Wall clock time and date at job start Tue Mar 31 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00313 * 2 1 4 4 O 1.20822 * 119.99417 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46924 * 173.86713 * 5 3 2 7 7 H 1.08999 * 109.47101 * 54.21533 * 6 5 3 8 8 C 1.52998 * 109.47240 * 294.21576 * 6 5 3 9 9 N 1.46898 * 109.47118 * 174.21604 * 6 5 3 10 10 C 1.46899 * 111.00146 * 180.81108 * 9 6 5 11 11 C 1.53232 * 109.33920 * 187.25023 * 10 9 6 12 12 N 1.47079 * 108.52324 * 306.16989 * 11 10 9 13 13 C 1.34775 * 120.88010 * 231.18641 * 12 11 10 14 14 O 1.21685 * 120.00541 * 5.22997 * 13 12 11 15 15 C 1.46376 * 119.99843 * 185.22457 * 13 12 11 16 16 H 1.08001 * 120.00282 * 353.62882 * 15 13 12 17 17 C 1.40053 * 119.99995 * 173.62267 * 15 13 12 18 18 N 1.30676 * 120.00094 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00128 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46946 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47295 * 300.00454 * 19 17 15 22 22 H 1.48501 * 109.46652 * 60.00675 * 19 17 15 23 23 C 1.47075 * 118.23604 * 51.45932 * 12 11 10 24 24 C 1.46906 * 110.99684 * 305.10984 * 9 6 5 25 25 H 1.08993 * 109.47757 * 59.99393 * 1 2 3 26 26 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46470 * 299.99141 * 1 2 3 28 28 H 1.09006 * 109.46872 * 53.87529 * 5 3 2 29 29 H 1.08992 * 109.47577 * 293.86929 * 5 3 2 30 30 H 1.08995 * 109.47449 * 179.97438 * 8 6 5 31 31 H 1.09008 * 109.47108 * 299.99707 * 8 6 5 32 32 H 1.08997 * 109.47418 * 59.99665 * 8 6 5 33 33 H 1.09003 * 109.48916 * 67.28782 * 10 9 6 34 34 H 1.08993 * 109.51124 * 307.22766 * 10 9 6 35 35 H 1.09004 * 109.62692 * 186.45882 * 11 10 9 36 36 H 1.08997 * 109.63024 * 65.88346 * 11 10 9 37 37 H 0.96992 * 120.00195 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.63007 * 68.25629 * 23 12 11 39 39 H 1.09003 * 109.62567 * 188.83280 * 23 12 11 40 40 H 1.08999 * 109.49382 * 292.70839 * 24 9 6 41 41 H 1.09005 * 109.49489 * 52.76298 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0006 2.7338 -0.1546 7 1 3.5231 3.3383 0.6166 8 6 3.5848 3.2467 -1.5348 9 7 5.4600 2.8275 -0.0166 10 6 5.9122 4.2197 -0.1400 11 6 7.4438 4.2549 -0.1723 12 7 7.9526 3.5379 1.0069 13 6 8.8644 4.1053 1.8212 14 8 9.2069 5.2589 1.6411 15 6 9.4426 3.3337 2.9225 16 1 9.0657 2.3467 3.1468 17 6 10.4848 3.8752 3.6855 18 7 10.9406 5.0695 3.4145 19 14 11.2222 2.8909 5.0914 20 1 12.3011 3.6814 5.7366 21 1 10.1664 2.5874 6.0905 22 1 11.7852 1.6215 4.5650 23 6 7.4445 2.1831 1.2702 24 6 5.9085 2.2318 1.2491 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8902 28 1 3.9605 0.6889 -0.8310 29 1 3.9514 0.8783 0.9389 30 1 3.8937 4.2862 -1.6443 31 1 4.0623 2.6422 -2.3060 32 1 2.5019 3.1772 -1.6372 33 1 5.5530 4.7957 0.7129 34 1 5.5189 4.6500 -1.0609 35 1 7.7869 5.2892 -0.1481 36 1 7.8022 3.7684 -1.0794 37 1 11.6621 5.4447 3.9431 38 1 7.8030 1.5013 0.4991 39 1 7.7881 1.8470 2.2486 40 1 5.5494 2.8354 2.0826 41 1 5.5122 1.2200 1.3355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274742981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:53 Heat of formation + Delta-G solvation = -104.882450 kcal Electronic energy + Delta-G solvation = -23033.509826 eV Core-core repulsion = 19528.149999 eV Total energy + Delta-G solvation = -3505.359827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80195 -39.07512 -37.22617 -36.48924 -34.27963 -32.53123 -31.55209 -30.72133 -29.04768 -27.26154 -26.60124 -25.43631 -22.98684 -21.95909 -20.99564 -19.92812 -18.85931 -17.97400 -16.92526 -16.81276 -16.51441 -15.74692 -15.08228 -14.85934 -14.63796 -14.31715 -14.18548 -13.87641 -13.70245 -13.32069 -13.08725 -12.81510 -12.56072 -12.29785 -11.95281 -11.74927 -11.51911 -11.47256 -11.16966 -11.12358 -11.02907 -10.87721 -10.81305 -10.62242 -10.54372 -10.32579 -10.22963 -9.93166 -8.85924 -8.20451 -7.58813 -7.18154 -6.20370 -4.65268 1.99935 2.44908 3.14741 3.19842 3.21343 3.97526 4.09911 4.50289 4.53798 4.60049 4.73685 4.79632 4.81628 4.89440 5.21046 5.27269 5.32822 5.48385 5.50735 5.53226 5.67733 5.74449 5.81154 5.84389 5.86577 6.03563 6.05672 6.09895 6.26713 6.31313 6.47039 6.55189 6.71729 7.20165 7.26652 7.44467 7.53937 7.61600 8.12672 8.36096 9.01329 9.44265 10.57220 10.75724 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.003589 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.727593 B = 7799.943320 C = 8565.273631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.505 6.505 5 C -0.113 4.113 6 C 0.091 3.909 7 H 0.050 0.950 8 C -0.149 4.149 9 N -0.530 5.530 10 C 0.044 3.956 11 C 0.126 3.874 12 N -0.645 5.645 13 C 0.560 3.440 14 O -0.579 6.579 15 C -0.545 4.545 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.268 1.268 22 H -0.267 1.267 23 C 0.130 3.870 24 C 0.032 3.968 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.269 0.731 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.630 -10.897 -6.607 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.393 6.393 5 C -0.151 4.151 6 C -0.017 4.017 7 H 0.068 0.932 8 C -0.207 4.207 9 N -0.256 5.256 10 C -0.084 4.084 11 C 0.001 3.999 12 N -0.383 5.383 13 C 0.366 3.634 14 O -0.462 6.462 15 C -0.582 4.582 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.731 3.269 20 H -0.206 1.206 21 H -0.193 1.193 22 H -0.192 1.192 23 C 0.005 3.995 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.302 -10.044 -7.032 20.398 hybrid contribution -0.354 -0.110 1.366 1.415 sum -16.655 -10.155 -5.666 20.313 Atomic orbital electron populations 1.23251 0.76448 1.03615 1.02534 1.86520 1.23378 1.33666 1.84211 1.23824 0.92267 0.81214 0.72029 1.90662 1.67321 1.36228 1.45086 1.21580 0.86767 1.00124 1.06630 1.21340 0.88672 0.92996 0.98695 0.93229 1.21962 1.01464 1.01646 0.95613 1.62005 1.09396 1.19186 1.35027 1.22579 0.97541 0.87619 1.00703 1.21208 0.90378 0.98963 0.89309 1.48247 1.46508 1.15783 1.27808 1.18244 0.77162 0.86409 0.81588 1.90587 1.63004 1.18278 1.74287 1.20933 1.19264 1.02962 1.15032 0.90990 1.25730 0.95778 0.94452 0.97248 1.69999 1.20845 1.14044 1.34870 0.86450 0.78970 0.80209 0.81242 1.20575 1.19280 1.19203 1.21561 0.90078 0.85895 1.01981 1.22813 0.98095 0.98977 0.89785 0.91929 0.88150 0.91929 0.86764 0.86973 0.92034 0.91934 0.91603 0.94715 0.90329 0.89574 0.93220 0.92024 0.93067 0.88772 0.94476 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 10.57 -39.26 -0.41 -3.99 16 3 C 0.46 5.19 7.57 36.00 0.27 5.46 16 4 O -0.51 -6.90 14.01 -18.75 -0.26 -7.17 16 5 C -0.11 -1.15 5.09 -27.88 -0.14 -1.30 16 6 C 0.09 1.14 1.79 -67.71 -0.12 1.02 16 7 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16 8 C -0.15 -1.72 8.76 37.16 0.33 -1.40 16 9 N -0.53 -7.67 4.50 -226.05 -1.02 -8.68 16 10 C 0.04 0.72 5.41 -3.70 -0.02 0.70 16 11 C 0.13 2.49 6.61 -3.61 -0.02 2.47 16 12 N -0.64 -14.68 3.00 -173.85 -0.52 -15.20 16 13 C 0.56 15.93 7.62 -12.99 -0.10 15.83 16 14 O -0.58 -18.77 14.50 5.20 0.08 -18.70 16 15 C -0.55 -15.14 8.86 -35.63 -0.32 -15.46 16 16 H 0.07 1.80 5.73 -52.49 -0.30 1.50 16 17 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 18 N -0.77 -23.00 11.85 55.55 0.66 -22.34 16 19 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 C 0.13 2.37 6.50 -3.37 -0.02 2.35 16 24 C 0.03 0.48 5.33 -3.46 -0.02 0.46 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.13 -51.92 -0.42 0.03 16 28 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.11 1.04 5.85 -51.93 -0.30 0.74 16 30 H 0.06 0.71 6.27 -51.93 -0.33 0.39 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.78 6.25 -51.93 -0.32 0.45 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.10 5.97 -51.93 -0.31 0.79 16 35 H 0.09 1.90 7.04 -51.93 -0.37 1.53 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.78 5.46 -51.93 -0.28 1.49 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.91 5.70 -51.93 -0.30 0.62 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -35.06 326.56 -6.63 -41.70 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.86 Total: 0.83 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 0.81 Total: 13.78 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.88 Total: -46.23 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.60 Total: -29.85 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.06 -6.63 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274742981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.184 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds