Wall clock time and date at job start Tue Mar 31 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00378 * 2 1 4 4 O 1.20828 * 119.99477 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00388 * 180.27185 * 3 2 1 6 6 C 1.53000 * 109.47284 * 179.72259 * 5 3 2 7 7 H 1.09002 * 109.46936 * 304.99895 * 6 5 3 8 8 C 1.52999 * 109.47094 * 64.99945 * 6 5 3 9 9 C 1.50703 * 109.47160 * 185.00234 * 6 5 3 10 10 O 1.21274 * 119.99718 * 334.52211 * 9 6 5 11 11 N 1.34770 * 119.99766 * 154.52758 * 9 6 5 12 12 C 1.46959 * 120.59890 * 4.79357 * 11 9 6 13 13 C 1.53808 * 108.40136 * 124.76054 * 12 11 9 14 14 N 1.46962 * 108.57757 * 49.63967 * 13 12 11 15 15 C 1.36934 * 120.59577 * 124.62949 * 14 13 12 16 16 H 1.08004 * 120.00257 * 212.09706 * 15 14 13 17 17 C 1.38813 * 120.00232 * 32.09523 * 15 14 13 18 18 N 1.31622 * 119.99863 * 10.26960 * 17 15 14 19 19 Si 1.86798 * 120.00407 * 190.26712 * 17 15 14 20 20 H 1.48505 * 109.47029 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47321 * 120.00129 * 19 17 15 22 22 H 1.48496 * 109.47325 * 240.00083 * 19 17 15 23 23 C 1.46964 * 118.81266 * 304.64697 * 14 13 12 24 24 C 1.46971 * 120.59345 * 185.07765 * 11 9 6 25 25 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47375 * 300.00509 * 1 2 3 27 27 H 1.09005 * 109.46760 * 60.00405 * 1 2 3 28 28 H 1.08998 * 109.47240 * 299.72036 * 5 3 2 29 29 H 1.09002 * 109.47330 * 59.72197 * 5 3 2 30 30 H 1.08997 * 109.47189 * 54.58331 * 8 6 5 31 31 H 1.08994 * 109.47013 * 174.58518 * 8 6 5 32 32 H 1.08997 * 109.47125 * 294.58041 * 8 6 5 33 33 H 1.09003 * 109.61553 * 244.54444 * 12 11 9 34 34 H 1.09000 * 109.61066 * 5.05384 * 12 11 9 35 35 H 1.09004 * 109.74371 * 289.85140 * 13 12 11 36 36 H 1.09003 * 109.53614 * 169.30282 * 13 12 11 37 37 H 0.97003 * 120.00360 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.60951 * 295.48400 * 23 14 13 39 39 H 1.08999 * 109.75397 * 175.05897 * 23 14 13 40 40 H 1.09003 * 109.60515 * 354.94397 * 24 11 9 41 41 H 1.08996 * 109.61188 * 115.45550 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0062 6 6 4.0001 2.7420 -0.0118 7 1 3.5345 3.2553 -0.8532 8 6 3.5653 3.4075 1.2954 9 6 5.4994 2.8221 -0.1419 10 8 6.1905 1.8978 0.2305 11 7 6.0720 3.9209 -0.6720 12 6 5.2571 5.0901 -1.0305 13 6 5.8302 6.3213 -0.3085 14 7 7.2801 6.3694 -0.5440 15 6 7.8619 7.4855 -1.0834 16 1 8.7324 7.3889 -1.7154 17 6 7.3328 8.7412 -0.8181 18 7 6.4051 8.8828 0.1047 19 14 7.9375 10.2299 -1.7707 20 1 8.9752 9.8062 -2.7448 21 1 6.7998 10.8480 -2.4977 22 1 8.5179 11.2189 -0.8272 23 6 8.0943 5.1981 -0.1907 24 6 7.5219 3.9691 -0.9076 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9596 0.7832 0.8835 29 1 3.9525 0.7783 -0.8964 30 1 3.9523 2.8371 2.1398 31 1 3.9569 4.4239 1.3335 32 1 2.4768 3.4355 1.3443 33 1 5.2940 5.2451 -2.1088 34 1 4.2259 4.9274 -0.7170 35 1 5.6358 6.2444 0.7613 36 1 5.3653 7.2247 -0.7033 37 1 6.0356 9.7602 0.2905 38 1 8.0610 5.0413 0.8875 39 1 9.1256 5.3579 -0.5053 40 1 7.9868 3.0657 -0.5127 41 1 7.7164 4.0460 -1.9773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268238022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:50 Heat of formation + Delta-G solvation = -96.180832 kcal Electronic energy + Delta-G solvation = -23291.552713 eV Core-core repulsion = 19786.570216 eV Total energy + Delta-G solvation = -3504.982497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81215 -39.71966 -37.04512 -36.65829 -34.31610 -33.80982 -31.32653 -30.17586 -29.12112 -27.11768 -27.00312 -24.38342 -23.29003 -22.57622 -21.15609 -20.04114 -18.43325 -18.02108 -17.18992 -16.69098 -16.48440 -15.90460 -15.48239 -14.89498 -14.82350 -14.37094 -13.86132 -13.68001 -13.50860 -13.34427 -13.20591 -13.09269 -12.69152 -12.25214 -12.23059 -11.93777 -11.67062 -11.32743 -11.20534 -11.06099 -10.96595 -10.88396 -10.72729 -10.53520 -10.49234 -10.21759 -10.07032 -9.84886 -9.29829 -8.60906 -8.25839 -6.67070 -5.86619 -3.37204 2.05471 2.47322 2.93471 3.32132 3.40006 3.41703 3.48350 4.41437 4.43801 4.74147 4.85934 4.86763 4.93942 4.95786 5.23684 5.29145 5.32705 5.39972 5.55844 5.58310 5.78859 5.85863 5.89569 5.92284 6.04019 6.12027 6.18349 6.20778 6.34837 6.38788 6.43814 6.78739 6.92379 7.21926 7.48861 7.58660 7.70668 7.89600 8.37687 8.51037 9.11896 9.72222 10.31012 11.20629 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.003772 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.582066 B = 7422.083408 C = 8038.257839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.502 6.502 5 C -0.095 4.095 6 C -0.098 4.098 7 H 0.102 0.898 8 C -0.150 4.150 9 C 0.517 3.483 10 O -0.560 6.560 11 N -0.593 5.593 12 C 0.074 3.926 13 C 0.160 3.840 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.024 0.976 36 H 0.102 0.898 37 H 0.255 0.745 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 -14.697 -1.037 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.389 6.389 5 C -0.133 4.133 6 C -0.120 4.120 7 H 0.120 0.880 8 C -0.208 4.208 9 C 0.304 3.696 10 O -0.440 6.440 11 N -0.324 5.324 12 C -0.050 4.050 13 C 0.033 3.967 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.399 -14.686 -0.802 17.455 hybrid contribution -0.010 0.997 -0.471 1.103 sum -9.409 -13.689 -1.273 16.659 Atomic orbital electron populations 1.23256 0.76426 1.03575 1.02614 1.86517 1.23386 1.33646 1.84230 1.23823 0.92186 0.81253 0.72126 1.90658 1.67254 1.36059 1.44973 1.21198 0.86763 0.98260 1.07065 1.21072 0.93273 0.95243 1.02382 0.88036 1.21919 1.03124 1.01332 0.94417 1.20320 0.89658 0.82160 0.77438 1.90633 1.64765 1.38322 1.50305 1.48046 1.08847 1.14769 1.60730 1.22908 0.94117 0.87384 1.00620 1.21270 0.84624 0.94466 0.96325 1.43949 1.01759 1.12774 1.72973 1.19235 1.12511 0.83957 1.22793 0.91588 1.25210 0.99307 0.97761 0.97078 1.69951 1.30342 1.22690 1.31829 0.86159 0.78220 0.82752 0.79245 1.20196 1.21493 1.21588 1.21295 0.95055 0.86968 0.96210 1.22222 0.79788 1.00583 1.00350 0.88215 0.91858 0.91874 0.86551 0.87342 0.92324 0.91092 0.90116 0.91823 0.90571 0.95765 0.88052 0.93474 0.95860 0.91569 0.89972 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.80 10.56 -39.26 -0.41 -4.22 16 3 C 0.46 5.50 7.70 36.00 0.28 5.77 16 4 O -0.50 -7.01 13.73 -18.75 -0.26 -7.27 16 5 C -0.09 -1.11 4.74 -27.89 -0.13 -1.24 16 6 C -0.10 -1.35 1.50 -91.77 -0.14 -1.49 16 7 H 0.10 1.36 6.49 -51.93 -0.34 1.02 16 8 C -0.15 -2.06 8.56 37.16 0.32 -1.74 16 9 C 0.52 8.72 6.79 -10.99 -0.07 8.65 16 10 O -0.56 -10.68 15.61 5.56 0.09 -10.59 16 11 N -0.59 -10.62 2.94 -172.22 -0.51 -11.13 16 12 C 0.07 1.33 6.11 -3.37 -0.02 1.30 16 13 C 0.16 3.61 5.47 -3.37 -0.02 3.59 16 14 N -0.59 -14.36 2.96 -171.77 -0.51 -14.87 16 15 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 16 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 17 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 18 N -0.90 -25.28 11.05 55.49 0.61 -24.66 16 19 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.13 2.75 6.67 -3.60 -0.02 2.73 16 24 C 0.09 1.73 6.60 -3.60 -0.02 1.70 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.12 1.31 8.03 -51.93 -0.42 0.90 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.05 7.27 -51.93 -0.38 0.68 16 32 H 0.08 1.08 6.08 -51.93 -0.32 0.76 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.19 4.92 -51.93 -0.26 0.94 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 2.54 6.05 -51.93 -0.31 2.22 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 40 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -31.11 330.26 -6.18 -37.29 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.14 Total: 0.68 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 1.00 Total: 13.78 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.40 Total: -50.66 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.59 Total: -22.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.11 -6.18 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268238022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.886 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds