N -0.724 5.724 15 C 0.516 3.484 16 O -0.528 6.528 17 C -0.128 4.128 18 C 0.263 3.737 19 O -0.377 6.377 20 C 0.058 3.942 21 C -0.194 4.194 22 C 0.059 3.941 23 O -0.397 6.397 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.399 0.601 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 -24.745 -7.241 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.218 4.218 13 C 0.019 3.981 14 N -0.376 5.376 15 C 0.301 3.699 16 O -0.404 6.404 17 C -0.168 4.168 18 C 0.168 3.832 19 O -0.298 6.298 20 C -0.019 4.019 21 C -0.232 4.232 22 C -0.017 4.017 23 O -0.318 6.318 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.335 -24.078 -7.689 28.125 hybrid contribution 0.155 0.666 0.124 0.695 sum 12.490 -23.412 -7.565 27.592 Atomic orbital electron populations 1.69677 1.05138 1.25597 1.57750 1.24762 0.95570 0.97769 1.02926 0.86087 0.78827 0.83938 0.77188 1.20474 1.21794 1.21829 1.19293 0.91125 0.83977 1.42675 0.91010 1.42283 1.05918 0.99528 1.89501 1.20015 0.93004 0.84764 0.98746 1.23293 0.99092 0.94763 0.95777 1.22595 0.98842 1.02101 0.98269 1.20559 0.94024 0.83919 0.99587 1.45974 1.30659 1.15461 1.45462 1.20137 0.80633 0.89205 0.79947 1.90759 1.62611 1.47815 1.39229 1.21456 0.97572 0.96832 1.00905 1.22875 0.92095 0.85113 0.83117 1.88177 1.33474 1.92411 1.15698 1.22620 0.90365 0.95503 0.93395 1.22815 1.02157 0.99949 0.98244 1.22635 0.87705 1.02769 0.88622 1.88044 1.43920 1.38590 1.61197 0.93526 0.78162 0.95430 0.94646 0.86895 0.87037 0.91058 0.89330 0.76688 0.86603 0.87264 0.91618 0.92640 0.88299 0.89715 0.90025 0.92690 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.73 -18.94 5.59 -61.08 -0.34 -19.28 16 10 C 0.16 3.31 6.35 -5.19 -0.03 3.28 16 11 C -0.11 -1.78 9.63 -36.02 -0.35 -2.13 16 12 C -0.20 -2.70 9.63 -36.02 -0.35 -3.05 16 13 C 0.14 2.03 5.76 -5.19 -0.03 2.00 16 14 N -0.72 -8.29 5.55 -61.47 -0.34 -8.64 16 15 C 0.52 6.68 7.71 -10.98 -0.08 6.59 16 16 O -0.53 -9.21 15.42 -8.83 -0.14 -9.35 16 17 C -0.13 -1.21 5.78 -27.88 -0.16 -1.37 16 18 C 0.26 2.93 2.80 37.16 0.10 3.03 16 19 O -0.38 -4.75 9.77 -64.75 -0.63 -5.39 16 20 C 0.06 0.53 6.96 37.29 0.26 0.79 16 21 C -0.19 -1.32 6.35 -26.46 -0.17 -1.49 16 22 C 0.06 0.43 6.96 37.29 0.26 0.69 16 23 O -0.40 -4.01 10.54 -59.03 -0.62 -4.64 16 24 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.38 10.46 7.66 -40.82 -0.31 10.14 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.74 5.29 -51.93 -0.27 0.47 16 28 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.48 5.30 -51.93 -0.28 1.20 16 32 H 0.40 3.24 8.46 -40.82 -0.35 2.90 16 33 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -35.18 342.56 -8.24 -43.42 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.24 Total: 8.06 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.79 Total: 0.80 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.04 Total: -55.86 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.39 Total: -19.37 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.18 -8.24 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754116255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.470 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds