Wall clock time and date at job start Tue Mar 31 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00313 * 2 1 4 4 O 1.20822 * 119.99417 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46924 * 173.86713 * 5 3 2 7 7 H 1.08999 * 109.47101 * 54.21533 * 6 5 3 8 8 C 1.52998 * 109.47240 * 294.21576 * 6 5 3 9 9 N 1.46898 * 109.47118 * 174.21604 * 6 5 3 10 10 C 1.46899 * 111.00146 * 180.81108 * 9 6 5 11 11 C 1.53232 * 109.33920 * 187.25023 * 10 9 6 12 12 N 1.47079 * 108.52324 * 306.16989 * 11 10 9 13 13 C 1.34775 * 120.88010 * 231.18641 * 12 11 10 14 14 O 1.21685 * 120.00541 * 5.22997 * 13 12 11 15 15 C 1.46376 * 119.99843 * 185.22457 * 13 12 11 16 16 H 1.08001 * 120.00282 * 353.62882 * 15 13 12 17 17 C 1.40053 * 119.99995 * 173.62267 * 15 13 12 18 18 N 1.30676 * 120.00094 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00128 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46946 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47295 * 300.00454 * 19 17 15 22 22 H 1.48501 * 109.46652 * 60.00675 * 19 17 15 23 23 C 1.47075 * 118.23604 * 51.45932 * 12 11 10 24 24 C 1.46906 * 110.99684 * 305.10984 * 9 6 5 25 25 H 1.08993 * 109.47757 * 59.99393 * 1 2 3 26 26 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46470 * 299.99141 * 1 2 3 28 28 H 1.09006 * 109.46872 * 53.87529 * 5 3 2 29 29 H 1.08992 * 109.47577 * 293.86929 * 5 3 2 30 30 H 1.08995 * 109.47449 * 179.97438 * 8 6 5 31 31 H 1.09008 * 109.47108 * 299.99707 * 8 6 5 32 32 H 1.08997 * 109.47418 * 59.99665 * 8 6 5 33 33 H 1.09003 * 109.48916 * 67.28782 * 10 9 6 34 34 H 1.08993 * 109.51124 * 307.22766 * 10 9 6 35 35 H 1.09004 * 109.62692 * 186.45882 * 11 10 9 36 36 H 1.08997 * 109.63024 * 65.88346 * 11 10 9 37 37 H 0.96992 * 120.00195 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.63007 * 68.25629 * 23 12 11 39 39 H 1.09003 * 109.62567 * 188.83280 * 23 12 11 40 40 H 1.08999 * 109.49382 * 292.70839 * 24 9 6 41 41 H 1.09005 * 109.49489 * 52.76298 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0006 2.7338 -0.1546 7 1 3.5231 3.3383 0.6166 8 6 3.5848 3.2467 -1.5348 9 7 5.4600 2.8275 -0.0166 10 6 5.9122 4.2197 -0.1400 11 6 7.4438 4.2549 -0.1723 12 7 7.9526 3.5379 1.0069 13 6 8.8644 4.1053 1.8212 14 8 9.2069 5.2589 1.6411 15 6 9.4426 3.3337 2.9225 16 1 9.0657 2.3467 3.1468 17 6 10.4848 3.8752 3.6855 18 7 10.9406 5.0695 3.4145 19 14 11.2222 2.8909 5.0914 20 1 12.3011 3.6814 5.7366 21 1 10.1664 2.5874 6.0905 22 1 11.7852 1.6215 4.5650 23 6 7.4445 2.1831 1.2702 24 6 5.9085 2.2318 1.2491 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8902 28 1 3.9605 0.6889 -0.8310 29 1 3.9514 0.8783 0.9389 30 1 3.8937 4.2862 -1.6443 31 1 4.0623 2.6422 -2.3060 32 1 2.5019 3.1772 -1.6372 33 1 5.5530 4.7957 0.7129 34 1 5.5189 4.6500 -1.0609 35 1 7.7869 5.2892 -0.1481 36 1 7.8022 3.7684 -1.0794 37 1 11.6621 5.4447 3.9431 38 1 7.8030 1.5013 0.4991 39 1 7.7881 1.8470 2.2486 40 1 5.5494 2.8354 2.0826 41 1 5.5122 1.2200 1.3355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274742981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:53 Heat of formation + Delta-G solvation = -130.565492 kcal Electronic energy + Delta-G solvation = -23034.623526 eV Core-core repulsion = 19528.149999 eV Total energy + Delta-G solvation = -3506.473527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66942 -40.49951 -38.79783 -37.55131 -35.87107 -34.63770 -32.88298 -32.13716 -30.01071 -28.56658 -27.89758 -27.01668 -24.39551 -23.12746 -22.43056 -21.03094 -20.49502 -18.95105 -18.38284 -17.79327 -17.63851 -17.55140 -16.46087 -16.13080 -15.94314 -15.90563 -15.61197 -15.33113 -14.89024 -14.39595 -14.31369 -14.14257 -13.83289 -13.36760 -13.24940 -13.02251 -12.94651 -12.89141 -12.71557 -12.67362 -12.33227 -12.19264 -12.06858 -11.96957 -11.82787 -11.72846 -11.50196 -11.39850 -10.90529 -9.78061 -9.50706 -8.99936 -8.27997 -6.82639 1.16388 1.41207 1.44848 1.56265 1.69408 2.24963 2.47162 2.74249 2.99289 3.59933 3.60974 3.85423 3.93422 4.03252 4.11558 4.31745 4.34170 4.35121 4.37099 4.42805 4.51106 4.61442 4.65765 4.72791 4.73549 4.81361 4.82882 4.97027 4.97696 5.09133 5.22457 5.27739 5.39608 5.44541 5.75244 5.97838 6.04356 6.15796 6.42696 6.72604 6.89009 7.44712 8.47857 8.68570 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.003589 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.727593 B = 7799.943320 C = 8565.273631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.536 6.536 5 C -0.108 4.108 6 C 0.093 3.907 7 H 0.030 0.970 8 C -0.145 4.145 9 N -0.522 5.522 10 C 0.057 3.943 11 C 0.124 3.876 12 N -0.649 5.649 13 C 0.540 3.460 14 O -0.636 6.636 15 C -0.569 4.569 16 H 0.097 0.903 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 0.997 3.003 20 H -0.278 1.278 21 H -0.254 1.254 22 H -0.250 1.250 23 C 0.124 3.876 24 C 0.039 3.961 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.011 0.989 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.273 0.727 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.018 0.982 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -14.254 -6.512 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.312 3.688 4 O -0.426 6.426 5 C -0.145 4.145 6 C -0.015 4.015 7 H 0.048 0.952 8 C -0.202 4.202 9 N -0.248 5.248 10 C -0.072 4.072 11 C 0.000 4.000 12 N -0.386 5.386 13 C 0.346 3.654 14 O -0.523 6.523 15 C -0.605 4.605 16 H 0.115 0.885 17 C -0.188 4.188 18 N -0.456 5.456 19 Si 0.816 3.184 20 H -0.203 1.203 21 H -0.178 1.178 22 H -0.174 1.174 23 C 0.001 3.999 24 C -0.089 4.089 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.480 -13.470 -6.972 23.143 hybrid contribution -0.112 0.908 1.247 1.546 sum -17.593 -12.563 -5.725 22.363 Atomic orbital electron populations 1.23528 0.74932 1.05636 1.02402 1.86506 1.24872 1.32763 1.83723 1.23944 0.92574 0.81136 0.71172 1.90661 1.68044 1.37274 1.46664 1.21543 0.86326 0.98432 1.08217 1.21340 0.86750 0.94705 0.98691 0.95219 1.21915 1.01390 1.01595 0.95293 1.62006 1.10873 1.17430 1.34442 1.22387 0.94778 0.88961 1.01093 1.21291 0.92848 0.97016 0.88794 1.48155 1.45371 1.17516 1.27558 1.18701 0.77987 0.86030 0.82663 1.90533 1.65262 1.20585 1.75945 1.21489 1.19718 1.04039 1.15267 0.88538 1.27033 0.95887 0.95461 1.00378 1.70192 1.21856 1.16665 1.36840 0.85085 0.78070 0.78481 0.76773 1.20278 1.17773 1.17386 1.21792 0.92310 0.83570 1.02200 1.22773 0.95659 1.01118 0.89391 0.91927 0.85098 0.92280 0.84552 0.85633 0.92480 0.90615 0.91834 0.97034 0.87723 0.92892 0.91604 0.91684 0.91174 0.89485 0.96372 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.18 10.57 -51.41 -0.54 -6.73 16 3 C 0.47 9.36 7.57 71.23 0.54 9.90 16 4 O -0.54 -13.94 14.01 21.98 0.31 -13.63 16 5 C -0.11 -1.83 5.09 29.85 0.15 -1.68 16 6 C 0.09 2.12 1.79 44.92 0.08 2.21 16 7 H 0.03 0.82 7.84 -2.39 -0.02 0.80 16 8 C -0.14 -3.02 8.76 71.98 0.63 -2.39 16 9 N -0.52 -13.98 4.50 -869.08 -3.91 -17.89 16 10 C 0.06 1.82 5.41 86.38 0.47 2.28 16 11 C 0.12 5.02 6.61 86.35 0.57 5.59 16 12 N -0.65 -30.01 3.00 -822.17 -2.47 -32.48 16 13 C 0.54 31.85 7.62 86.36 0.66 32.51 16 14 O -0.64 -43.58 14.50 -4.30 -0.06 -43.64 16 15 C -0.57 -32.00 8.86 24.83 0.22 -31.78 16 16 H 0.10 4.75 5.73 -2.91 -0.02 4.74 16 17 C 0.03 1.51 5.50 85.31 0.47 1.98 16 18 N -0.83 -51.14 11.85 21.84 0.26 -50.88 16 19 Si 1.00 40.57 29.56 68.60 2.03 42.60 16 20 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 23 C 0.12 4.37 6.50 86.50 0.56 4.93 16 24 C 0.04 1.08 5.33 86.54 0.46 1.54 16 25 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 26 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.75 8.13 -2.38 -0.02 0.74 16 28 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.13 1.81 5.85 -2.39 -0.01 1.79 16 30 H 0.06 1.23 6.27 -2.39 -0.01 1.21 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.39 6.25 -2.39 -0.01 1.38 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 2.82 5.97 -2.39 -0.01 2.81 16 35 H 0.05 2.47 7.04 -2.39 -0.02 2.46 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 3.16 5.46 -2.39 -0.01 3.15 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.12 2.34 5.70 -2.38 -0.01 2.33 16 Total: -1.00 -80.56 326.56 2.66 -77.90 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.04 Total: 18.14 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 6.01 Total: 26.62 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -6.12 Total: -101.25 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -0.30 Total: -64.01 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -80.56 2.66 -77.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274742981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.664 kcal (2) G-P(sol) polarization free energy of solvation -80.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds