Wall clock time and date at job start Tue Mar 31 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00378 * 2 1 4 4 O 1.20828 * 119.99477 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00388 * 180.27185 * 3 2 1 6 6 C 1.53000 * 109.47284 * 179.72259 * 5 3 2 7 7 H 1.09002 * 109.46936 * 304.99895 * 6 5 3 8 8 C 1.52999 * 109.47094 * 64.99945 * 6 5 3 9 9 C 1.50703 * 109.47160 * 185.00234 * 6 5 3 10 10 O 1.21274 * 119.99718 * 334.52211 * 9 6 5 11 11 N 1.34770 * 119.99766 * 154.52758 * 9 6 5 12 12 C 1.46959 * 120.59890 * 4.79357 * 11 9 6 13 13 C 1.53808 * 108.40136 * 124.76054 * 12 11 9 14 14 N 1.46962 * 108.57757 * 49.63967 * 13 12 11 15 15 C 1.36934 * 120.59577 * 124.62949 * 14 13 12 16 16 H 1.08004 * 120.00257 * 212.09706 * 15 14 13 17 17 C 1.38813 * 120.00232 * 32.09523 * 15 14 13 18 18 N 1.31622 * 119.99863 * 10.26960 * 17 15 14 19 19 Si 1.86798 * 120.00407 * 190.26712 * 17 15 14 20 20 H 1.48505 * 109.47029 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47321 * 120.00129 * 19 17 15 22 22 H 1.48496 * 109.47325 * 240.00083 * 19 17 15 23 23 C 1.46964 * 118.81266 * 304.64697 * 14 13 12 24 24 C 1.46971 * 120.59345 * 185.07765 * 11 9 6 25 25 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47375 * 300.00509 * 1 2 3 27 27 H 1.09005 * 109.46760 * 60.00405 * 1 2 3 28 28 H 1.08998 * 109.47240 * 299.72036 * 5 3 2 29 29 H 1.09002 * 109.47330 * 59.72197 * 5 3 2 30 30 H 1.08997 * 109.47189 * 54.58331 * 8 6 5 31 31 H 1.08994 * 109.47013 * 174.58518 * 8 6 5 32 32 H 1.08997 * 109.47125 * 294.58041 * 8 6 5 33 33 H 1.09003 * 109.61553 * 244.54444 * 12 11 9 34 34 H 1.09000 * 109.61066 * 5.05384 * 12 11 9 35 35 H 1.09004 * 109.74371 * 289.85140 * 13 12 11 36 36 H 1.09003 * 109.53614 * 169.30282 * 13 12 11 37 37 H 0.97003 * 120.00360 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.60951 * 295.48400 * 23 14 13 39 39 H 1.08999 * 109.75397 * 175.05897 * 23 14 13 40 40 H 1.09003 * 109.60515 * 354.94397 * 24 11 9 41 41 H 1.08996 * 109.61188 * 115.45550 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0062 6 6 4.0001 2.7420 -0.0118 7 1 3.5345 3.2553 -0.8532 8 6 3.5653 3.4075 1.2954 9 6 5.4994 2.8221 -0.1419 10 8 6.1905 1.8978 0.2305 11 7 6.0720 3.9209 -0.6720 12 6 5.2571 5.0901 -1.0305 13 6 5.8302 6.3213 -0.3085 14 7 7.2801 6.3694 -0.5440 15 6 7.8619 7.4855 -1.0834 16 1 8.7324 7.3889 -1.7154 17 6 7.3328 8.7412 -0.8181 18 7 6.4051 8.8828 0.1047 19 14 7.9375 10.2299 -1.7707 20 1 8.9752 9.8062 -2.7448 21 1 6.7998 10.8480 -2.4977 22 1 8.5179 11.2189 -0.8272 23 6 8.0943 5.1981 -0.1907 24 6 7.5219 3.9691 -0.9076 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9596 0.7832 0.8835 29 1 3.9525 0.7783 -0.8964 30 1 3.9523 2.8371 2.1398 31 1 3.9569 4.4239 1.3335 32 1 2.4768 3.4355 1.3443 33 1 5.2940 5.2451 -2.1088 34 1 4.2259 4.9274 -0.7170 35 1 5.6358 6.2444 0.7613 36 1 5.3653 7.2247 -0.7033 37 1 6.0356 9.7602 0.2905 38 1 8.0610 5.0413 0.8875 39 1 9.1256 5.3579 -0.5053 40 1 7.9868 3.0657 -0.5127 41 1 7.7164 4.0460 -1.9773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268238022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:49 Heat of formation + Delta-G solvation = -114.974488 kcal Electronic energy + Delta-G solvation = -23292.367667 eV Core-core repulsion = 19786.570216 eV Total energy + Delta-G solvation = -3505.797451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82132 -41.00636 -38.54346 -37.68542 -35.67215 -35.34324 -33.13349 -31.83176 -30.06654 -28.75335 -27.86743 -25.95600 -24.87229 -24.05685 -22.39064 -21.40817 -19.88874 -19.21301 -18.31923 -18.04214 -17.53476 -17.16487 -16.85601 -16.61763 -16.24212 -15.65186 -15.37838 -15.16788 -14.99776 -14.84923 -14.39095 -14.25240 -13.90329 -13.53051 -13.32839 -13.11761 -13.01460 -12.92944 -12.73929 -12.46139 -12.30459 -12.19632 -12.18055 -12.00646 -11.87862 -11.75501 -11.64582 -11.49095 -10.72844 -10.57383 -9.81712 -8.60385 -7.87706 -5.42310 1.15069 1.47707 1.50273 1.53880 1.60172 1.63994 2.15789 2.50950 3.28296 3.35861 3.59625 3.63090 3.85362 3.97860 4.20405 4.24995 4.33454 4.34261 4.36561 4.39111 4.56791 4.57720 4.61356 4.65924 4.73570 4.77002 4.80209 4.84761 4.96491 5.08477 5.17424 5.26345 5.42249 5.54667 5.62433 5.66605 6.38634 6.46819 6.71515 7.11511 7.12983 7.78156 8.33125 9.16818 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.003772 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.582066 B = 7422.083408 C = 8038.257839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.527 6.527 5 C -0.091 4.091 6 C -0.092 4.092 7 H 0.109 0.891 8 C -0.144 4.144 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.600 5.600 12 C 0.092 3.908 13 C 0.166 3.834 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.069 0.931 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.295 1.295 23 C 0.132 3.868 24 C 0.105 3.895 25 H 0.130 0.870 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.101 0.899 35 H -0.001 1.001 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -16.086 -2.031 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.416 6.416 5 C -0.128 4.128 6 C -0.114 4.114 7 H 0.127 0.873 8 C -0.202 4.202 9 C 0.308 3.692 10 O -0.460 6.460 11 N -0.331 5.331 12 C -0.032 4.032 13 C 0.040 3.960 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.580 5.580 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.222 1.222 23 C 0.005 3.995 24 C -0.019 4.019 25 H 0.148 0.852 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.017 0.983 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.932 -16.121 -1.803 19.021 hybrid contribution 0.154 1.353 -0.100 1.365 sum -9.778 -14.769 -1.903 17.814 Atomic orbital electron populations 1.23554 0.74683 1.05660 1.02625 1.86501 1.25074 1.32708 1.83737 1.23736 0.92109 0.81308 0.71447 1.90654 1.67761 1.36877 1.46309 1.21140 0.86937 0.96722 1.08034 1.21040 0.90769 0.97030 1.02530 0.87341 1.21856 1.03320 1.00387 0.94608 1.20794 0.90856 0.81314 0.76205 1.90625 1.65622 1.38906 1.50842 1.48106 1.08716 1.15094 1.61173 1.22627 0.94934 0.85343 1.00288 1.21068 0.84173 0.95603 0.95183 1.44213 1.02717 1.13227 1.73147 1.19540 1.12471 0.84876 1.22557 0.91366 1.25932 0.99769 1.00275 0.98096 1.70110 1.31594 1.22894 1.33357 0.85157 0.77756 0.79271 0.77921 1.19062 1.21464 1.22163 1.21366 0.95409 0.87090 0.95612 1.22050 0.80150 0.99197 1.00547 0.85169 0.91908 0.91856 0.86026 0.85992 0.92020 0.92694 0.89593 0.91078 0.88102 0.98260 0.90718 0.93916 0.97447 0.90865 0.89202 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.84 10.56 -51.43 -0.54 -7.38 16 3 C 0.47 10.21 7.70 71.23 0.55 10.75 16 4 O -0.53 -13.82 13.73 21.96 0.30 -13.52 16 5 C -0.09 -1.91 4.74 29.85 0.14 -1.77 16 6 C -0.09 -2.37 1.50 -11.54 -0.02 -2.38 16 7 H 0.11 2.66 6.49 -2.39 -0.02 2.64 16 8 C -0.14 -3.78 8.56 71.98 0.62 -3.16 16 9 C 0.52 16.66 6.79 87.66 0.60 17.26 16 10 O -0.58 -21.05 15.61 -3.01 -0.05 -21.10 16 11 N -0.60 -20.69 2.94 -817.18 -2.40 -23.09 16 12 C 0.09 3.22 6.11 86.56 0.53 3.75 16 13 C 0.17 7.62 5.47 86.56 0.47 8.10 16 14 N -0.61 -29.79 2.96 -697.36 -2.06 -31.85 16 15 C -0.26 -14.02 9.58 84.03 0.80 -13.21 16 16 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16 17 C -0.04 -2.42 5.06 84.86 0.43 -1.99 16 18 N -0.93 -53.32 11.05 21.65 0.24 -53.08 16 19 Si 0.97 43.44 29.57 68.60 2.03 45.47 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 C 0.13 5.48 6.67 86.41 0.58 6.06 16 24 C 0.10 3.68 6.60 86.41 0.57 4.25 16 25 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 27 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 28 H 0.12 2.48 8.03 -2.39 -0.02 2.46 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.61 7.27 -2.39 -0.02 1.59 16 32 H 0.09 2.19 6.08 -2.39 -0.01 2.18 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.10 3.02 4.92 -2.39 -0.01 3.01 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.07 3.84 6.05 -2.39 -0.01 3.82 16 37 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.07 2.89 7.94 -2.39 -0.02 2.87 16 40 H 0.09 3.05 6.99 -2.39 -0.02 3.03 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.13 330.26 5.00 -61.13 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.02 Total: 14.22 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 6.46 Total: 29.20 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.23 Total: -108.02 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.29 Total: -42.00 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.13 5.00 -61.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268238022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.843 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds